RNA id: XM_039815513.1


Basic Information

Item Value
RNA id XM_039815513.1
length 3099
RNA type mRNA
GC content 0.42
exon number 9
gene id efcab14
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 22017305 ~ 22025067 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCCAAACAATACAGACAGATCGCTGGAAATATACAGTGCCGCATATTTAGATTTTACGATAGACAGGTTTTATTTATCTACTTAAAGACATTTTGTAGTGTTTCCAAAATGAGCGATGTCGAGGCACGTATTTTGAAAACTCGCTGAGACGATGtgatagctagctagcacagTAACAATATCCAgcctgttagctagctagctaccgttaGCAAGGTGTCAGATGCTAGCCGAGTCAGCTAACGTAGCTATGTGACCCGGCAGCTAGTCGAAGTTGTTTTGGAGAAGCTTTTTTGGGAAATTGAAGTAATGCCGATCAGCTGTTGAACATTTGTTTGTATTCGTTGTAAATCAACAAGGAAACCAACAGGCAAAACCCGATGTGTTTATATCCGTTAGCAACGTTGCGTGGTTGAAATTAAAGCTAGCAATTGAatagttagctagcttagctGCTACATAAACGACAACATCCATCAAACTGGACAAAACTTTGGATTTAGtcgggtttaaatcgggctcggCGGGTTCGCTGACCCctcagaagaagatgaagaagaggaaggagctGAATGCCTTGATCGGACTCGGGGACAGCAAAAGAAAGAAGACCAAAAAGGGGTCCGGTCACCGACTTCTCCGAACCGAGCCGCCGGATTCGGAGTCCGACTCCAGCTCGGACGATGACGAGTTCAACAACCTGAGCAGCGGAGCTAGCTTTGGAAAAAGAAGCTACTCGCAGTGCTGCAATGTGTGCTACCCCTTGTTTCTGTTTATCATACTTGCTGCCTGCGTTATGGCCTGTGCTGGACTCATATGGATGCAGATTGCTCTGAAAGAAGATCTAGACTCACTGAAAGAAAAGCTGCACAGCATGGAATCCAGCCAGAAGGTCTCATCAAGTGAAATACCAAAACTTAGTGAGGACCTGAAAAACAAGGAGAGAAAGCTTGATGATCTTGAAAACGGGGACAAGGGGTTGAGCAAGCTCTGGTCTAACCTAACAGAAATGAACAGAAAGATCAGTTTGCTGGACTCTGCGGTAAACCATTTAAAGACCAACTTAAAATCAGCTGCTGACTTAATCAGCCTTCCCACTACAGTTGAAGAGCTTCAAAAGAGTGTCGCTACAATTGGCAGTACACTAACAAGTGTACAGCACGACGTGAAGACTATGCAGGCTGCTCTGGAAAATCAGAAGAAAGATGATGAGTTGAAGAAGACATTGGACATAACCGACCTGAGAAAAGCAGTGAGTGAGGCTAACAAGACAGAGGAGCTGCACCTTACACAGACTGATGAGCAGATCCACATCCTCCTCTCTACGGTTACAGATCTTCAGCAGAGAGTGGCGTCATTAGAGAACGGGTCAAAGCAAAGCCCAAAGGACAATAACGCAGCAGCAATCACTAGTGAAAGTCCAGCGACTGTGACGGTGAGCGAAGCTACTACAACCAAAGCAACACCTGGGGATGTGCACGaggTATCCACACCACTGACAGAGCCTCAGACTAGCAGACGCCCACGCTTCTTAAATCCAAACCGCTCTAAGAGAAATGCTGAGACAACTTGCCCAAAGAGGGTGTTCCTGCCTGGTGTCAGTTCTCTAAAAGACTTGGAAGACATCTTTCAGCAAGCAGGCATTGGACGTAATTTACTCGGGTTGACCTACCGCGGCATGAGGAAAGAATTTGGAACATCGATTCCCAATGTTCGTACCATGGAGTGTTTTGACAATGATGGAGACCAGAGGTACTCCCTGATGGAGCTGAGAGCTGCTGTAGGTTTGTGAGCACATTATCACTGACAGCAGTGTTGAATACCCAGCAGGGTCTGGGGGTTCGAAGTTCTGGACCCTTTTCTGTAATTGCTGCACTTTTGTGAACTGAATATTTATCATACCGATTGTGGAACAGTGGCGCTGGCATGCCCCATACTTACTCCCTCTCCCCGGTCTATTCCAACACTTCCTCGTCCACAAAACATACGCTTACATTTTAAACTTAATCTATAGGAGTACCTGTATGCGGAATAATCGGCTCTTATTTTAGCAACTTCCATGATTTATATGAAATAAACGGTGAAAAAAGTGTTATTTTGAATCCCATTTTCCATCTTTAATTCTGACTTGCTGTTTTCAAGCACCTGTTTTTTGGTTAGTCTGTCTATTTAGCTTCTCTGTAGGCTGTATTTGTCAGTGTACTTCCTCGCCCATCAACAAAAACACCTGATGAAACTCCCCTGAACCTTATTTATAGAGCCTGAGATAGAATTTTAGGAATGTTTACAAATTACTACTAGAAACTGTTTTTGTGAgtcttctgttttgttttgagaCCGATTCCTAACTAACTGAAACACACAATTGAGCATACGAGTGAGAAGTGATCTCTAAGCTCAACAAGGTTTCAGATTCCTttctgctctgttttttttcctttattttcacttAGTTGCTACATTTTGATTGACGTGTTTAGTCAATCTGTACATTTTTGCAGCTTTCAGTTCTACAAGTTTTGAAGGGCTATGAACactttgaatcatttacaaataGTTTTGAAGTGGTAACTCATGAGGCATATGTAGCAATAACAAAATGACAGATATTGCTTGTTTAAAATTGAAGTAGACAGAAGGCACACCTAGCTCACAATGTGTAACAGGTAGTATAAGAAGCACTGACCATCACTCTTTACTTGATTCATTTTATTCCATTTTGAATGGGACTAATAATGGTGTATTTACATAGCAAAATTTGTCATACTCAAACATTGTTATACTCTGTAAAAATGGTTTAAATGCATTCTCACAAATTATCTTGTGAAGGGGGTTGGGTTTGGTTAAATTTGCTTTTATGGTCTTAATCTCAACATTGAACATTTCTTAAATAATTatgttgtgctttgcatgttgCTTATAATGTAACATGAACAAATTATTTATGAACTTAACATAGTCGACTAGTTGTTTTTGGAGGACAATGTAACCGCTTTGGCCATCATGAAAGATTTTGGGTCCATGCTGCTGCTGTACATGGAGATTTTatgaatgtttttgtgtgaGCACCAATGAATAAACACAAAGTTAAAATGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157550 lncRNA downstream 14447 21997794 ~ 22002858 (-) True G116893
TU157461 lncRNA downstream 206159 21810862 ~ 21811146 (-) True G116832
TU157375 lncRNA downstream 356838 21658679 ~ 21660467 (-) True G116758
TU157354 lncRNA downstream 421999 21592739 ~ 21595306 (-) True G116743
TU157296 lncRNA downstream 717223 21297415 ~ 21300082 (-) True G116692
TU157587 lncRNA upstream 153226 22178293 ~ 22178534 (-) True G116922
XR_005640797.1 lncRNA upstream 156897 22181964 ~ 22205991 (-) True LOC120568857
TU157630 lncRNA upstream 170257 22195324 ~ 22200980 (-) True G116954
TU157760 lncRNA upstream 604829 22629896 ~ 22632268 (-) True G117052
TU157764 lncRNA upstream 645666 22670733 ~ 22674450 (-) True G117055
XM_039815512.1 mRNA downstream 1459 22004839 ~ 22015846 (-) True LOC120568177
XM_039815506.1 mRNA downstream 23132 21988812 ~ 21994173 (-) True rpe65a
XM_039815803.1 mRNA downstream 149357 21848903 ~ 21867948 (-) False dtna
XM_039816579.1 mRNA upstream 185520 22210587 ~ 22220681 (-) False LOC120568852
XM_039816580.1 mRNA upstream 185755 22210822 ~ 22220682 (-) False LOC120568852
XM_039816578.1 mRNA upstream 185755 22210822 ~ 22220681 (-) False LOC120568852
XM_039816577.1 mRNA upstream 186870 22211937 ~ 22220680 (-) False LOC120568852
XM_039816576.1 mRNA upstream 186870 22211937 ~ 22220679 (-) True LOC120568852
TU157096 other downstream 1006736 21008049 ~ 21010569 (-) False higd1a
TU156767 other downstream 2221596 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 2551925 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 2794579 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 3081828 18931974 ~ 18935477 (-) True LOC120568972
TU157655 other upstream 236931 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 238056 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 1405299 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 1443553 23468620 ~ 23491612 (-) False LOC120568062
unassigned_transcript_560 other upstream 1842885 23867952 ~ 23868025 (-) True trnai-aau_23

Expression Profile