RNA id: XM_039815589.1



Basic Information


Item Value
RNA id XM_039815589.1
length 5685
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC120568225
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 25114378 ~ 25135959 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TCTGCCCAGGGGAGGGAGCATTGGGCTGGGCACCCAATGGCCCAGCTCCCCTCTAGAACCAACCTTATCCTGGGTCACAGGGAATCCTTCTAGCTAGTCAATGAGTTGGACCATACAATGGATGGAAGTCTATGTGGAATTAAGTGGAATAGTGCATGGTTGCTCCAGCATAGGTCAGAGTTCACTAGCGTGCACTGGACTCATCAGGGGAAGACAGAAGACACGTTGGAACACAAACTAGCAGGGACACAGCCTCATTAATGCTGTGGAAACACTTGAAGAATGATGAGCTCCAAAGAGGAAGAAACTCTCCGTTTTTTCCAGTACGTTGAGGAGAATGGGCTGAGAGCCTACAACGGCCTGGTAGCTCAGAACTTAGACCACGCCAGGAATGAGAGAAATAGGACATTCCTGCAGGAGAAAAACGACAAGAAGAGAAAACAGGAGGAAGCCATAAGGAGGACAGGTGAGGACATTGCAACTGAAGGCAAGCACTTACGTATGGGCTCCATTACCATGCCGGACCCCCAGGAACGCATGCCCATGCCCCACCCGCATGCCCTCGCCTGTGGGCAAGGCTTCTCTGTACGCTCCCAGTCCCTCCACTCTGTCGGCGGTGGGAATAGTGGGGGTGGAGGCGAGGAGGAAGTAGGAAGCCCGACCTCTAGGAAGCAGCCCCCACCCAAGCCCAGGAGGGACCCGGCCACCAAGCTGAGCATGTCGTCGGAGGCGGTGGACCACAGTCCCACGTCCACCTGCCGCGGGGAGAGATGTGATGCAGCTCAAGGATGCAGTGAGGACTGCAGGAGGGTGCCACCACCCAAACCTAAGAGGAACCCCAACACACAACTGAGTGTTTCCTTCGATGAGTCCTACATCAAGAGCCACGGAGGCGGCGGGGTTTGCCCCTCCAGACCCCTCCACTACGTCACCTCGCCCTGCGAACGCAACCCCTCGCCCGCACAGAGTGACGAGAGCCCTACAGATGACTGTGAAGATGAACCTGTCTACATAGAGATGGGCGGGATTGATGTCGGAGCACGAGAACCCCTGAAGAGTGAGGATGAGGAGCCAGGAGAGTCTGTGTACGAGGAGATGAAGTACCCAGCTCTGGATGATATGGAGTACCGCACTGACCCTGTGGGATGTCGCTCGGCGTGCCCCACCCCGGCACCCTATGACCCTGAACCTCTCAGTCGCTGCTCCACACCTCGAAACATTCCCCTCTGTGACATTCCTGCACCCTTTCCCAATTTACTCACCCATCGGCCTCCGCTGCTGGTGTTCCCACCGGCGCCAGCCCAGTGCTCGCCTAACTCAGACGAGTCTCCCCTAACCCCTCTAGATGTAACCAAATTGCCCATGCTGGAGAACCAATCCTATAGCAAATCTCCAACATCCTCCACCGAGCCACCCTCCTCTGCACACATCCGCAGGGAGCTCACTGCCACCCCAACCCTCACCGTCTCTGGCCGCTCCTCTGCGCCTCCTCTACCCTGTACCCTCTAcaaatcctcctcatcctcctatCAGCGGAGCCACTCCGCTTGCCCATCGCCAGTCAGCATGGGCCGCTGTCTCACACCTCTCAGCCTCATGCGTACACCTCCCTTTGAAGCTCCAATGCCATTCCCTGGGGGTCTGCCGCGGAGCGCCTCTGCCACCCCTCACGGCAAAGGCTCGCCACCTCAAGACGGTGTGGGTCGACTCCATGGCTCCATGCAGAATGTGTCAACAGGGCGTTCACGGACACCCACCAGCCCACTGGACGAACTAACTAACCTGTTCACAACTGGTAGGAACATGCTGAAGAAAAATGCCAGTGGCAGGAAGTCTAAAGAGCCTGGAGAGACTGAGTCGAAAAGCAAGTCTCACAGCGAGTCCAAGCGTGAGGGCAAAGAGCGCCACAGTCACAGCAAGGAGTCCAAGCGAGACTCCAAGGATCGCCACAGCAAAGAGTCTTCTCACCGGAGAGACAgggacaaagacagagacaaaaacagagacagagacaaaaacagagataaagacagagacaaagacaaagacagagacagagacagagacaaagacaaagacaaagacaaagacaaagaaagagacagagacaaagacaaagacaaagacaaagaaagagacagagacagagataaaGAAAGAGGGAGCAGCAATGTAGAGCCACTTCCCCACAGACGCAACAGTAAAGACCGTACTTATAGCGGTGCAGATGCACCAGCTGTTCGCAGGGATAGCAGGGACCAGGGCTGCAGCAGTGTGGAGCCCATCCCATTGATAAGACGAGACTCCAAGGACCGAGGGCTTAGCAATGGTGACCTGATGCTAAGGAGAGACAGCAAAGACCGGGGTGGGGGACATGGAATGGAGTCTTTGTTGAGACAAGACAGCAAAGACAGACTGCTAGATCAGCCACCTGAGCTGTTACCAAGGCAAGACGGCAAGGAAAGGGCAAGAAACGGTGTAGACTCTAGACATGAAAGCAGAGAGAGACTGCTGGATCAGCCACCTGAGCTCTTACCACGACAGGATAGCAAAGAGAGAGCCAGGAACGGTGCGGACTCAAAGCATGAAAGCAGAGACAGGCCACCTGAGCTTCTCCCCCGACAAGAGTTCAAAGACAAAGCCAGAACCGGAGCTGAATATAGACACGATAGCAAAGACCACCGTCCTGAGGTGTTACCCCCGCAGGATTTTAAAGAGAGAGCAAGGAATGACATGGAACATAGACATGAAGGTAGAATAGACCAGCCACCTGAGATCCTTCCGCGACAAGAAACGTCCCGAAGAAGCAACAGCAAGGACACGGTCGGCTACAGCTCCGAATCCAAGCATGAGGGGAGAGATCGGAGCTGCCACAACGGGGGAGAtctccctcctccacctctGCCCAGACAGGACAGCAAAGATCTGAGCAGAACTGGACTCGAAGTGAGACGGGATAGCAAAGACAGAAGTCTGAATGGCTCAGAGCAGCATCATTACGCTGTCAAAAGCACCAAGAGCCCTTCCGCAATGGAGTATAGGTGCGATAGTAAAGAACGAGGATACAGATCAGATGGCACGCCCAGACGAGATAAAAGAGAAAATTACAGCACGGACCAATCAAAAGCACAAGAGAGGAATGGCAGCACGGTGTCAGGGCAGCATTCATCCACGACGACACCTACTCACCACGCGAGATCGTCTGGTAGCCCACCAATGACCATAGGAACCGGAAATGACCTGAAAGCAGCACCGAAGTATGGTCGCTCACATTCTATTCCGGCCAACCCCTCTCCGATGGGAACGCCACAAAGGAAAGCAGCGGAGACACATCAAAGTCAGATGCCCCAGATGCCATGGATCTGTGGCGACACCACCATGCTTGAACAGATCGACAGGAAACGCACCCTCTGCATGGAGATTCGCTCCAGACAACATCCACACCTGCAGAGATTTCTGGAgaggcctcctcctcctcctccggaCAGGAACGAGGACAGGCACCAGGAGCGGAGTCAGTGCAAGCAAGAAAGTGCATCTGTGCTGCCAGGCTGGGGGAAAAGCAGCGGGGCCAAAAAGATCCGTCCTCCCCCTTACCCTACACAGAAAACCGTATTCTGGGACACGGCCATCTGACATTAACAACACACTTACACCTCCCTGCCACACAACCCCCAATTaccctctccctctttcctctgGGTTAGGCTGATTCTTCCCTGCAACATCAGGGGCGTCAGGGCAGCCAATAAGAGCACAGGGGGATGATACTCGCTGATGTCAAAGGACAATGGTGGTTACCATAGCAATATTTCTGCTCGTTCAGGTTGTCATGTTTTCTTATCATCACTGgtgatatttgatatttttcTATTTCCTGTGACTGGATTCTTGTAATATAATTAGTAGAATAGATATTTGATTGATAGATATTTTCTAAATGAGAGGAGGATTAAAAAAGAGGCTTAAATGATGTATAGTAGATGTAGATGCAatctaatgtttgtttttatgttatttttgttgGTTATTTTACATTTGAAAGCATAATCTATCAATACTTGTACTGTTGTAGCATAATTTTCTTATGCCcaactctttttctttctgtgcttGAAAGCACTGAACTGAATGGACTATTCAATTCTGTCTATATATACTTTTAAATTTTCACTGTTGTATTGTAAGTTGAGGAATTATAGTGCTTTAGATTCCAGCGCCCTCCATGCCTGGTCCAGTACAGTATGTTCTAGAATGTACAACAGTTGGTCCTAGAACATAAACAGGAAACTTTGTGTGCTTCAGTTTGTATATTACAGTAAGAAGCTGTGCAGTCACTAGTGAAAGCCTTTTGAAGCAGTTGAATCATTTTATAGGAAAACCTGTTGGCTGGCATGTTGTAGaggacagagaaagtgtgaaacGCTGTTGTCTAAGATACACTATGAGGGTGGGTTTGGGAGGTAGTAAATTAGAACATACATTATTAACagtataatttccaaaaccagCCAAAGCCTGTTAAAGCGAGATAAAGGTGTGGTTGCACTGTGGACAGTTGGTTATTTGAAATGGGCTTGGTGGCCATGCACACCGCGAGCACCATGACACAGTGTAAATACTTGATGCCAACGACCCGCCCGTACAATCAACACCTGAGCTTTTAGAGCATTTTCTTAATTTTACTGCAGATTATAATAGCCATATGCACTTGCTTAAGAAGAACTTTCAAGATtatgcttatatatatatttttgaaaatgttaaaGGTAGCTGTGCCATGTAAGTTTTTAATTTCTTGGCGGGGAGGTAAAGCCTCAGGAGGCTGGCTGTGTGTGACACACAGTCATCTATGATTGGTTGTCTCTGACAATGTTCCCAATTCAATTGGCTGGCAACCATTTTAGAGATCAAATTATTTAAGGACCTATAACATGGCAACAGCTCTACCCAGTCAAGCAGTCAGGGGTTGCACAATGGCCTACAAATCTTTGAGgctttgtaaaaaaagaaaagaaatctgcACTACCCATCATATTCCATTACATTAAATCAGGCTGATTACGTACAtgcccctctctccctctaccTCAACCTCCTACTTACATCATCTAAATGGGTTTTCTTTAGCACATTAAAATGCAATGTCGACATTGCCAAAATAGTGTGGGTTTGACAAATGATATAGCCCTTAGAGTGCAAGTGCAGTACCCCCTCACTGGTGAGAATCAATGCTACAGAGGTCCCTCTGTGTTCTACgtgtaactgtgtgtgcgtgtatgtgtgcatgggtgcgtgtgtgtgtgtacgtgtgagggagggagagagcggtgtgcgtttgtgtctgtgtgccaaGCTACACTGTATGCAAGTTGAATCTTTAAAAATGATTGTTTTAAGACATTCACTTTGCCCTATCCATGATGTTGGTGGGTGGAGGTTTGGAAATGTAATAATGATGATGTACAATCTTTTTGTGTGTATAAACGTGCACTGTGAAAAGTTAGAGAGAGCACCGCACTGTCAGAGTCCTCTGTCTTATTGCACTTGAGTGTTCTCTTGTTTTGcgtaataaaaaagaaaaggaaaaaacatgTTTGAGGAAAAAAGTACTGTATTCTGATTGTCACTTGGGTTCTATTGagagaaacaaataaatatgaaCTTGAAACCCGCTATGGAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
XR_005640664.1 lncRNA downstream 66364 25023401 ~ 25048014 (-) True LOC120568137
TU158661 lncRNA downstream 221919 24876086 ~ 24892459 (-) False G117718
TU158662 lncRNA downstream 221919 24876086 ~ 24892459 (-) True G117718
TU158664 lncRNA downstream 221919 24876086 ~ 24892459 (-) False G117718
TU158657 lncRNA downstream 245947 24863009 ~ 24868431 (-) True G117716
TU158767 lncRNA upstream 147947 25281408 ~ 25335213 (-) True G117786
TU158772 lncRNA upstream 216765 25350226 ~ 25353750 (-) True G117788
TU158773 lncRNA upstream 216765 25350226 ~ 25373646 (-) False G117788
TU158798 lncRNA upstream 459582 25593043 ~ 25593585 (-) True G117812
TU158799 lncRNA upstream 460812 25594273 ~ 25594757 (-) True G117813
XM_039815405.1 mRNA downstream 29029 25055225 ~ 25085349 (-) True LOC120568128
XM_039815422.1 mRNA downstream 112596 24997381 ~ 25001782 (-) True LOC120568136
XM_039815416.1 mRNA downstream 121768 24987589 ~ 24992610 (-) True zgc:110366
XM_039815408.1 mRNA downstream 149414 24950498 ~ 24964964 (-) False si:ch211-13f8.1
XM_039816729.1 mRNA upstream 762177 25895638 ~ 25917773 (-) True pax3a
XM_039816736.1 mRNA upstream 829912 25963373 ~ 25968420 (-) False LOC120568965
XM_039816735.1 mRNA upstream 829912 25963373 ~ 25968420 (-) True LOC120568965
XM_039816737.1 mRNA upstream 839270 25972731 ~ 25988947 (-) True LOC120568966
XM_039814882.1 mRNA upstream 918638 26052099 ~ 26058572 (-) False LOC120567824
TU158687 other downstream 191060 24922203 ~ 24923318 (-) True G117732
TU158445 other downstream 577882 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 1092877 24021439 ~ 24021501 (-) True LOC120569138
XR_005640840.1 other downstream 1093940 24020362 ~ 24020438 (-) True LOC120569137
unassigned_transcript_562 other downstream 1245152 23869155 ~ 23869226 (-) True trnap-agg_8
TU159298 other upstream 1528160 26661621 ~ 26665952 (-) True G118175
XR_005640672.1 other upstream 1686377 26819838 ~ 26824570 (-) False cirbpa
TU159721 other upstream 2537515 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 2580006 27713467 ~ 27714390 (-) False G118524
TU159738 other upstream 2584090 27717551 ~ 27718759 (-) True G118524

Expression Profile


XM_039815589.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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XM_039815589.1 Expression in each Bioproject

Bar chart with 6 bars.
XM_039815589.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
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