RNA id: XM_039815493.1


Basic Information

Item Value
RNA id XM_039815493.1
length 3001
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC120568165
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13311801 ~ 13318339 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGGTCTGTCAGGACGCAAAAACACATCAGACCTGTCAGTTATTAATAGTCGTCTAAGCTAATAAACTGTGATGCTATTTTCAAGCAAGTAAAGGTCGTGTGTGGGTTTGGGATATTCAGCCATGCAGTCAGAGCTCATCTTTGACTTTGCCAGTGACCATGTCAACATGTCACAGttaGGGGGTTACTCGGATTACCCTGCAGTGATTGTGGAGCAGGTTCCCCATCCCCACCTGTTCTCATATACAGGTCTAACGTGTGAACAGTCACAGACAAAGCATCACCAGCAGCTGCTCAAAGTGGAGCAATGTGAAAGTGGAGAGGAAGAGACCATGGagacacttgttgctgctgaTTCCCTTCTCAACATGGACTACCCTGACACCCTCTCTCTGGAACACTActCCCAGACCTTCTTACCATCACTGGGTGATGTCATCACTACTCCTGTTACCCAGGTGACTGTGTCTGCAGAGGGGATTGTGGAAGCGTTTGACCAGCCACAATGGCACTCGTTGCACACAAAGAAGCCTGCAGCACAGCTGCAGTCCAAAAAGAGAGGAAGAAAACCTCGACATAGAAGGGCAGAGTCTCCCACACCAGACATTATAGTGAAGAAGGACAAATACAACAAAGGAGGAAACACACTGTACCTGTGGCAGTTCCTGATGGAGTTGCTGCAGGACCGACAGGTCTGCCCTCGCTACATTAAATGGACTAATCCCCAAGCAGGAATCTTCAAGTTGGTCAACTCAAAAGCAGTGGCCAGACTCTGGGGCAAACACAAGAACAAGCCAGATATGAATTATGAGACAATGGGCAGAGCACTCAGGTACTACTACCAGAGAGGCATACTGAATAAGGTTGAAGGCCAGCGTCTGGTCTATCAGTTCACCTCTCTGCCCAAAGATATGATTTATATCACAGATGGAGATGGCATCAAAGAGGAAGAAGATTACGATCACAACGAAAATAGTGGCAATGATGAGGGCGTGAGTGATGACTCCGATGACAGCACTATACCTTCTAGTGACCAatcagtggaggaggaagattCCCACCCACCACAGAAGAAAACGTCATTCAGCTCTGTTCGATCCCCAGCTACCCAGCGGACCAGGCCAGCTCCCAGGCCCTCAGGCCAGCGTGATACGGTCCTGCGATCTGCCAGCACCAGCTTGATCCAGGAGCAGCATTTGCCTATTGTGTCCGCTGAGATGCTGCGGACCCTCCAGAACCTGCAGAAGGTCCAGTCCCTGCAGCCTGCGGGTCACGCCTCGGTCTTCAAAACCGCTCAGCTGCTGGGGAGTCTGTGTGAGCGACAGGCTGCCGCTGAGGTGGCTGTAGACAGTGATGAAAAGTCACACCCAAGACTCAAAGTGGAGACACCACAGCTGGTGCCCCTAACTAGCTCTGACCAATAGAAAAGACCAATCacccctaaacacacacacacacatatgcacacacatgcatatacactcCACTGACTCAGGACCTGTTACAGAGCTGCATTTTGCTGTAGCAATGTCTGCGCACCAGGGCCTATATTTCTTAAGTGTGAAAGAGTGGGTGCACTGATCTAGgcttattttttgtattttagatTATATTATTAATTGGTAACAAAAGTAATTCTAGATCACTGCTTCCTCCTTGACACCTGATTCGGCAGGAAACTGTCAGGAACCAAAATCTCATAACAAAGCAGTTTACTTTCTAAGAGACTTTAAAAGCGCATGTGCTGTATCTCAGCCTTCTGTCATTCTCTGAAACCGTTAACCATACAAGATACCAAAGACAGACATGCACTGCAATCTCCAGTCCCTCTGCACCTTCTGCAGACACATCCTCTGCTTGCACTTCACCTCCAGCATCATGGATCAAATGATCTGATCAGCACACTGTACCTTCCTTCTCTGCCTTTACTCTCACTCTTtcccactctttttttttttaccatcacaTGCTGAATCATTCCTTTGCCTTAAAAATGACTTTGCACTAGTGTTTACCCCTGCTGTATATTTCTTCTTTAATAGTGCCTGATGATCTCAGTCCATCCTGTCCCCTGCTTCCTTTGTTCCTGGTAATCATGAGGTTATTGAGGGAAAACAttccatattattattattattattattattattatttttttttttttttttttttttaaagattactgaattatgttttgtattgtgaAATGTTGAAAATAAGGGAACACTGTTATTTCTAGAATAGTAATTTAGCACTGCTGCTGTTTGTAGTTAATGTGTCTACACAGTGGACCTTCTTTTTGTTGACAATCACCAGTGAAATGACCTTTTATTTAGCTACATTGCCTCTATAGAGTCATACTGCTACTATTTAGCCTTTCTGCTATGTACACATTCTGTTTAGTTATTACACGTATGCATATATGGACCTCTAAAGCCTTGATATCtttatgtattgtgtgttatatactgtatatctgtgaACATGCTTGACTTTGTGCCTTGTTGCCATTTTCTCCCTCAGGTTCGTACAAAATTAGTTTTACTTCAGACTATATACTCTATGCAAGGAGTAAAACGCCTGGCTCTTTTATAATGAAGTAATGCTAAGTTCAATGTTTTCACTTTTAGTTGATCTTAGTTTAGCCTCACATGCCTCACTCGAATGAAAACTGAGTTTGCAAGATTTAGGCTGGCTTCTGTGAGGCTAAACTTGGCTTAGAAGATGCTTGTAACTGTGCCTTTACCCCCAGGGAATCCTATGCAAAACTGTTTTCACTGTATTACAGAGTAAACCATTTATTTGGAATCTCCTCGCTTTATCTGGAGGTCTCTTGATACTGTAAGTTTTACTGATATTGATATGTAAGCTTGTAGCACAGGGAGAGGTGGAGTTTCTGTTGCCTTATTTTGGTGTGTTTGCTTTCATGCAGGCTGGCAGTGTTGAAAAGATAATATTCTATTATATGAAATAAACTTAATTTTGTCATTGTCTGTTAAA

Function

GO: NA

KEGG:

id description
K09428 ELF1_2_4; E74-like factor 1/2/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154049 lncRNA downstream 22808 13288182 ~ 13288993 (-) True G114202
TU154045 lncRNA downstream 24581 13286651 ~ 13287220 (-) True G114199
TU154040 lncRNA downstream 25637 13280931 ~ 13286164 (-) True G114196
TU154019 lncRNA downstream 87936 13197745 ~ 13223865 (-) False G114183
TU154070 lncRNA upstream 76122 13394461 ~ 13406160 (-) True G114215
TU154071 lncRNA upstream 76122 13394461 ~ 13396368 (-) False G114215
TU154072 lncRNA upstream 86895 13405234 ~ 13406830 (-) False G114215
TU154064 lncRNA upstream 151192 13469531 ~ 13472351 (-) False dis3l2
TU154088 lncRNA upstream 214799 13533138 ~ 13549466 (-) True LOC120568710
XM_039816356.1 mRNA downstream 1717 13289358 ~ 13310084 (-) True sugt1
XM_039816354.1 mRNA downstream 1721 13289358 ~ 13310080 (-) False sugt1
XM_039816355.1 mRNA downstream 1722 13289358 ~ 13310079 (-) False sugt1
XM_039816485.1 mRNA downstream 75554 13232096 ~ 13236247 (-) False LOC120568781
XM_039816484.1 mRNA downstream 75556 13232096 ~ 13236245 (-) True LOC120568781
XM_039815497.1 mRNA upstream 8502 13326841 ~ 13333005 (-) False ednrba
XM_039815496.1 mRNA upstream 8502 13326841 ~ 13333005 (-) True ednrba
XM_039815498.1 mRNA upstream 35890 13354229 ~ 13362042 (-) True LOC120568167
XM_039816491.1 mRNA upstream 103209 13421548 ~ 13437449 (-) False LOC120568786
XM_039816490.1 mRNA upstream 103209 13421548 ~ 13437448 (-) False LOC120568786
TU153973 other downstream 223238 13084561 ~ 13088563 (-) True G114152
XR_005640810.1 other downstream 543176 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 708892 12601180 ~ 12602909 (-) False nedd8l
TU153382 other downstream 1093534 12218062 ~ 12218267 (-) True G113805
unassigned_transcript_557 other downstream 2422849 10887089 ~ 10888952 (-) True LOC120567758
TU154602 other upstream 1295274 14613613 ~ 14615772 (-) False LOC120568687
TU154687 other upstream 1477579 14795918 ~ 14797044 (-) True G114680
XR_005640598.1 other upstream 1971847 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 1971847 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640842.1 other upstream 2092823 15411162 ~ 15411347 (-) True LOC120569139

Expression Profile