RNA id: XM_039815581.1


Basic Information

Item Value
RNA id XM_039815581.1
length 2057
RNA type mRNA
GC content 0.43
exon number 3
gene id snorc
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23891144 ~ 23896911 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGATCCTGTTAAGAGCTGGAAATGCAAACCCAATGCATTTTCTCCACAGGAGAACTAACACTGACAGTTTTTCAGGAAGAAAAGCCCATCCTCTCACCACTCGGTTGTAGTACatattgacattaaattagtcaAGGTTTTTAAATCctcaaaaaggaaatgaaacCCGCCACTTCCTTCTGatgaaaagcaacatttttctaAACGCTCACAAAGATCGTCACCATACTGAagctaaaacctttttttaaaagccttcACGGCCAAAGGTGAGTTTTGGCCATCATTAACCTTAGTGAGTCCCCCCGACTTTTTtggaagtgcaatactaaattgTTTATTCATGCATCGGTAACAAAAATCCAGTGATAAAATGCAGTAAAAGTCCTTCTGTATAATGAGTTTACTTGCAACTTTACATGTTGCTGCTAATATTCCTTGTAGTTTCTAAATGTTGATACTTTTAGATCTCAATACGTCCTCCACTACTGCCatcttttgatttaaaaaaaaaaaaaagtaaatgtgttCAATAAATGTCCAGCAGAGACCTTTGTGATGTGACCTGGGCAAGGTCAGTGGCTACCGAATGTTTACCCCTTACGCCCAACTATGTGGCCGTAGGAGTTTGGAGTGGGTGGGCCCTGCGATGATGTGCTCACAAAGTCCACACTGTCCAGACAGTCCTGTGCACACCTAGTCCCACCCCTTCTCTCACCCCTCAGTTGCCTACCTCTCCCCCTGCTGCGCTCCCCTGTactcctctcctgctcctctcccaGGGTCAGCTACTTGTTTGAAGTTTGACGAGTTTTGGAGACGCATTTTGCTCTGTCTGACATCCCTCAGCCACCATGGTTCACAGCAGCAGTATCTGTAGAGTACTCCTCCTGGTGCTCCTCGGCTTCTTGGTAGCCTTTGTACACACAGAGACAGTCGCAGACTCGACAACAAGAGACAACCAGGACACCATGTCTGGAGAACCTCCCAGTGACGTCACCACCAAAGAGCCGTTCCAGGACATGACGGAGCAGTCCTTCACTTTTGACTATGAGTACACCACGCACACGGAGGCCATGGACAAGAATGAGGgagTGCTGGGGCCAGGGGCCATAACAGCCATTGTTATAGCAGTCTTTCTAGGAGCGTCTGTCCTCCTCGCACTCGTCGTCATCACACTAAGGAAGTTCACCGCCTCCTAGAGTGAATACATCCCatcttgtatgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtttgtatgtcagCGTTTCTCTTTTGCCTCTCATCTCAATCTCTTAACTCTTTCTTGCAAAAATGCGACTGACTATTTCCAGATTTCCTCCTGGAAGCTCACTCTAATTGTTGCTCAACATGTCCACTTGTTACTGAGGGTATAATGTTAGAAACTGGCTGGCTCTTCCAGTGGAAATCGTAGCATGTCCATGTCATTcactctgtttgttttttgaacTTGCATGCTCTAAAtggtttttaaatgtgtgtgggCCGTTTGTTTCCTGATGGGACGTGTCCTGCATGTGTTTGCTTTTATATTTGAAGAGGAAGTGTGTgcttttgtctttgtgtctttcacAATAATTTTAACTCATGTCTAAAATATTCCCTTGGTGTCACCCATGTACAATTTGTATTCCACCATTTACAAACATTTGTAGAGTGAAAATAAGGAGAAAACATTTTAGAAAGGCTTCTTCGATGAATGTAAACAGGGTAGTTGGGTTGTTTGTTTTGACCTGCATAGCAAATATAAAGATAGAGCGTGGATGAATTTGTGTTTGCACTCAAGTGAGTGTTTGTAGTTTTTTGTCGTTGTTTTATTTACAGTGGGTTGGAAATCATTTtagtacaatttttttttttttttttacacgcctCAGAGTCCTCAGACGTATAGCTGGATGTTGCCATGGTAATTTCACTGCCCGATTATTTTGTGAGATTTAAgttgaataaataaatccaaTTAATCCGATGCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158131 lncRNA upstream 34613 23856129 ~ 23856531 (+) True G117320
TU158126 lncRNA upstream 42198 23848687 ~ 23848946 (+) True G117315
TU158087 lncRNA upstream 145167 23742484 ~ 23745977 (+) True G117297
TU157998 lncRNA upstream 324827 23493106 ~ 23566317 (+) True G117228
TU157990 lncRNA upstream 417460 23472547 ~ 23473684 (+) True G117221
TU158159 lncRNA downstream 332 23897243 ~ 23897646 (+) True G117344
TU158161 lncRNA downstream 1739 23898650 ~ 23898912 (+) True G117346
TU158170 lncRNA downstream 13611 23910522 ~ 23915931 (+) True G117355
TU158175 lncRNA downstream 19847 23916758 ~ 23920029 (+) True G117359
TU158177 lncRNA downstream 19847 23916758 ~ 23919254 (+) False G117359
XM_039815576.1 mRNA upstream 176 23870051 ~ 23890968 (+) True gigyf2
XM_039815573.1 mRNA upstream 176 23871206 ~ 23890968 (+) False gigyf2
XM_039815574.1 mRNA upstream 176 23871206 ~ 23890968 (+) False gigyf2
XM_039815575.1 mRNA upstream 176 23871206 ~ 23890968 (+) False gigyf2
XM_039815578.1 mRNA upstream 176 23871206 ~ 23890968 (+) False gigyf2
XM_039814875.1 mRNA downstream 2297 23899208 ~ 23905529 (+) True LOC120567818
XM_039814876.1 mRNA downstream 3229 23900140 ~ 23905529 (+) False LOC120567818
XM_039814878.1 mRNA downstream 15860 23912771 ~ 23914295 (+) False hes6
XM_039815142.1 mRNA downstream 67038 23963949 ~ 24005011 (+) True clcn2a
XM_039815140.1 mRNA downstream 71257 23968168 ~ 24005011 (+) False clcn2a
unassigned_transcript_561 other upstream 22819 23868254 ~ 23868325 (+) True trnaw-cca_13
TU158130 other upstream 35987 23850879 ~ 23855157 (+) True G117319
TU158062 other upstream 205340 23677079 ~ 23685804 (+) True LOC120567964
XR_005640697.1 other upstream 1212413 22641510 ~ 22678731 (+) False LOC120568311
TU157733 other upstream 1278735 22608064 ~ 22612409 (+) False LOC120567968
TU158168 other downstream 8959 23905870 ~ 23908401 (+) True G117353
TU158169 other downstream 15753 23912664 ~ 23914498 (+) True hes6
TU158239 other downstream 125530 24022441 ~ 24023659 (+) True G117400
XR_005640839.1 other downstream 152853 24049764 ~ 24054704 (+) False LOC120569114
XR_005640838.1 other downstream 152853 24049764 ~ 24054704 (+) False LOC120569114

Expression Profile