RNA id: XM_039815566.1


Basic Information

Item Value
RNA id XM_039815566.1
length 4004
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC120568207
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 28593338 ~ 28613393 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGCTCTGCCTCCTTCCCTCTCGCTGCAGCGATGAAAGCAGAGGAGATAACGGAGACAAACCCGTGGATGTGTCATAAAACCGTTTGTTAGAGACCTGAGATATTATTCTGCCAGTAGTTAACCTGGTGAACTCGCACCTCGCCGGTGGTTTAGTCGAAGATAAGAAGCTATCTCTGTGAGAGGGGAACCTTTAGCAAGCTGAGAGCGACAGAGGGGGGTTTGTCGGCCCACTGCAGTCTGAATCACCGCAGACTCGCCCCACCACTGGTTCATCATCGACGACGACGTTTGCCCATCTACGTGCGCATCCTCTCGGAGGCACAAAGCAACGGGAAGGGACGAGACCCAAACCCGTGTTTGACCCACTGCCGCAGCCCCGAGGTGCGCTGCTTGGCAGGGCGTGCTAAATAATGAGCCAAAGGGACACACTGGTTCATTTGTTCGCTGGAGGATGTGGTGGCACAGTGGGTGCAATTTTGACTTGTCCTCTGGAGGTTGTGAAGACTAGATTGCAGTCCTCTTCCATCACTCTCTACATCTCTGAAGTCCAGCTCAGCACCGTCAATGGAGCCAGTGTGGCCCGTGTCGCTCCACCAGGGCCTCTGCACTGTCTCAAGTTAattatagagagagagggacccCGTTCACTCTTCAGAGGACTGGGACCCAACCTAGTGGGTGTGGCACCTTCCAGGGCGATCTACTTTGCGGCATATTCAACAGCCAAAGAGAAGCTGAATGGGGTGCTGGAGCCAGACTCTACCCAGGTGCACATGGTGTCGGCTGGGCTTGCAGGGTTCACCGCCATCACAGCCACCAATCCCATCTGGCTGATCAAGACCCGTCTGCAGCTGGAAACCAGAACCCGGGGTGAGCGGCGAATGAACGCATTTGATTGCGTGCGGCGGGTGTACCAGATGGATGGCCTGCGAGGTTTCTACAGGGGCATGTCCGCCTCGTACGCCGGCATCTCTGAGACTGTTATCCACTTTGTCATCTATGAGAGCATCAAGCGTAAACTGATGGAGTCCAAGGCCCACGCCAGCATGGACGAAGAGGAAGAGTCTGTCAAAGATGCCTCTGACTTTGTCGGCATGATGCTCGCAGCAGCCACCTCTAAGACCTGTGCCACCTCCATCGCCTACCCTCATGAGGTGATCCGCACACGGCTACGAGAAGAAGGCAGCAAGTATCGCTCCTTCTTCCGAACTCTGCTGACGGTGCCCCGGGAGGAGGGATACCGGGCGCTGTACCGCGGCCTGACCACCCACCTCGTCAGACAGATACCCAACACCGCCATCATGATGTGCACCTATGAAGTGGTGGTCTACCTGCTTGGCCGTTAGCACGCCAGAGTTTGGTCTCCTTCTTGTTCAAAGAGGGAGACGGTTGGCAAAAGACTGAGAAGGAAGCCCTTTGGCAAGAGAGAGTgaggacaaaaatgtcaaaatgaagaCCAAAGGAAAACCGAAAATACTCTAGTGGACCAGAAGAGGACAAATGGACAAAAGATGAAGAGAACGGAGGGAGGAAAGCCCTTTGTTATCATATCAGCATCATCACCTCCAGTTCCCTTTTATCAGATTGCTGGAACAGATAGATGGCGCCGCTACAGTGCACAGAAGAGGTAATATGGGTAGGAGGCACTGACaggaaaaacacagaaagagTTTGACACCTGTTAAACTAAGGGTACCTCTAACAGGAAAGGATTTCAAGCACAATTCAGTGGCCTTAACAGAAAAGGTTTTAGTTTGCGTCCTTCCCTTTTGAGTGAGGAGTgaaaaacagcctttttcacTCTCAGATAGTGATGATATTGTAAAAGGGGAATGCTTGGAGGCAACTGAATTTGACAGGAGATATGATAACTAAATGTATGTCAATTTCACTCTACTTGGCTCTATTTGTCTGCACTGTCGCTTCAGTGCTGTGAGACTACAGTAGCATTAGATGAATGGCATTTGAGGAATGTTCATTTAAAGCAGAATGTCCGAAGAAAGCTTGCATTTGAAACAAAGACATCGGTCTGTTTTTAAGTCACCTGAACCACTCATCTTTGCACTACAGAAAGTGTGGCTTCAAGCATTCCCCTCTGACCACTGCACCCCCCGATGATGGCCTGAAGTTCATCAACAGCAGTGAGCTAACTGGCCACACACAAGGAAAGAAATGATGAGCTTGTGACGGCCTGTCACTCAAAATTGAAAGAGTAGGTTTAAAAAGCTGACATTCAGTGTTTTATTCCTCTATAACTCAGTGCCTGGTGGTGACCCGCTTCGGGTGAAGTTGGCCTTCTGTGTCGACAGTTTCTACTTGGTTGAAACTAAAATAAGACTGGCATACAAGGCCAGCTTCTGCCCGCACCCAGGCACTGCTTAGGACTTTAAAAATCTTGTGTGAAAACATGAGACCAACGTGTCCTTTTTGAGATGTGAAGTGTGCGATTGTCCAAAAGGTACCAAGGTACATTATCTTGAATATAATGTGACGGTGTGGGGAGAATGTTGATGGAGTTTCATCATCACcttgtgagtgagtgagtgagtgaatgaatgaatgaatgaatctgCGGTCATGTGTGCCTGCAAGTATAATTAAAGCACCTACTCCAGCTTTCCCTCCACTAACTATTAATCTTGCGAGACACTGGGGTTGGGAGTGTGGAAAAGCTCCTGTACGATACTGGCAGCTTTCATTCCCACTCTCATGCCAGTCCTACCTTCCAGTGGCTTCCAACTGATCTGATAACATGCACTTTTGTGGCCTCTTAGGGCTTGtgcttttcattttattgtgtGGACAGTTTGAACTTGTACAttgtaaaagacaaaaaaagtattACTGTATATCAAAATGGTATTTTGCGCAACTGTTCTCATAGCAGATATATTGTACAGTTTAGAGTTCTCAGTAGTTGTGAAGGATGTCCAGATGCGTGTATATaatatagatactgtatatgcatatcATTTATGGTTTTGTTCTTAGGCCCATGTTTGTTCATGCTGTAGTTTGCATTTGCAatttattgttttcctttttgtgcAATTTAACTTTGTTTGACATTGACTGTTGACATGAATATTGATATTGCTCGAATTATTTTGTCTTGCAGTATAATCTGTgggtttatttgtatttgtatgttgctGTAAGCTGTCATGCAAATGTGTGCTAAGTCATTttacctaaaaaaacaaaaaagtgtcaCATTTTGCAGAGTTTGGATGTTTCCGTTATTGATAATGTTTACATCCTTCATTACTTTCTGTCAGATTTTAAGTTTTCCTAGCAACAAGTTTTGAATATCAAAACAGAAGTATATTTACGTACGAGTTCAACAACTGGAATCCTCATTCTGCAACAGTCGGGGCGGTTAAAAACTGAATATGAGAGTTTCAGAAATTGCCAAGCTAATCTGTTACTGAAGAGGGTTGTTCAATAACCCCTTTTTGAACAACCATTTTAAAATCTTCATATAGCATACATAAAGAATTATCTTTTGGACATATTTggcacacaattttttttttttttatcaaattgtCCCTAACatatttttatgttgtttataacgaaaacattctttttaaatgacatttaaaacTTTTCTGCGCAGAGAAAAGCCGTCCCTCCACAATGTCTCTTAATCAGCCGCTGTGGTCTCAGTGCACACTCTTTCTCCATATGGAAAAGATTACGTCTACGCAGTttccatgtttaaaaaaaaaaaaaaaaagtctgatgcGTTGACTGCGTTCACGCAAGATGTTCTTGAACGCTCTcattcccccccaccccacccctcctTGTTGCAGGGTCATTTCAGAGGCCTGTGTTTGAACTTGTATAGTTATTGATTTTCAGTCTCTATTGACATGTTGCTAGCCAAAGCTGCTGTCGGTGCTTGAAAAAAATGTGCTGactcattttaaatgttttcctgtGAAACACTAATAGCTTTTATGTCTTTGGATCCATTGCAGTAATATTTGAGGT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15116 SLC25A33_36, RIM2; solute carrier family 25, member 33/36

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159959 lncRNA downstream 111441 28481639 ~ 28481897 (-) True G118671
TU159956 lncRNA downstream 119718 28470967 ~ 28473620 (-) True G118668
TU159916 lncRNA downstream 387097 28205711 ~ 28206241 (-) True G118636
TU159912 lncRNA downstream 392787 28200137 ~ 28200551 (-) True G118632
TU159884 lncRNA downstream 445081 28146370 ~ 28148257 (-) False metap1d
TU159970 lncRNA upstream 43268 28656661 ~ 28657022 (-) True G118678
XR_005640662.1 lncRNA upstream 84701 28698094 ~ 28699197 (-) True LOC120568122
TU159990 lncRNA upstream 129567 28742960 ~ 28743235 (-) True G118698
TU159992 lncRNA upstream 142194 28755587 ~ 28755883 (-) True G118700
XR_005640660.1 lncRNA upstream 182685 28796078 ~ 28802749 (-) True LOC120568120
XM_039816396.1 mRNA downstream 3194 28498947 ~ 28590144 (-) False LOC120568715
XM_039816397.1 mRNA downstream 21857 28498947 ~ 28571481 (-) False LOC120568715
XM_039816395.1 mRNA downstream 42978 28498947 ~ 28550360 (-) False LOC120568715
XM_039816399.1 mRNA downstream 42978 28498947 ~ 28550360 (-) True LOC120568715
XM_039814645.1 mRNA downstream 322682 28250633 ~ 28270656 (-) True LOC120567676
XM_039814646.1 mRNA upstream 23659 28637052 ~ 28647533 (-) True LOC120567677
XM_039814984.1 mRNA upstream 46439 28659832 ~ 28661149 (-) True LOC120567913
XM_039815383.1 mRNA upstream 261482 28874875 ~ 28876602 (-) True LOC120568118
XM_039816556.1 mRNA upstream 487617 29101010 ~ 29103793 (-) True LOC120568834
XM_039816391.1 mRNA upstream 673883 29287276 ~ 29292640 (-) True LOC120568712
TU159738 other downstream 874579 27717551 ~ 27718759 (-) True G118524
TU159739 other downstream 878948 27713467 ~ 27714390 (-) False G118524
TU159721 other downstream 917978 27670976 ~ 27675360 (-) False LOC120568986
XR_005640672.1 other downstream 1768768 26819838 ~ 26824570 (-) False cirbpa
TU159298 other downstream 1927386 26661621 ~ 26665952 (-) True G118175
TU160079 other upstream 372698 28986091 ~ 28986319 (-) True G118764
TU160179 other upstream 806986 29420379 ~ 29420652 (-) True G118856
TU160248 other upstream 1030970 29644363 ~ 29649792 (-) False LOC120567741
TU160542 other upstream 2250853 30864246 ~ 30865494 (-) False LOC120568929
TU160545 other upstream 2250853 30864246 ~ 30876080 (-) True LOC120568929

Expression Profile