RNA id: XM_039815416.1


Basic Information

Item Value
RNA id XM_039815416.1
length 1843
RNA type mRNA
GC content 0.45
exon number 8
gene id zgc:110366
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24987589 ~ 24992610 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGACGACCCACTAAAATCAGCAACGTTAGGTTTATTTTCTTTGAGTCTCAGGATAGTTTTACGTATGGGGCAGAATCCCTTCCTACACCGCGCTGAACATACTGACTTTGTTCAGTAagcaatgcaaaataaatgtgaGCCATGACGTTACCCCACAACTGCCATAAGTTGTTCAGCACTGCCCAGGGAACATGACCTTCGCACCAGAGCTGAGTTGTCCTGCAATCCCACTTTCCAATGGTCTGCAGATTCCGTTATTTGGATTAGGCACATCACATCATGGCGGATACTCCCATGAAGCCATTGTGTATGCACTCACCGAGTGTGGCGTGCGCCACATTGACACCGCAAAGCGCTACGGCTGCGAGAAGAAACTGGGTGACGCTATCACAGAAAGTGGGATACCACGAAGTGATCTGTGGGTCACCAATAAACTGTGGCATGGGGACTATGGCTACAAAGCCGCAAAGAAGGCGTGCCTTGACTCCTGCTCGCAGATGGGGGTGGAATATTTCGATCTGTACCTGATGCACTGGCCAGAGTCATCGCGACCTGGTTGCTCCAACAGGGAGATGAGAGCTGAGACTTGGAGAGCTTTGGAGGAACTGTATAAAGAAGGGCTGTGCTGTGCTATTGGAGTGAGCAACTTCTTGGTCCATCACCTGGAAGAGTTAAAGGAAGACTGTACTGTTGTGCCACATGTCAACcagGTGGAGTACCATCCTTTCCAGCAGCCCAATCACCTGATGGAGTACTGTCGTCAGGAGGGAATTGTGTTTGAAGGGTACAGTCCGCTGGCCAAGGGTCAAGTCCTCAGCAACCCGACTGTTCTCCAGATAGCAGAAAAACACAGCCGCACACCTGCTCAGATCTGCATCCGCTGGAGTATTCAGAATGGAGTTGTTACAATCCCCAAATCTACGAAAAAGAAGAGGATTCAAGAAAACTGTCaaGTGTTTGGGTTTCAGCTGGAGGAGTCGGACATGGCCGCTTTGGGAGGATTACATGATGGAAGACATGTGTCTTGGGATCCAACAAATGTGGAGTAACATTATGCGAGAAACCCCAGAGGTTGCTTGTCTTTGAACTAGTTTTgtcactagtctatatcgacgacgtttcctTTACAGGATAGTTCCGATGCGGCCGGaggttccgccggatgtccctcaccttccgctttctttgtgttggcattctaaactctggttgatCAAACGTTGAGAAtgtatttggattttgaatCCTGCTTCGTTCATTAGTGTCTCACATCTTGCTTGGAAAGAGACGGCCTAATGTGAAGTTCATTCATCTCAGCTAGCACTACTGGAAAGTGCCGTACTTTGACTGCAAATTAGCCTACGCCTAGAAGTCCCACGCACTGCATTGGTTACACTTTAGATGTAACAATGCCTATATGTATTGTCCCTGATAAATAAActgattaaataaaaataaatatacatattaaCTTTTTTTGTACAATGGAAGAATGACTGATGATCATAGGtaacaaagaaaaaagattgtTAGCAAATCCTTTCTAAATACTGAATGTTTGCCTGTCACACTGAGGATGTGAggtcattcatctttttttcattttcaggatttcCTAGATGGGCAGGGCACTTTAAACATACCCATTCATTGACTTTAAAAGCTTCATTTGCAGGTAACTGTATGTGTTGGGAgaatatgcatgcatgtattttatgtttgctaatattatgtcttttttttagatAGGGCTGGTGGGTAAAGTAGGATGGTATGGGTATGGGACCGACTGATAAATGTTGCAAATATTgatgttaaataaaaacaactccGCACCATGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K23257 yvgN; methylglyoxal/glyoxal reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158661 lncRNA downstream 95130 24876086 ~ 24892459 (-) False G117718
TU158662 lncRNA downstream 95130 24876086 ~ 24892459 (-) True G117718
TU158664 lncRNA downstream 95130 24876086 ~ 24892459 (-) False G117718
TU158657 lncRNA downstream 119158 24863009 ~ 24868431 (-) True G117716
TU158522 lncRNA downstream 190333 24787583 ~ 24797256 (-) True G117616
XR_005640664.1 lncRNA upstream 30791 25023401 ~ 25048014 (-) True LOC120568137
TU158767 lncRNA upstream 288798 25281408 ~ 25335213 (-) True G117786
TU158772 lncRNA upstream 357616 25350226 ~ 25353750 (-) True G117788
TU158773 lncRNA upstream 357616 25350226 ~ 25373646 (-) False G117788
TU158798 lncRNA upstream 600433 25593043 ~ 25593585 (-) True G117812
XM_039815408.1 mRNA downstream 22625 24950498 ~ 24964964 (-) False si:ch211-13f8.1
XM_039815407.1 mRNA downstream 22625 24950498 ~ 24964964 (-) True si:ch211-13f8.1
XM_039815413.1 mRNA downstream 38266 24943660 ~ 24949323 (-) True tal1
XM_039815414.1 mRNA downstream 38275 24943660 ~ 24949314 (-) False tal1
XM_039815725.1 mRNA downstream 53776 24924580 ~ 24933813 (-) True ppm1la
XM_039815422.1 mRNA upstream 4771 24997381 ~ 25001782 (-) True LOC120568136
XM_039815405.1 mRNA upstream 62615 25055225 ~ 25085349 (-) True LOC120568128
XM_039815590.1 mRNA upstream 121768 25114378 ~ 25135959 (-) False LOC120568225
XM_039815591.1 mRNA upstream 121768 25114378 ~ 25133461 (-) False LOC120568225
XM_039815589.1 mRNA upstream 121768 25114378 ~ 25133461 (-) True LOC120568225
TU158687 other downstream 64271 24922203 ~ 24923318 (-) True G117732
TU158445 other downstream 451093 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 966088 24021439 ~ 24021501 (-) True LOC120569138
XR_005640840.1 other downstream 967151 24020362 ~ 24020438 (-) True LOC120569137
unassigned_transcript_562 other downstream 1118363 23869155 ~ 23869226 (-) True trnap-agg_8
TU159298 other upstream 1669011 26661621 ~ 26665952 (-) True G118175
XR_005640672.1 other upstream 1827228 26819838 ~ 26824570 (-) False cirbpa
TU159721 other upstream 2678366 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 2720857 27713467 ~ 27714390 (-) False G118524
TU159738 other upstream 2724941 27717551 ~ 27718759 (-) True G118524

Expression Profile