RNA id: XM_039815499.1


Basic Information

Item Value
RNA id XM_039815499.1
length 1865
RNA type mRNA
GC content 0.45
exon number 5
gene id selenop2
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 11519469 ~ 11524837 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGCTGTCAACCCCAGaggctttaaaaacaacagGGCTTTACTGCCTGTGTTCATGTGGGTCAGAGGACAGGGAGTGGACAGAGATTCAGTCCCAGCCAGCCAGGGAGGGACAATGAACCCTCTCTCATTGCTGTGGCTGTACGCGGCCCTGCCAGGTCTGCTGTGGGCCTCGCATGTCAGTCTCACAGTGGAGGGCGACAATGACCCCTCCAGGATCTGCAAACCCGCCCCTGACTGGGCGATAAAGGGACATTCACCCATGCAAGAGCTGCACGGAAACGTGGTTGTGGTGGCGCTACTGAAGGCCAGCTGACAGTTCTGTCTCACTCAGGCCTCCAAAATTGGAGGCCTGCGTGACAAGCTGAACCGCAGCAACCTGACGGAGGTGTCTTTTATGATAGTAAATGAGCGGGAGGCTCTGTCCAGAGCCATGTTCTGGGAGCTGGAGAGAAGAGCGCCCCCTGGTGTTCCTGTCTACCAGCAGGATCCCTTTCAAAATGACGTGTGGGAGGCTCTGGACGGTGACAAAGATGACTTCCTGGTCTATGATAGGTGTGGTCTGCTCACCTTCCACATAGTGCTACCTTACAGTTTCCTGCATTACGTCTACGTAGAGGCTGCAATCAGAGCCACCTATGATAAAAACATCTGCAATTGCACTGTTAATTCTACTTTATCAAGTGACCAGAAGAACGAGACGATGCAGTTAAATGTCAGCCAGACAACTACAACACCCATATCGCAACTGGACGCAGATGATCAAGACACAGCTCCTGGGGCGACTCATCATCaccatcctcatcctcatcctcatcctcatcctcatcatcatcatcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagaagcagcagcctGGCAACCACAGTCATCCTGCTGGGATGGAAGTGGATAATCAGGATGCCAGTTAAATTAAGTGTTTTTGCTGTCTTTTTCTTCTTAGTATTTTACTTTTGgtgacgtgttttttttttactttgatgaCAGAACATACAGGTAAACTGAGCCGTTGAATCTGTTTCAGCTGTAATCGGATTGTGTTTTTCCTCTGCTAGCATCGCCACACCTCAGTCCTCTGTGTGGAAAACGTATAGCCAGTGCTTCGCTGTCTTCTCCCACTAATGAAGTCTATGAAGTAAAACCTGCCTGCAGGACGCTGTAGATGGATGTGTGTGGAGAGATTCGGATGTGCTGATGGTTATTGCCACCCAGACAGAGTCAGAGGATGTGGTACGCTGCTAGTGAGCCAACCTCAGTCAGATTACTGTTCAAACATTCTCCTTCTGGTTCCAGTTTCTGCTTCTGTAAGTCATGTCTCGTGCAGGATCTGGAAGTGATATGCTGTGCTGTTTCATTACTATTTACATATAACAAGAGGTTCAAATGCGGTCTTTTATTCATTTGCATGCGTACAAGCATATGGAAAGTGGTGTAATCAATTTAATTAGTATACTTAATCCAATTAAATCATTAGATATTATAAATCACACCAGCAAACAGTATTTTTCACTTATATTATATGCAGTATTACTGgattaacatactgtacattgctCCGGTTAATACATTTTGCATATTTGCTGTGGATTTAAAAGCGTTGTTACTTGACCTCTGATTAATTACCTGAATGTAGAATGAACGTTTGGATTGTTGTTctccattaaaaagaaaatacatttataaagTGTTTAGCCTGTACAGTTTGTGTAATTGAATATGGAAAGTTATTTTGTCCTCTTTCACAATAAAGAGAATAACCCTTTTTACAGTAGAGAGATATTAAAGCAATAGATCCATGTTTTGGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153220 lncRNA downstream 73198 11424184 ~ 11446271 (-) False G113667
TU153221 lncRNA downstream 73198 11445924 ~ 11446271 (-) True G113667
TU153204 lncRNA downstream 116239 11357734 ~ 11403230 (-) True G113653
TU153207 lncRNA downstream 151865 11365371 ~ 11367604 (-) True G113656
XR_005640742.1 lncRNA downstream 189635 11324731 ~ 11329834 (-) False LOC120568658
TU153233 lncRNA upstream 10162 11534999 ~ 11540267 (-) True G113677
TU153258 lncRNA upstream 85760 11610597 ~ 11610879 (-) True G113700
TU153268 lncRNA upstream 270868 11795705 ~ 11876028 (-) True G113708
TU153285 lncRNA upstream 433613 11958450 ~ 11958661 (-) True G113722
TU153295 lncRNA upstream 466907 11991744 ~ 12035749 (-) True G113729
XM_039816321.1 mRNA downstream 17731 11500364 ~ 11501738 (-) True LOC120568667
XM_039815056.1 mRNA downstream 56857 11390884 ~ 11462612 (-) False zswim5
XM_039815055.1 mRNA downstream 56858 11390884 ~ 11462611 (-) True zswim5
XM_039816124.1 mRNA downstream 232949 11153998 ~ 11286520 (-) False ctnnd2b
XM_039816123.1 mRNA downstream 232949 11153998 ~ 11286520 (-) False ctnnd2b
XM_039815501.1 mRNA upstream 3006 11527843 ~ 11530805 (-) True si:ch73-382f3.1
XM_039816569.1 mRNA upstream 584435 12109272 ~ 12113247 (-) False pigr
XM_039816568.1 mRNA upstream 584435 12109272 ~ 12113247 (-) True pigr
XM_039816570.1 mRNA upstream 591965 12116802 ~ 12122078 (-) True dad1
XM_039815524.1 mRNA upstream 606600 12131437 ~ 12152081 (-) True tgm1l1
unassigned_transcript_557 other downstream 630517 10887089 ~ 10888952 (-) True LOC120567758
TU153067 other downstream 630622 10887007 ~ 10888847 (-) False LOC120567758
TU152848 other downstream 2008988 9507048 ~ 9510481 (-) False LOC120568397
TU152847 other downstream 2023717 9401742 ~ 9495752 (-) False LOC120568397
TU152846 other downstream 2115857 9401742 ~ 9403612 (-) False LOC120568397
TU153382 other upstream 693225 12218062 ~ 12218267 (-) True G113805
TU153584 other upstream 1076343 12601180 ~ 12602909 (-) False nedd8l
XR_005640810.1 other upstream 1236078 12760915 ~ 12768625 (-) False LOC120568934
TU153973 other upstream 1559724 13084561 ~ 13088563 (-) True G114152
TU154602 other upstream 3088776 14613613 ~ 14615772 (-) False LOC120568687

Expression Profile