RNA id: XM_039815454.1


Basic Information

Item Value
RNA id XM_039815454.1
length 3173
RNA type mRNA
GC content 0.53
exon number 22
gene id LOC120568146
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 14330591 ~ 14340646 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATGTCAGTGCGTCAGAGACGCAGTTGTCTGCGCCAGGAGCGCCTGTTGTAGCGCATGTTATAGCTGTAGCAACTGTTACTGTATTCATGTTTACTGTAGGTATAGGCTTGGCGGCAATGGTAGTTTCTAGACATTAACGGTGATAGGTGAATATGTGTCACTGTTGGCTGGTGGTAATGTGAGAACAACTTTTCAGCCCCCACAGAGGCTTTAATTTCTGAGGGATTTTCAACGACAACGGGGAGACACCTTTACGTTGTGCCAGATGGAGCCTCCAGCCAATCCGGGAGTCAGCCCGGCGGAGTTGGAGTTAACGATGGAGAATGTGGAGTCGgCTCTCTACCAGCTGTACTTTGACCCAGACATGGAGCATAAGAATGTGGCCCAGAAATGGCTGACCCAAGCCCAGGCCTCTGCACAGGCATGGCAGTTCTGCTGGGCCCTGCTTGGCCCTGACAAGCTCCCTGAAGTTCAGTTTTTTGGCGCCAGCACCCTCCACACCAAGATCTCCCGTCACTGGAGCGACCTCCCCACAGACCGGCATGAGAGCCTAAAGATGCAGCTCCTCTCCCACATCCTACACTTCTCCTCTGGGCCCAAACTGGTGCTGACCAGGCTGTGTGTAGCCCTGGCTTCTATGGCTCTTAACTTGATTCCACAGGCTTGGTCCCAGCCGGTGGCAGACATGGTGAGGGCCTTCCAACCGCAGAAGCCTGACTCTGAAGGCGGCTCTGGTGCAGAGGCCACCCAGGACCCTCATGCACACTGCCTCGCACTGCTGGAGCTTCTCACTGTACTTCCAGAGGAGTTCCAGAGCAGCCGACTGGCTCACGCTCGTCGTTGCCTGCTGAGGGAGGCCCTGGCTGGGGAGTGGGCGGTGGTGTGTCCCATGCTGCGTCAGCTGCTCCAAAGCCAGGACTCCTCGATCCAGGTGAAAGAGAAGGTGCTCCGCTGCCTGTCCAGCTGGGTGGGGCTGGATGTGCCGTTAGGGGAGAGTCATGAACTGGTCCAGGACTGTTTCACTGCACTGTCCAACACAGAGCTGTTCGACACGGCTGTGGAGACGATAGTCAATGCAATCTCACAACCGGACAGCCAGAGGTACATTGAGGCTCTGGTAAACTTGATGCCTCAGGTGCTGGGTCTCCATGACCAGCTGAAGACAGCAGCTCAGGATGGGGACATGGAAACCTCACACGGTATCTGTCGCATTGCTGTTGCTATGGGGGAAACACActccagGGTTTTGTTGGAACAGGTGGAGCACTGGCAAGAATATCTGGCTTTGGTTAACATGATTCTTTTTTGTACCGGCATCCCTGGGCACTACCCAGTCAGTGAGACCACCAGCTCCCTGACACTCACCTTCTGGTACACTTTGCAGGatgacatcttgtcatttgagGAGGAGAAGCAGGCAGTTTACCTGCAGGTCTACAGGCCGGTTTACTTCCAACTGGTGGACGTGCTACTACATAAATCCCACTATCCCTCCCAGGAGGAGTATGCATCCTGGTCTTCTGATGACAAGGAGCAGTTCAGAATTTACAGAGTGGACATTTCCGACACtctgatgtatgtgtatgaaaTGCTGGGGGCAGAGCTGCTCAGCAACCTCTATGAAAGGCTGGGCAGACAGCTGATGGACCCCCAACAGTCAGCAGTATGGCAGGACACAGAGGCCCTGTTATTTGGCTTCCAGTCCATAGCTGAGACTATAGATGTGAACTACTCTGACGTTATCCCTGGTCTTATTGGCCTCATCCCCAGAATCAACATCAGCAACGTTATGCTGGCTGACACCGTCATGTACACAATAGGATCCCTGGCTGAGTGGCTGGCTGATCACCCCGTGATGTTGGCTGGCATATTACCAATGGTGCTTCAGGGCCTTGTGAAGGCAGAACTGTCTGTGTCCAGTGTATCCACTCTAAAGAGGATCTGCAGGGAGTGTAGACATGACCTCGGCCCCTACACTCAGGACATCCTGACCGTGTCACAGGATGTACTGGTAAAAGAAATCCATAAGagcAGCCAGTGCATGTGGTTGATGCAGGCTCTGGGTTTCCTCCTGTCCGCCCTGCCGGTAGAGGAGGTTCTGGGCAGACTTCACTCTCTTATCACCCCTCACGTCCAGCAGCTGGATACACTGGCCCAGCAGGAGCCTGATCCTACTAACAAACAGTCTATTATCCACATCCTGGGGATGCTGTCCAGTCTCTTTACCACTCTGGACATCAACAGACAAGCAGACAGCTCAGAGGGAGCATCCAGCCCAAGAGTCACTCCCTCACAGATCACGCAGAATCCAGTTGTTGTTGTGCTACAGCAAGTGTTCACGTTGATCCAAACCGTCCTCAGCAAGTGGCTTGATGACTCAGAGGTAGTAGAGGCAGTGTGTGGGGTATTTGAGAAATCAGTTCGAACCCTCCTACATGATTTCGGGCCCATGGTGGCTCAGCTGAGTGAGATGCTGGGGCAGATCTATAGTGCCTTCCCACAAGCCTCAGCTCTGGACCTGGCACGGCAGatggttCACATATTTGCCGGAGAGGAACACCACATCTCTAACATCAAAAACCTTATTGAGGTGTTGACTTCTGCCACACTCACTATATTTCAGCAAGgTCCACGGGATCATCCTGATATTGCAGAGTCATTTATGCACCTTCATGCTCAGATTCTTAAAAGGAAGCCTGATATGTTCCTGTCTGACCGGCTGGATGTTAAAGGGCTGTTTTACAGCGGGATCCTATCACTGAAGTTCCCAGAGACACCCACAGTTAAAGCAGCCACTCTATTCTTTACAGAGCTGTTGCCTCGTTGCAAAGACATGCCCTCGCTTGGTGAAGTGTTGCACAGAGATGGAAAGCTTCTGACAGAGACCATACTCCAGGCGGTTGGGGGCGAGTCACCTCGCAGTCTGACGGATCACTTCTCGGAGGTGTTGTTGAGTCTAAACAGACACTGTCCAGCTCTGCTGTCCCAGTGGCTGAAAGAAACGCTTCAGACCCCAGGGTTCCCCTCTGCCCAGGTCTCCACAGAGCAGAAACACACCTTCAGTCAGCAGCTTCTGAGGGAGCAAACCAACAAACGTTGTGTTAAAGAAATCGTGAAGGAGTTTTCTCTGCTCTGTCGGGGCCTGCAGGGGTCTGGATACTCAGATTACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154334 lncRNA upstream 16173 14314303 ~ 14314633 (+) True G114429
TU154333 lncRNA upstream 16791 14313602 ~ 14314015 (+) True G114428
TU154307 lncRNA upstream 96594 14191963 ~ 14234212 (+) False G114406
TU154308 lncRNA upstream 115848 14191963 ~ 14214958 (+) True G114406
TU154297 lncRNA upstream 156221 14173992 ~ 14174585 (+) True G114398
TU154518 lncRNA downstream 218077 14558365 ~ 14560677 (+) True G114550
TU154529 lncRNA downstream 285879 14626167 ~ 14626770 (+) True G114561
TU154563 lncRNA downstream 353278 14693566 ~ 14693902 (+) True G114585
TU154653 lncRNA downstream 471374 14811662 ~ 14812209 (+) True G114650
TU154747 lncRNA downstream 650700 14990988 ~ 14993083 (+) False rgs18
XM_039815463.1 mRNA upstream 9419 14318675 ~ 14321387 (+) False mgst3a
XM_039815462.1 mRNA upstream 9419 14319499 ~ 14321387 (+) True mgst3a
XM_039815627.1 mRNA upstream 35006 14287156 ~ 14295800 (+) False LOC120568245
XM_039815774.1 mRNA downstream 100581 14440869 ~ 14454235 (+) True LOC120568347
XM_039814713.1 mRNA downstream 209079 14549367 ~ 14551031 (+) True tmem125b
XM_039816352.1 mRNA downstream 236066 14576354 ~ 14618876 (+) True slc1a7a
XM_039815678.1 mRNA downstream 327093 14667381 ~ 14674289 (+) False aldh9a1b
XM_039815676.1 mRNA downstream 327151 14667439 ~ 14674289 (+) True aldh9a1b
TU154338 other upstream 34813 14289537 ~ 14295993 (+) False LOC120568245
TU154336 other upstream 35538 14287150 ~ 14295268 (+) False LOC120568245
TU154339 other upstream 35538 14292760 ~ 14295268 (+) False LOC120568245
TU154337 other upstream 39846 14288355 ~ 14290960 (+) False LOC120568245
unassigned_transcript_558 other upstream 1112596 13218139 ~ 13218210 (+) True trnae-cuc_17
TU154847 other downstream 811508 15151796 ~ 15157199 (+) True G114789
TU155017 other downstream 1132455 15472743 ~ 15478344 (+) False asip2b
TU155036 other downstream 1180511 15520799 ~ 15528769 (+) False zgc:153115
XR_005640849.1 other downstream 1381851 15722139 ~ 15722248 (+) True LOC120569147
XR_005640848.1 other downstream 1382219 15722507 ~ 15722573 (+) True LOC120569146

Expression Profile