RNA id: XM_039815568.1


Basic Information

Item Value
RNA id XM_039815568.1
length 640
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC120568209
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 36844011 ~ 36844650 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATGTAACAGTGCAGATCAGAAACTCCAAAGACTCTGAGACTCTGACGCCAACATGCTCTCGTTCCTCTACTTGTTTGGTCTGACTCTGGGGGCTGTGTCTCCTTCAGACGGCTATCCGGTGGAGCTACAGCGTGGCAGCTGTCCCATGTTCTGGTTCAGTTTCAACGGCCGCTGCTACAAGTACGTCGCTACACATTTGACCTGGGCTGATGCAGAGCTCCACTGTGTGTCACAGGGAGGCAACCTGGTGTCCATCCACAGTCTGGAAGAAGAGAATTTCATCAAATCCCTGATCAGGAATTTTGACCATGCTCAGGGAGCGACCTGGATTGGACTCAGCGACACCCAGAAAGAAGGTAGTTGGATGTGGTCTGATGGTTGCAAAGTGGACTATGTCTATTGGAATAGGGGAGAGCCAAATAACGCAGGAGGACTTGAACACTGTGTTCACAACAACTATGATAAAGATTTCAAATGGAATGACGTGCCATGTTCTGGTACTATTCCCTCTGTTTGTGCATCTCGTATTACCTGTCCTTAGCAGTTGAGATGTAACATGGTTGAACCCTGGTCACTGTTCACCTGTTGCTCTGTTGACATGCATTAGGCCTCCAGAATAAAGACACAGATGTGCATTTA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162586 lncRNA upstream 24237 36819563 ~ 36819774 (+) True G120796
TU162483 lncRNA upstream 285279 36411744 ~ 36558732 (+) True G120720
TU162477 lncRNA upstream 439246 36404553 ~ 36404765 (+) True G120714
TU162439 lncRNA upstream 622241 36221419 ~ 36221770 (+) True G120678
XR_005640756.1 lncRNA upstream 637770 36204551 ~ 36206241 (+) True LOC120568724
TU162604 lncRNA downstream 19143 36863793 ~ 36865529 (+) False LOC120568212
XR_005640683.1 lncRNA downstream 19149 36863799 ~ 36866140 (+) True LOC120568212
XR_005640684.1 lncRNA downstream 26701 36871351 ~ 36875394 (+) True LOC120568213
TU162630 lncRNA downstream 115281 36959931 ~ 36971438 (+) False LOC120568208
TU162641 lncRNA downstream 244800 37089450 ~ 37090881 (+) True G120842
XM_039816078.1 mRNA upstream 96343 36737148 ~ 36747668 (+) True LOC120568506
XM_039816071.1 mRNA upstream 133199 36624079 ~ 36710812 (+) False LOC120568504
XM_039815569.1 mRNA downstream 10546 36855196 ~ 36855843 (+) True LOC120568211
XM_039815567.1 mRNA downstream 35268 36879918 ~ 37087443 (+) True LOC120568208
XM_039815045.1 mRNA downstream 364655 37209305 ~ 37230711 (+) True LOC120567940
XM_039814685.1 mRNA downstream 753164 37597814 ~ 37598425 (+) True LOC120567716
XM_039815841.1 mRNA downstream 1144915 37989565 ~ 38019068 (+) True LOC120568367
TU162480 other upstream 437322 36406121 ~ 36406689 (+) True G120717
TU162479 other upstream 438238 36405240 ~ 36405773 (+) True G120716
unassigned_transcript_581 other upstream 594484 36249445 ~ 36249527 (+) True trnal-caa_4
unassigned_transcript_580 other upstream 601407 36242522 ~ 36242604 (+) True trnal-uaa_9
unassigned_transcript_579 other upstream 601742 36242187 ~ 36242269 (+) True trnal-caa_3
TU162632 other downstream 166349 37010999 ~ 37018790 (+) False LOC120568208
TU162730 other downstream 458244 37302894 ~ 37306014 (+) True G120914
TU162816 other downstream 1167227 38011877 ~ 38019038 (+) False LOC120568367
unassigned_transcript_597 other downstream 1352391 38197041 ~ 38197122 (+) True trnas-cga_7
TU162901 other downstream 1911034 38755684 ~ 38755931 (+) True G121058

Expression Profile