RNA id: XM_039815584.1


Basic Information

Item Value
RNA id XM_039815584.1
length 1800
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC120568221
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24887761 ~ 24892439 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACATCAGTGAGCCCACCTGTAGCCGCTTTTGATTGGTTGTTGAAGCAGCCGCTCGCAGAGAACGTTCCAGTTTCAAAAAGCTGCGGCAAAGCAGAGTCCGTCAGCTCGTCCCATCGCCAGGAGTCATGTGCAACAGAATGAAGTGTGAAGGAACAGGGAAAAGCGCTACTGTTTACTTTGCCGCAGCTGTTATTCTGACGTGTTATTTGGCGCACACGGTAGACTGTAATCGACTGAAGAAAACGGAGTGGCGAAAAGAAGCCGATGCAGCCAGAAGGATAGGTTTCACAGAGGGGCAAATTGTGTTCGGGAGAGTTTTTGAGAAAGGGTCAGGTCTTGGGTCACAAGTCACACACCGGACCAATAAGTCTTCCTCAAACGCATCTGTAGAGGAGGACGCTGCATATCAAGCCGACTCCGCAGGCTGGgtggaaggaaaaaaacaaaatgctaaTTCTAGAGAAGCCGCATGGAAGCGCATGTCTCCCTCCTTGCAGTGCGGTTGGGACCAGTTAAAGTTCAGAGCAGTGGGACCAGGAGCTTTACAGTTTGCTGTGGAACAAGTAAATGCACCTCCGATACCTCTGTCCCAAGTCCCTTCCACCTGTGGCTACAGCATGCAGAGGAACTCTCTTGCGCTTGTCATGTTGGTTCCCTATGATGGCTGCAACGTGGTTCAAGAGGTTGGAAGTTATGTGCTCCCTATGCATTGGCAGGGAAATCCAGTCTCACTCTGGTGTCCcaaacctccaacacctgcacCAACCACTGTACAATCAGCAGCCACAGATCCTCTTCCTTTCTACCCACCGCAAGGTCTACCATATTTCTTTCCTCCATATCCTATCAATCTCCAATATCCAACTCCTGAGCCAGAGATGACTACACAAACGGCTCTCCCTGAACAACCCCAATATCCTTTCAGTCCCAGATCTTTCAATCCCCGTTGTCGAAATCCTGAGCCGGAGACGACGACACCACCAAAGGCTCGCCCTGAACGACCCAATGTCCACTTTCCTCGATATCGTTTCAAACCCCAATATCCAATTCTTGAGCCAGCGACGACAACACCACCAACGGCTCTCCCTGAACATCCCCAATATTTTGATCCCCAATATTTCGATCCCCAATATTATTTTGATTCCCAGTATTATTTCGATCCCCAATATCCTGTCGATCCCCAATATCCAACTCCTGAGCCACTAATGACAACACCACCAACGGCTCTCCCTGAACATCCCCAATATTTCGATCCCCAATATTTCGATCCCCAATATTTCAATCCCCAATATTATTTCGATCCCCAATATCCTGTCGATCCCCAATATCCAACTCCTGAGCCACTAACGACAACACCACCAACGGCTCTTCCTGAACATCCCCAATATCCTGTCGATCCCCAATATCCAACTGCTGAGCCACTAACGACAACACCACCAACGGCTCTCCCTGAACATCCACAATATTATTTTGATCCCCAATATTATTTTGATCCCCAATATCCTGTCAATCCCCAATATCCAACTCCTGAGCCAGTAATGACAACCCCAACTACAACAAAGAAAATGGATACATTTCAACATCACCTTAAATTTCCTTATCATCCTCCTTTCTATCCCCCTTACTCAAGCTACCCTTCTAAAAAATGGTTCTAATAAATGGTTTGAGTAAGTGACCCTgtccagtttttatttttaatttttttttgttgtacttgttAACCCTCAACTACCCCAGAAATTGTCATTTGGTACTGCATGTCTACGTGAGGAACAGATATTAAAAGGCTTTACTCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158548 lncRNA upstream 17679 24863027 ~ 24870087 (+) True selenot1a
TU158539 lncRNA upstream 49537 24837956 ~ 24838229 (+) True G117632
TU158430 lncRNA upstream 311764 24569578 ~ 24576002 (+) False LOC120568789
TU158431 lncRNA upstream 331109 24556419 ~ 24556657 (+) True G117547
XR_005640665.1 lncRNA upstream 548510 24337693 ~ 24339256 (+) True LOC120568139
TU158596 lncRNA downstream 95060 24987499 ~ 25043945 (+) False fgf12a
TU158635 lncRNA downstream 225792 25118231 ~ 25118502 (+) True G117704
XR_005640686.1 lncRNA downstream 233392 25125831 ~ 25130929 (+) True LOC120568228
TU158801 lncRNA downstream 856996 25749435 ~ 25749788 (+) False LOC120568894
TU158810 lncRNA downstream 883452 25775891 ~ 25793954 (+) False LOC120568895
XM_039815587.1 mRNA upstream 10807 24875001 ~ 24876959 (+) True LOC120568223
XM_039815588.1 mRNA upstream 18351 24862996 ~ 24869415 (+) False selenot1a
XM_039815582.1 mRNA upstream 25821 24853794 ~ 24861945 (+) True kif2c
XM_039815583.1 mRNA upstream 25821 24853794 ~ 24861945 (+) False kif2c
XM_039816633.1 mRNA upstream 50072 24808244 ~ 24837694 (+) True ptch2
XM_039816771.1 mRNA downstream 2116 24894555 ~ 24906946 (+) True zgc:153615
XM_039816772.1 mRNA downstream 4265 24896704 ~ 24906946 (+) False zgc:153615
XM_039815724.1 mRNA downstream 15398 24907837 ~ 24911335 (+) True LOC120568308
XM_039815412.1 mRNA downstream 44520 24936959 ~ 24939879 (+) True LOC120568131
XM_039815409.1 mRNA downstream 73226 24965665 ~ 24980880 (+) True rc3h1b
TU158470 other upstream 212013 24667893 ~ 24675753 (+) False LOC120569045
TU158471 other upstream 212013 24673924 ~ 24675753 (+) False LOC120569045
XR_005640839.1 other upstream 833062 24049764 ~ 24054704 (+) False LOC120569114
XR_005640838.1 other upstream 833062 24049764 ~ 24054704 (+) False LOC120569114
TU158239 other upstream 864107 24022441 ~ 24023659 (+) True G117400
TU158583 other downstream 58129 24950568 ~ 24954247 (+) True G117664
TU158802 other downstream 862654 25755093 ~ 25755890 (+) False LOC120568894
TU158814 other downstream 883452 25775891 ~ 25793954 (+) False LOC120568895
TU158825 other downstream 937616 25830055 ~ 25830695 (+) True G117829
TU158989 other downstream 1323288 26215727 ~ 26217041 (+) True LOC120568800

Expression Profile