RNA id: XM_039815503.1


Basic Information

Item Value
RNA id XM_039815503.1
length 8642
RNA type mRNA
GC content 0.51
exon number 49
gene id cacna1eb
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21921651 ~ 21982046 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGTATTTATAGCCTAACAGCCGTTATCATCACTCGCGGAATCCTCGCGGAATCGTCCTCAAACCTCTAAACTTGGACTGAGTGAGAGGGGCTGAATTTTAGTATCCACCTGAACGGGGCTCTGTGACGATGAAGGAGCGCGCGTTGCCTCAAGCATTATGGTGAAACCGCCAACTACTGTCCTCTGTAGAGATGCTCACCAATTCAGACCAGTCCCTCTCCCGCTCCCTCACACCCAACCTCCACTCTCCATCCAGCTCTGGTCCAGGTGGAAATATGCGCGTCCAGTCCTCCCTGTCCCTCCCCGAGCCTGAGGCCTGGAGGAAGCCCAGCTCCACTCCCCGCCACGGCCTGGCACAAGGAGCCCGCTCCAGCTCCCTGCAGGTCCCTCATACCCTCCCTGAGTACCTGGGGCTGCCCCCTCGAGCCGCCAGCTTTGATGTGCCATGTGGTCGGGAAGACGGCTGGTCTGATCAGGGTTCAGGGTCTCTGAGCCCCCACTGCATGCAGCGGCGGCGCGGTGGACTTGTGGAGCAGAAGGACATCATCATGGCTCACCAGGCTCACAAAATCCAGAGCACGCCACAGGCCCGCAGGAAGGAGTGGGAAATGGCTCGGTTTGGAGACGAGTCCGCTCCCAGCACGATGGACTCCGGGGATGGGGACGTGGAGCGCGGCGGAGAAGAAGGACAGGACGAGGCGGCAGCGGTGCTGTCGGCTTCCATGAAACAAGCCAAGGCGCAGCGGGCCCGGACCATGGCCATGTACAACCCTGTCCCACACCGGCAGAACTGCCTCACCGTCAACAGGTCGCTCTTCATATTCGCAGAGAACAACATCATTAGGAAAACCGCAAGGCGAATCATTGAATGGCCACCATTTGAGTACATGATCCTGGCCACCATCACCGCCAACTGTGTTGTCCTGGCCTTGGAGCAGCATCTCCCCGGAGAGGATAAGACCCCCATGGCAAAGAGATTGGAGAAGACAGAGCCGTACTTCATTGGGATCTTCTGCTTCGAGGCGGGGATCAAGCTGGTGGCCCTCGGTTTTGTTTTCCATAAAGGCTCCTACCTGAGGAACGGCTGGAACGTCATGGACTTCATAGTCGTCCTCAGTGGGATCCTGGCCACTGCTGGTGCCCACATGAACATTCCAGTGGACCTTCGGACGCTGAGGGCAGTGCGAGTGCTGAGACCTCTTAAACTTGTCTCCGGGATCCCCAGCCTGCAGATTGTGCTGAAGTCCATCATGAAGGCCATGATCCCGCTGCTCCAGATTGGCCTTCTCTTGTTCTTTGCCATCCTCATGTTTGCCATCATTGGTCTGGAGTTCTACAGCGGGAAGCTTCACCAGACCTGCTTGCCATCTGTCGAAATCCTCGACAATGAGACTGTCGACTCGACAGAGTTGGCGTTCGCCTGCGGAGTGAGGAAGTGTCCAGAGAAGTACGACTGCAACGACACCTGGATTGGACCCAACGACGGCATCACGCAGTTCGACAACATCCTGTTTGCTGTACTCACAGTCTTCCAGTGTATCACCATGGAGGGATGGACAGCCGTTCTCTATAATACCAACGACGCCTTGGGTACCACATGGAACTGGATGTACTTCATTCCCCTCATCATTATTGGGTCGTTCTTTGTGCTGAACCTGGTGTTGGGAGTCCTGTCGGGAGAATTTGCCAAGGAAAGGGAGAGGGTGGAGAACAGGCGGGCCTTCATGAAGCTACGCCGCCAGCAACAGGTGGAAAGAGAACTGAACGGCTACCGAGCCTGGATAGACAGGGCAGAGGAGGTAATGCTTGCAGAGGAGAATAAAAGTTCTGGGAGATCGCCGTTAGATGTGCTAAAGAGAGCGAGTAAGAAGACTGGTGCACGGAGAGGAGCGCCAGGGGACGAGAAGTATACGGACATGTCTACTGCCAGCATGTCGCGATCTAGGATGAACTTCCGCAGCGGCCGGCGAGGCCCCGCTGCCTACCTGCGGCGTAAAGAGCGCATGTTACGCATCTCCATCCGCCGCATGGTGAAGACAGACACTTTCTACCTAATGGTGCTCAGTCTGGTGGCTCTCAACACCATCTGTGTGGCCATCGTCCACCACAACCAGCCCGACTGGCTGACCATCTTCCTCTACTATGCAGAGTTTGTTTTCCTGGGGCTGTTTTTGGCTGAgatgtttttgaaaatgtatgGTCTGGGTTTCCGGCTCTACTTCCATTCATCTTTCAACTGCTTCGACTGTGGGGTTATTGTTGGCAGCATCTTTGAGGTGGTTTGGGGCTTCTTCAGGCCTGGCATGTCATTTGGGATCAGCGTACTTAGGGCACTGAGACTTCTGAGAATTTTCAAGATCACCAAatACTGGGCCTCTCTCAGGAACCTGGTTGTGTCCCTCATGAGCTCCATGAAGTCCATTATCAGCctgctttttcttctctttctcttcgtTGTGGTGTTTGCTCTGCTGGGAATGCAGCTTTTTGGAGGAAGGTTCATCTTTGAAGATTACACTCCCACCAACTTTGACACGTTTCCAGCTGCCATCATGACAGTGTTTCAGATTCTGACTGGTGAGGACTGGAATGAGGTGATGTATAATGGGATTCGCTCGCAGGGTGGAGTGCAGTATGGAATGTGGTCATCGATCTACTTCATAGTGCTCACCCTGTTTGGAAACTATACACTGCTGAACGTCTTTTTGGCCATCGCTGTGGATAATCTGGCCAACGCACAGGAACTGACAAAGgatgaagaggaggaggaggagttttTCAACCAGAGATATGCCAGAGGCAGAGATGGCCTTATATCTGATGGGAGGAGAAGGCCCTACCTATACAGGAAACGAGCCATCCACAGAGGCCGACCAAACTTCCCAGATGAGCCAGAGGACAAGACAATGGCCCCAGACGAACAGCCCCTCAATGGCTCTAACGCCTTCGTCAGCCGCCgcgagaggaggagaaaggttCACATGTCAGTGTGGGAGCAGAGAGCCAACCAGCTACGCAAACGGCGCCAGATGGCAAGCAGAGAGGAGCTGTTTGCAAGCCCTACAGAGGACACCGTTGAAACTCCCACCATACCCCACCTCGCCGAGCCCAGCCCGACTCACCTGCCTGAGTCTCCCATGTCTGTGGGGATGCCTATCCCTGAGCCCCCGATGTCCATCACCATCCCCATCCCTGAGCCTCCGACGGCTGAGCCTCTAGTAAACCTGAGCGAGGAGAAAACTGGAGGAGCTAACCACCGGACCACAGGCGGAGGCAGGCACAGGATGGCCCGCAAGTTCAGACCCAGTCAGGGGCCAGACGAAGGGGCGAGACACAGACGGCACCGTCACCGCGATGCTCGCGCTGAGGCCAAGAGTCTGGACTGCACCCAGGCACCTCATGAGGTGCCACAAGTCAGACGGTCGCACAGCCAGGAGAGGAAGATACTGGAtgagaaggaagagaaggatgacagagaggagagagaaaaagcagaGGAAGAAGGAGGGTCAGTCCAAGAAGATGGTGGAACATGCATCATCAACCCATACGCAGAAGTTGGAGAAGACTGTCAAAGGGACATTCCCGATCCTCCTCAGTGTGAGCAACTGCTGGACTGTACCTGGTCAGAGCAGGGTGAAGGCGGGCACTCAGACCAAAACATCCCAGTGGAGCCCGCCTTAGAGGCCACAGAGTTCAGTGTGAGGGCCATCGAGTCTGAAAGCCGCCCGGTCTCCATCAAACGTGACAAGTCCAACCTGGTGGGAAGCGTGGCCATCGAAATGTCTGCACAACCGCTGCTTGAGCTCACACCCATGACAGTGAACAGTAAAGAGTTGGAGGCATACCACTctgaacagacagacaaagaggacGACACAGAGAAGgacgaggacgaggaggaggacgaggacgaggaggacgaggaggaacCTCCGATTCCTCCCAAACCTGTAGCTCCAGATAGCATGTTCATCTTTAAGGCCTCCAACCCTATCAGGAGGATCTGTCACTATATGGTCACTATGCGCTACTTTGAGATGACCATTCTCCTTGTGATCGTGGCGAGCAGCATTGCACTGGCTGCTGAGGACCCCGTGTGTACCAATTCAGACCGAAACAAGGTCCTCCGTTATTTCGATTATGTCTTCACTGGAGTGTTCACCTTCGAAATGATCATCAAGATGATAGACCAGGGTCTCATTCTGCACGATGGCTCTTATTTCCGAGACATGTGGAACATCCTGGACTTCATTGTGGTGGTGGGAGCTCTGATTGCCTTTGCTCTAACGAATGTGATGGGAAACAACAAAGGCAGAGACATCAAGACAATAAAGTCCCTCCGAGTTTTAAGAGTTCTGCGGCCTCTTAAAACCATCAAGAGGCTTCCTAAACTCAAGGCTGTTTTCGACTGTGTGGTCACATCTCTGAAGAACGTCTTCAACATCCTCATTGTGTACCAGCTCTTCATGTTCATCTTTGCTGTCATTGCCGTGCAGCTCTTCAAGGGGAAGTTCTTCTACTGCACTGACAGCTCCATGAATTCAGAGAAGGCATGCCAAGGCTACTACATTGACTACAGCAGAGACAAAAAGGAGGTGAAGAGGAGAGAGTGGAAGAGACACGAGTTTCACTACGACAACGTCTGCTGGGCCCTCCTCACACTTTTCACTGTCTCAACTGGAGAGGGATGGCCTCAgGTCCTGCAGCACTCTACCGATGTTACAGAGGACAGCATGGGGCCAAGTCGAGGGAACCGAATGGAGATGTCTGTTTTCTACGTGGTCTACTTTGTGGTCTTCCCGTTCTTCTTTGTCAACATCTTTGTGGCTCTGATCATCATCACCTTCCAGGAGCAGGGTGACAAGATGATTCAGGAGTGCACTCTGGAGAAGAACGAGAGGGCTTGCATCGACTTTACCATCAGCGCCAAGCCGATGACCCGCTACATGCCCCAGAACAGACAAACCTTCCAGTACAGACTGTGGCACTTTGTGGCATCGCCTTCTTTTGAGAACACAGTGCTAGTCATGATCGCTCTCAACACTGTGGTCCTCATGATGAagTACCACTCGGCCCCGGCAGCCTATGACATGGTCCTTAAACACCTCAACTCGGCCTTCACTGTCCTCTTCTCCATGGAGTGTATACTCAAGATCATGGCATTTGGTTTGGTGAACTACTTTCGAGATACTTGGAATATTTTTGATTTCATCACTGTTCTTGGCAGCATCAGCGAGATAATTGTGGATTTACAGTCGGTGAACACCATCAACATGAgttttttgaagcttttccgAGCAGCTAGGTTGATCAAGCTGCTGAGACAGGGTTACACCATCCGTATTCTGCTGTGGACCTTTGTACAATCTTTCAAGGCTCTTCCTTATGTTTGTCTTCTCATTGCTATGCTATTCTTCATATACGCCATAATTGGAATGCAGGTGTTTGGAAACATCAAGCTGAATGATGAGAGTCACATAAATCAACACAACAATTTTAAGACCTTTTTCAGTGCGTTGATGCTGCTCTTCAGGAGTGCGACAGGGGAGTCCTGGCAGGAGATTATGCTTTCGTGTCTGTCTGGTCAGGAGTGTGAACCAGACTCCTCCATCTCCCCTCTAACCATGTCTCCAGACCACGAGGGAGGCTGTGGGACTGACTTTGCCTACTGCTACTTCGTCTCATTCATCTTCTTCAGCTCGTTTCTGATGCTAAATTTGTTTGTGGCTGTGATCATGGATAACTTTGAGTACCTGACGCGAGACTCCTCAATTCTGGGTCCCCATCACCTGGACGAGTTTGTTCGCATCTGGGGGGAGTATGATCGTCTGGCATGTGGTCGTATCCATTACACTGCCATGTATGAGATGTTAACCCACATGTCACCACCCCTGGGCCTGGGCAAAAAATGCCCTGCTAAGATCGCCTACAAGAGGTTGGTGTTGATGAACATGCCTGTAGATGAGGACATGTCTGTTCACTTCACCTCCACGCTGATGTCGCTCATCCGCACAGCATTGGACATCAAAATAGCTAGAGGAGGTGAGGACCGTATCGCTCTGGATAGTGAACTACAAAAAGAGATCAGTATCATTTGGCCTTATCTGCCTCAGAAGACATTGGACCTACTGGTACCTATCAACAAAGATACGGACATGACAGTGGGAAAGATCTATGCTTCGATGATGATAATGGACTACTTCAAACTGAACAAAGCCAAGAAGCTCAGGCAACAACTTGAAGCTCAGAAGAGTAGCTTAATGTTTAAGCGTCTGGATGGCTCTGCGCTTCCCGAGGAAATTCTGTCCAACACCCAGACGCTGCCTATGATGGCCCACAGCGCTGGGTCAGCCCTGACCAGAGGAGGATTTGTGGCTTTGAGCCCCATCTCCCCTCAGGAACTGTTTTTGCAGCCCATAAGCTCCGAACCTGATGCTAGTCAAGAGCAAAATCTGGTGGGCGAGTGCAGTAGGGGGATTGAAGCCCCACAGGAGCTTCCACTAGGGAGGGGTCTGTGTGTGCGGGCCTCTTCCATGCCCCGTCTGGCTGTAGAGTCGCAGACAGAGGTTGCAAGTGGCTCCATGAAACGTTCAGCCTCCACCGTTGCAGATCAGCAGGTGAACGGTCTTTGGCAGGAGGAGAAAAGTCCTGAGAGATTCTATCGACCTCGTCACAAAAGCTACAAGGCTGCTGTTTCTCGGTCAGAGCACAAGCAGCAGGGCGACAGGGAGCGTGGCCGGTCTAAGGAGCGCTGTCACCTCCTTTCTCCAGACGAGTCTCGTTGTAACTCAGAGGAGAGAAGTTTGCAGCCCTCACGATCCTCTAGTGTAGAGAGAGCACACACCCAAGATAAACAGGGCAACAGCTCGGACAGTCCGGTGCCCTCCACCTCAGAGTCCAGCACGCCGAGCGGCCGACGACCGATATCACAGACCCGCTCTCGCCCTCACATCTCCTACTCTCCGCTTCACCCCTCCGTTGGCGAAGACGAGGATGAGCAAGGCAGCCCAGAGACCATGAGGCGGGGCAAGCCCAACTGGGAGACCCAAGAGCGGGTCGCAGGTGACAGGCTGAGCGAGGCAGGCCGAGACCCGTCCCCACCTCGGCGCTACCCCTCAGAGCCGTTCCTAGCCTCCCAAGAGGGGGACCACAGCCCAGACCCCTCCGGCCCCATGGAGACGTTGACCTTCGAGGCGGCTGTGGCCTGCAGCCTGGGACGCTCAAACACCATCAGCTCAGCCCGCCCACGCTTGCGGACTGGCTGGCAGGTCCCCAACGGACACTTTCGGAAGCGCCTGGCACAGACAACCTCTGTTGCCGGCTGTGATCCTCTCAGCGACACAGAGGAGGACGACCGGTGCTAGGGACTGGAGGCACAGcatgagggaggagggggaatCCCAGAGAGGTGTTAAGACTCTGTACAACAGTACGAAGGTTAATGTGACTCTTTTTGCATCACTGCTTAGAGGCCACGAGCACTCTGGATGTTTGATAAAATATGAGCCCAAAACAAACGAAAAGAACTTCCTGAAACTGTAGTTGCCAATTCACACACTGACAATAAATAAGGTCTATTTCCTGACTTGTACTTGATGATAGAGAGTAATAATACATCTCAAATAGTTGCGGgatgcaaaaaataaatgaatggatCACATTATGTAATTTGTGTCAATGGGTATTTTCATTTCTGAAGATGTTTCTAAATGATTCAGTGTTGAACTTAACATttatctgtgtgggtgtgtgaatATGTAACTACATTTTcttataaattaattgttttgtaaaataCATTGTGATCATCACACCATTGCCATTTATTAAAATAGAACAAGCCATGACGAAGAGGGGATCTGATACTTTACCAGACAATGTGGATACTAATAAGTAACACTCAATaatgctggatttttttttacagtgtgaatGTATGTGCAGGGGAAAAAACTGCCTGATTTCCTTTGCCATTTAACTTTTTGGTATTGAACATGATAAGTTGTCAGGTATGAATACAGTAATAGAATAACAGAAAAGTATGCTTATTTGTTTGTTCTTGTTAAATCATGCCTCCAACAAACCTCAAACCTTTAAAATTATCCTTCAAAACAGTctgttgcttttattttttaccagtCAACACCCTTTAACTGAGAATTTCCCAACAACTATATTTAACATGTGTTGGCGTGTAATTTTACCATGAACTGATATGAAAACAAAATCATCGTTCATCTTTTTCTCCCTTGTGAATATTGTATGAACCATTGCAGACGATGACTGTAGAAACACATTGTAGACACCCCATGACACATTTGCTTCACAGATTAACATTACTCTATTACTTACTAATAATGTACAGAGAAATTAATGCTGTTTGTAACATTTAGAgaacaaaataacaataaacagtATCCGCTGATGGGCTTTCAAGGTAAAGGAATCTTTGGAAATGTTCATTTTAaggtttgtgtttctgttttatttgcctgaagAAGGCCAATTCTGTGAAACTCACTTAACCAAAAACATGGCGATTTGTATCATAAGTTCCTGGAATGCAAATACTTTGTGGGTTTTTATGTGTACAATAGctgtatataaaaataaaggtgTCCTCAAGTTGCCACTGTTA

Function

GO: NA

KEGG:

id description
K04852 CACNA1E, CAV2.3; voltage-dependent calcium channel R type alpha-1E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157416 lncRNA upstream 82899 21834466 ~ 21838752 (+) True G116794
TU157417 lncRNA upstream 85304 21834466 ~ 21836347 (+) False G116794
TU157363 lncRNA upstream 259181 21614100 ~ 21662470 (+) True G116746
TU157330 lncRNA upstream 421257 21454330 ~ 21500394 (+) True G116723
TU157251 lncRNA upstream 595388 21270751 ~ 21326263 (+) True G116657
XR_005640669.1 lncRNA downstream 43067 22025113 ~ 22036950 (+) False LOC120568180
XR_005640667.1 lncRNA downstream 43067 22025113 ~ 22035741 (+) True LOC120568180
XR_005640668.1 lncRNA downstream 43067 22025113 ~ 22035741 (+) False LOC120568180
TU157612 lncRNA downstream 252773 22234819 ~ 22236599 (+) True LOC120568856
XR_005640796.1 lncRNA downstream 253866 22235912 ~ 22238505 (+) False LOC120568856
XM_039815812.1 mRNA upstream 4754 21899568 ~ 21916897 (+) False klhl14
XM_039815810.1 mRNA upstream 4754 21899577 ~ 21916897 (+) False klhl14
XM_039815811.1 mRNA upstream 4754 21900721 ~ 21916897 (+) True klhl14
XM_039815808.1 mRNA upstream 4754 21901438 ~ 21916897 (+) False klhl14
XM_039815806.1 mRNA upstream 24468 21870953 ~ 21897183 (+) False LOC120568354
XM_039815505.1 mRNA downstream 968 21983014 ~ 21987482 (+) True LOC120568173
XM_039815509.1 mRNA downstream 13554 21995600 ~ 22002864 (+) False LOC120568175
XM_039815507.1 mRNA downstream 13559 21995605 ~ 22002864 (+) False LOC120568175
XM_039815508.1 mRNA downstream 13560 21995606 ~ 22002864 (+) False LOC120568175
XM_039815510.1 mRNA downstream 15807 21997853 ~ 22002864 (+) True LOC120568175
XR_005640709.1 other upstream 24260 21870953 ~ 21897391 (+) False LOC120568354
TU157037 other upstream 1006363 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 1546018 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 2404706 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 2902925 19017058 ~ 19018726 (+) False LOC120568770
TU157733 other downstream 626018 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 659464 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 1695033 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 1868833 23850879 ~ 23855157 (+) True G117319
unassigned_transcript_561 other downstream 1886208 23868254 ~ 23868325 (+) True trnaw-cca_13

Expression Profile