RNA id: XM_039815507.1


Basic Information

Item Value
RNA id XM_039815507.1
length 2047
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC120568175
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21995600 ~ 22002864 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGCATGCGCACTTCGTTTGGAAATTACAATATGGCGGCGACATGCTACGATCTGTTGACGTAACGAGAGTCAATCTAACATCTAACCCGCTAAAAACCTACGAGCCAGTTGTTTTAATAACCAGTGGATAACCGTAACTTTAATTAAAGTTTAGTGGTTAACGGTAGTGGTGTTGTGTGAACGGTTTTAGTCTGGAAAATGAATTACACCACGAAAGTGGTCCAGGTGACGAATGTGTCGCCAAGCACAACATCGGAGCAGATGAGAACACTGTTCGGTTTTTTGGGAACCATCGAAGAACTGAAGTTATTTCCACCAGATGATTCTCAGATGCCGGTGACATCACGGGTGTGCTTTGTGAAGTTCCAGGAGCCAGAGTCTGTTGGAGTGTCTCAACATCTGACAAACACCGTTTTTGTGGACAGAGCATTGATTGTGGTCCCATTTGCTGAAGGCTCTATTCCAGATGAGGCTAAAGCTTTGTCACTGTTGGCGCCCGCAAACGCTGTTGCAGGAATGATGCCAGGAGGAGGACTTCTTCCAACGCCAAATCCCATGTCCAATCCTTATGCGATTCTATTCCAGATGGGAGGGAACCCGTTCGGTATTCCGAACATGGATGCAATGGCTGCGTTTGGATTCCCAGGACACAACATGAATCCCCAGgctgCTGATCAGCTGTTAAAGTTCATGACAGATCCAAAGATGAATCCTTTGGCTGCAGGCTTAAATATGAGTGCGAGCCTGAAGGCTGACGCATCTAATCGAGAAATCGAAGAGGCCATGAAGAGAGTCAGAGAGGCCCAGTCGCTCATTTCTGCTGCAATTGAACCTGGAAATAAGGAGAGCAAAAAGAAGCGCTCTCGGACAAGGTCCAGGTCCAGGAAGAGGAAATCCAGATCACGTTCAAGACACAGGCGAACCAGAAGCAGATCAAGGCGACCGTCAAACTCCAGAAGCAGGAGGCGCTCCAAAAGCCCTCGCAGCAGGAGACACACCGACGGCAAAGACCAAATCAGGCTATCTCCAAGCAGATCCAGAGATAGAAAGAAAGACGATTCAGGGAGAAGAAGATCCAAAACACCTCCTAAAAGCTACAGCACAGCCAGGAGGTCCCGCAGTGAAGACCGGAGACGCCGGAGAAGTCGAAGCCCCAGCCGATCTCCTCCTAAGAAGTCTCCTAAAAAGAGGACTCCATCTCCTCGAAGacacaagaaagaaaagaaaagggataAGGAAAGGGACAGAGACCGGAAGAGCGATAAAGATCACAGTCGCGAGGAACGTGAACGCTCCACcagcaagaaaaagaaaagtaaagacAAGGAACGGGAACGGGAACGGGAGCGGAAATCGGACGGGGAGAAAGGAGATGTCAAGATCACCAGGGATTATGATGAGGAAGAACAAGGCTATGACAGCGCgaaagagagggaggacagGAAGGATTCTGACGACTCTGCTTTGTCTCCTCAGTCTGTAGAAGGCAACGGCACAGCGCGGCCTGTGAAGCAGGCCAAAGTTAATGGAGCTGACGATCACCATGAGGAGGACATGGATGTCAGCGATTGAGtagtctgtccctctgtctgtcatTATCCCTCTGTTTTGGTTGTGAACATGTTACGACTTTTTTCTGCACTGGGGTAAATCTAAAATGTGAAGTGAGCgtcaaatgtattgatttttCGCACAGAAGACTCAACTCTTTTTGCAAATGTACAATGCAGAATTGTCATTTTTTGCAGGGAGTTTGCCCGATGACATTGTCACATTGCTTTAAAGTACCCGTATGCTTTTTGCCTCTAAAAACAGTCGGTTAAAACTGGAAGTAGGCTTACTTTGCTTTTCTTGAGCTTGTGTTGTCAGgttttgtcatattttttttcaaatattgtatcttttacatttttgtttagtGTTGTGTGTTCTTAAGGCCTCTTCCCCAATCTTCTCGAAACGGTTAATACATTTGTTTCTTGTTATTTGAAAGTGTTGTTTTATCAAGGATTTCTTTTATAATAAAGCCTATTTGGAGAACCCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157416 lncRNA upstream 156853 21834466 ~ 21838752 (+) True G116794
TU157417 lncRNA upstream 159258 21834466 ~ 21836347 (+) False G116794
TU157363 lncRNA upstream 333135 21614100 ~ 21662470 (+) True G116746
TU157330 lncRNA upstream 495211 21454330 ~ 21500394 (+) True G116723
TU157251 lncRNA upstream 669342 21270751 ~ 21326263 (+) True G116657
XR_005640669.1 lncRNA downstream 22249 22025113 ~ 22036950 (+) False LOC120568180
XR_005640667.1 lncRNA downstream 22249 22025113 ~ 22035741 (+) True LOC120568180
XR_005640668.1 lncRNA downstream 22249 22025113 ~ 22035741 (+) False LOC120568180
TU157612 lncRNA downstream 231955 22234819 ~ 22236599 (+) True LOC120568856
XR_005640796.1 lncRNA downstream 233048 22235912 ~ 22238505 (+) False LOC120568856
XM_039815505.1 mRNA upstream 8123 21983014 ~ 21987482 (+) True LOC120568173
XM_039815503.1 mRNA upstream 13559 21921651 ~ 21982046 (+) True cacna1eb
XM_039815504.1 mRNA upstream 14833 21921651 ~ 21980772 (+) False cacna1eb
XM_039815811.1 mRNA upstream 78708 21900721 ~ 21916897 (+) True klhl14
XM_039815514.1 mRNA downstream 13058 22015922 ~ 22017307 (+) True znf830
XM_039815821.1 mRNA downstream 63150 22066014 ~ 22149833 (+) False LOC120568357
XM_039815823.1 mRNA downstream 63150 22066014 ~ 22149833 (+) False LOC120568357
XM_039815822.1 mRNA downstream 63150 22066014 ~ 22149736 (+) False LOC120568357
XM_039815813.1 mRNA downstream 63152 22066016 ~ 22151613 (+) True LOC120568357
XR_005640709.1 other upstream 98214 21870953 ~ 21897391 (+) False LOC120568354
TU157037 other upstream 1080317 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 1619972 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 2478660 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 2976879 19017058 ~ 19018726 (+) False LOC120568770
TU157733 other downstream 605200 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 638646 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 1674215 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 1848015 23850879 ~ 23855157 (+) True G117319
unassigned_transcript_561 other downstream 1865390 23868254 ~ 23868325 (+) True trnaw-cca_13

Expression Profile