RNA id: XM_039815472.1


Basic Information

Item Value
RNA id XM_039815472.1
length 2013
RNA type mRNA
GC content 0.39
exon number 8
gene id tmem59
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 17575306 ~ 17579575 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCGattaaagaggaagaagagcgTGTTGTTTGTTTAGGTTTTCGCAGACAAAATGGGGACTCTTTCCTCCTTTGTCTGTATGTTGGGACTGTTTGTCCTGCTTGCGTGCACCTCAGCATCTTCAGATGTGTTCGATAGCGTTTTGGGAAACACAGTATCCTGCCATAAGTCATGTGAAATGACATACAGTTTGCACACGTATCCAAGGGAAGAGGAACTCTATGCCTGTCAGAGAGGCTGCCGTCTGTTCTCCATTTGTCAGTTTGTTCGTGACAGCGAAGATCTGAATCAGACCAAATCCGAGTGTGAATCAACCTGTCATGAAGCCTACACCCATTCTGATGAGCAGTATGCATGCAATTTGGGCTGTCAGAATCAGCTTCCATTTGCTGAGCAACGTCATGAGCAGTTGGAGGCCATGATGCCCAGGATTCACCTGCTGTACCCACTGACTCTGGTCAGAGGGTTTTGGGAGGATGTAATGAGTCAGGCACACAGCTTCATCACTTCCACATGGACATTCTACCTCCAGGCTGACGATGGCAGAGTTGTCATTTTCCAGACTGAACCACAAATCAAGTTTTTTTCCCAATTTAAAGTGGAAACCGATGTTAAAGAGGAACCACAGAAGACCTTCCCTGGGTTAAACCCAGTTTACAAAGAATACCATCGCACTTTAATccaggagagggacagagatatGACCGGGGACCGCAGCTATGATGAGGACTATAACCTCTTCAGCTGTCTTTCAAGAAACCCTTGGCTACCAGGTTGGATCCTAACGACAACCCTGATCCTGTCTGTGCTGGTCCTGATCTGGATCTGCTGTGCCACTGTGGCAACTGCTGTAGACCAATATGTACCTGCCGAGaaattGAGCATCTATGGTGACAGGGAGTATGTAAAGgaagagaaactgactccaTATCCAGCATCCTCCCTGATAATCATTACCTCCAAAGGGCCAGAGGAAGAGGCCGGGCCGCTCCCTTCCAAAGTCAACCTGGGCCGGTCTGACATCTAGAAACCAAGCTGTAGCAGAGAAAGAAATTCCTCTTTTAGGAATAATAtttagttgatttttttttttttcctctggcACAACACCTTTTTGCTTCTTATGGTCTAAACAGGAGTAACTTCTTGCAAAACATTTTGTATTACTGATATGTCTCGTCTcccttttgatgctttttaaaattgaagtaatgaaaaggtatttttttgtatattggTATAATTGAGGCATTATAGTATAATGGCaagtaaaatatgttttggGATTTTTCTTTCGACTAGCTCTTTGTTGGTGTGCTTATTTTATGGAATAATTGGTAAAGGAACTATTAGTGATTTGAAGTAATACAGGTTTCAACCCATACCCTTTGGTAAATGTAGATTGTGCTAATATTGCAGGCTCTCcttgtttgttctgtttttactgcagtgatttacagctgatactggattttacaataaaattatTTGCCCTTATcttaattaatattaattatattataataacacAGTTAAGTCTTTCCTGGGTTGCTGTTTGTTCTCATGATGGAtcagaaataaatacaatagTCACGTTGACGTGCGTGTGACTTTCTTCAATCATATACTATAGTTAACTTTCAGTTTATTTGTAAACAAATTTTCAACACAATGTAGCTGTAGGATTCCAGTAACTAGTGCTGTAATTTAAGAGAAATTCAGAgaagacctttttaaaaagtcaaacTACAGATATGGGTTCAAGGTTCTTTATTAGTCATCTGAACAAAATCTTAGGCCTCAGGCACATCCAACAACGCTCCAACTTTAAAAAGCAAACCCAAGCAAAATCTGAATCTAACACCAAAGGAAAAAGTAGTGCAAGTTAAAATAGGTTAAATATGAAGTATACTTGTTTAAGAATTTGTTTTGCAAATGTATATATGCATAATGAGAAATGTATGTTTACAGAGGTGTAAACAGTCtttaaataaaagtgtattacAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155850 lncRNA downstream 1181 17573463 ~ 17574125 (-) True G115570
TU155848 lncRNA downstream 2177 17572897 ~ 17573129 (-) True G115568
TU155842 lncRNA downstream 22356 17548220 ~ 17552950 (-) True G115563
XR_005640743.1 lncRNA downstream 218097 17356351 ~ 17357209 (-) True LOC120568661
TU155728 lncRNA downstream 272748 17302264 ~ 17302558 (-) True G115458
TU155864 lncRNA upstream 27881 17607456 ~ 17608257 (-) True G115577
TU155934 lncRNA upstream 386238 17965813 ~ 17967692 (-) True G115624
TU155949 lncRNA upstream 473409 18052984 ~ 18058106 (-) True LOC120568693
TU155961 lncRNA upstream 495493 18075068 ~ 18076412 (-) True G115640
TU155962 lncRNA upstream 496965 18076540 ~ 18077059 (-) True G115641
XM_039815473.1 mRNA downstream 3918 17567352 ~ 17571388 (-) True yipf1
XM_039815474.1 mRNA downstream 8260 17564711 ~ 17567046 (-) True zgc:113691
XM_039816892.1 mRNA downstream 10769 17555980 ~ 17564537 (-) False ndc1
XM_039816891.1 mRNA downstream 10769 17555980 ~ 17564537 (-) True ndc1
XM_039816888.1 mRNA downstream 33218 17492287 ~ 17542088 (-) False LOC120569062
XM_039814559.1 mRNA upstream 4215 17583790 ~ 17591365 (-) True cdcp2
XM_039815773.1 mRNA upstream 420325 17999900 ~ 18019896 (-) False ranbp3b
XM_039815768.1 mRNA upstream 420325 17999900 ~ 18019896 (-) False ranbp3b
XM_039815771.1 mRNA upstream 420325 17999900 ~ 18019515 (-) False ranbp3b
XM_039815766.1 mRNA upstream 420325 17999900 ~ 18019512 (-) False ranbp3b
TU155671 other downstream 466402 17039800 ~ 17108904 (-) False ly97.3
TU155672 other downstream 530244 17043126 ~ 17045062 (-) True G115406
TU155670 other downstream 533830 17039800 ~ 17041476 (-) True ly97.3
XR_005640632.1 other downstream 773042 16756331 ~ 16802264 (-) False epb41l3b
TU155525 other downstream 935494 16637108 ~ 16639812 (-) True G115312
XR_005640621.1 other upstream 903581 18483156 ~ 18494488 (-) False sppl2
TU156258 other upstream 1137307 18716882 ~ 18718544 (-) True LOC120568909
TU156342 other upstream 1265330 18844905 ~ 18846277 (-) True G115941
TU156358 other upstream 1352399 18931974 ~ 18935477 (-) True LOC120568972
TU156517 other upstream 1642216 19221791 ~ 19222726 (-) True G116084

Expression Profile