RNA id: XM_039815560.1


Basic Information

Item Value
RNA id XM_039815560.1
length 2523
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC120568200
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24253388 ~ 24257335 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCCTGACAACAAACCGTGCGTACCTATCCGTAAAATCCCGCCCATTCAGTCGCCACCACACTACTGTAGCAATCTATGTGTAGCAAcaacggttagctaaattagctTAGCGCTGTTGTTGAGGTTGGAAGATAATAGTTAAAAGTTAATCCGTCCGTATTCTTTATGAGCATTACAAAACGCGGTCTGACAACGGTAACAGAGCTGTAACGTTAGGGGTAGAACTTAAATCCAGGATGTGCTCCGTTGTCGGATGTGATTCGGGGCGTCGCAGTGCGCAACGGTTTAAGTTACCGGAGGACCCAGAGAGGAGACTGGAGTGGGTTCAGTTTCTCGCTACAGTCAACATGCAGCGGTTTAAAGAAGCGTCCTGGACAGACATTAGAATTTGTAGCGAACACTTTAAAGGCGACTGTTTTAACAACATGTCACCGAGCCATTCAGGTTTTACTGACAAGgaccagctaacgttaaatcCCAATGCTGTCCCATCACTGTGTCTCAAGTCCGAGTCAGAGGAACCTGAGACACATCTGCAGAGCCCAACATGTGTGGAGCCTGAGGAAACCACAGAAGTTGCTTATCAGCATGATCAACTTAAAACATGTGATGGCCCAACTTCCTTTCCTGAAGAATCAAGACTGACTTCAACggCTTCTGAAGGAAGCCCAGTCCCAAGAGGTGTCTCATCCTCAACTGATTCCTCAGATGGTTTTTTTATATCCATATATCGTCAGCTGCAACCAACAAATACGAATTTGGATTTGATGAAAGAAAAAGCATCACTTCTGCAGACGAAAGGGAAGTATGTCGTTAATGAAAAACGCCTCCTCCAGTTGTTCAGCCACAAGTGCCCGTCATGTGGTTCTAAAGTAAAGATGGAGAAGGTCACCCATGGGGTGCTCATCATCTTGAACCAACAGTGCCTTCAGTGTGACTACAGAAACCAATGGAAAAGCCAAGTCACTACCAGTGTCCCAACAGCTGAAGACCAATGCCTGACAGAAGTAGTAGAAGTAGACCTAACTCCAGAGACCCAACAGGCAGTGTCAACAGATGACAACCCCAGCACTATCGCAGGAGTCCCTGAGATTGTTGCTGTTATTGATGACAAAAGTGATGCCATGGCTGAATCAGGGGAATCGAGTAATCAGGGTGACATGGATTCAGACGAGGATTGGAAGCCAAAGAATTTGGTGCTGGCTAAAATGCTCAAAAATACCCATGATGACAAAACTAAAGAGAAAGAAGATTATGCTTTTCCTCCACTTGTCCCCAAACAAGGTCAGCTCTGCACAGAGTGTGGAAAGTTTTTTAATAAACAGAGGCCTCACACATGTGAGCACAAAATTAAACCCTATTCTTGCAATATTTGTGGTAAGAGATGTGTTAGCAAGTTCACGCTAAATACTCACAGCAGAATCCACAGTGAAAACTATGAGCATCGGTGCAAATACTGCCACGTTACATTCAAAACAAAGGTGGACAAGATCAGTCACGAGCAGATCCACCTAACTGAAGGAAAGCCCTATAAATGTCCCGAATGTTCAGAGACATTTGCCAAAAATAAGGAACGCAGAATCCACCTGGAGGATCACAGAGGCCCCCCACAGTTGAAGTGTTACTTCTGTGGGATTGAATTCCTCTGGCCACTTAATCTCCAGAGACACTTGGCGGtgcacacaggagagaagccgttCAAGTGTTCAGTGTGCCAACGTGGCTTCAGCCAGCCAAGCCACCTGAAATCCCACATGCGTCTGCACACAGGGGAGAGGCCTTTTAAATGTCAGCACTGTGACAAAAGCTTCAATCACAACGTGAGCTTGAAGAGTCACGTCCAGCGTTACCACCCATCGAGCTCTGAACGTGAACAGAATATAGAAAAGATAAACGAAAGGGCAAGTGACGCTGGCGATGTTCAGGATAATGGAAGTAACGGAGGTGCAGTATCAGGACTTGACAATGTAGAGGAAGAAGGCGACacggaagaggaggagggaatatatagacctaaaaaaaaaaggaaaagcacaggtagGCCCATAGGAAGGCCTAAGAGCTATGAATCGCGCAACCTCGTAGAAGGCAAGTGTTCAAACACCAAGACTGGAAATCTACAAGAATGCAGCGATGAAGAAAGTCAGTTAGAGCCGAGGTACCGTGACGCATCCTTTGATCCagcagaagaggaagaggagagcagCAAGAAGGCGATAAAGGCCGCCGCGAGATCGAGGGGAAGAGCGAAACATCCTGATAGTGACTCCGATTTTGAtcctgaagaaaaaaagacaaagaggtACAGCAGCCAGAGCAGTGGTAACAGCTCTGGGAAGCGTAGGGGAAGACCAAGGAAAAATCTTAAAGAATAGGGTTAAAATGAACAGAGCTAAGGAATTAATTTGGTCTATGCCAGGGTTTGGCTGTatactcaattctgattggcttcAGGTTGtccattaacccttgtgttgttcttcgggtcccagtgacccgaaggacaacacaagggttatgta

Function

GO: NA

KEGG:

id description
ko03022 Basal transcription factors
ko03030 DNA replication
ko03420 Nucleotide excision repair

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158350 lncRNA upstream 83435 24169668 ~ 24169953 (+) True G117488
TU158349 lncRNA upstream 83833 24164854 ~ 24169555 (+) True G117487
TU158338 lncRNA upstream 102617 24150458 ~ 24150771 (+) True G117476
TU158223 lncRNA upstream 178073 24073887 ~ 24075315 (+) True G117389
TU158250 lncRNA upstream 208904 24043969 ~ 24044484 (+) True G117406
TU158403 lncRNA downstream 219 24257554 ~ 24258831 (+) True G117523
XR_005640665.1 lncRNA downstream 80358 24337693 ~ 24339256 (+) True LOC120568139
TU158431 lncRNA downstream 299084 24556419 ~ 24556657 (+) True G117547
TU158430 lncRNA downstream 312243 24569578 ~ 24576002 (+) False LOC120568789
TU158539 lncRNA downstream 580621 24837956 ~ 24838229 (+) True G117632
XM_039816401.1 mRNA upstream 5768 24240706 ~ 24247620 (+) True amotl2b
XM_039817019.1 mRNA upstream 29790 24220237 ~ 24223598 (+) False aire
XM_039815561.1 mRNA downstream 2128 24259463 ~ 24267286 (+) True LOC120568201
XM_039815562.1 mRNA downstream 12349 24269684 ~ 24278078 (+) True LOC120568202
XM_039815425.1 mRNA downstream 116954 24374289 ~ 24545760 (+) True tnr
XM_039815423.1 mRNA downstream 119557 24376892 ~ 24545760 (+) False tnr
XM_039815428.1 mRNA downstream 119557 24376892 ~ 24545760 (+) False tnr
XR_005640839.1 other upstream 198684 24049764 ~ 24054704 (+) False LOC120569114
XR_005640838.1 other upstream 198684 24049764 ~ 24054704 (+) False LOC120569114
TU158239 other upstream 229729 24022441 ~ 24023659 (+) True G117400
TU158169 other upstream 338890 23912664 ~ 23914498 (+) True hes6
TU158168 other upstream 344987 23905870 ~ 23908401 (+) True G117353
TU158470 other downstream 410558 24667893 ~ 24675753 (+) False LOC120569045
TU158471 other downstream 416589 24673924 ~ 24675753 (+) False LOC120569045
TU158583 other downstream 693233 24950568 ~ 24954247 (+) True G117664
TU158802 other downstream 1497758 25755093 ~ 25755890 (+) False LOC120568894
TU158814 other downstream 1518556 25775891 ~ 25793954 (+) False LOC120568895

Expression Profile