RNA id: XM_039815593.1


Basic Information

Item Value
RNA id XM_039815593.1
length 4390
RNA type mRNA
GC content 0.47
exon number 9
gene id gpc5c
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 25140737 ~ 25262341 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAGGAAACAGACATGCAGACAGCCGACCACTGCAAAGTGTTGAGCGCGGGACAGACTGGCTTCAGCCCACACCACTCTGGCTCTGCCCAAGAGAAGACCCCCAAACCTCTGCTGTGTGACGCGCTCCCACCTCATCCCAACCAATAATGTGAAAATCAGACGGACGCGTTTGTCAGATGTTTAAACTCATCGTCGCTTCGTTGTAGCCTACCTGAGCGCCGTCTATTTTTTCAACACTGTCACCCAGTTTGCAGCCAGGCTACAGAAGGCTATCCACAAGGATACCTGGTGTGAGATGCGGCAATGTCCCGAGGAATATGCCCACGCGTAAACTCTTGCGGAGCCTTTTGGATTTTGTCAGCGGTCGTATTTGCGGCGAATGTGATCGACACGGACGCGTACAGCTGTCACGAAGTGAGGACCGCTTTCCAGCTGCGGCAGGTCGGGCCGCTGCACCGCGTACCGGAGGCACCTGGCACAGATGTGGATCTGTTGGTTTGTAAGCACCCGGGTCCGTCCTGCTGCACCCGGAAGATGGAGGAGAGCTACCAGTTGGCTGTAAAAAGAGAAACACTTCACAACATTCAGTCCTACAGCTATGAGCTCGAGCACCTCATCTCCGGCCACTCGGATGCCTTCCAGGACATGTTCCAGTACCTTCTGTCCTTCTCTCAGGGCCACCTGAGTTCTCTGTTGGAGGGAACCTACTCATCCCTGTCCCGCCATGCCCTACCCCATGTTAACCAGCTCTTCTCCTCACTCTCCCTCTACCTCCGCGGGGCCAACGTCTCCATGGAGGCGTCAGTTCACCAATTTTTTAACAACCTCTTCCCGCTCGTCTACACACGGCTCATCAATCCAGGCATTGATGGCAGCATGATGATGGGCAGTGAAATGGGTGACTGTCTCCGTATGATCAGGCAGGATGTCAACCCTTTTGGGCCTCATCCAGCCGTCATGGCCCAGGAGCTGGCTGGGGCGTTGGGAGCCGGGAGACAACTGGGCCTGGccctggaggagggtctggagCTGATGAATGCCACTGAAAATGTCAGCATGAGCAAAGAGTGTGTGAAGGGCCTGGTGAAGATGGTGTATTGCTCCCACTGCAGAGGCCTGACGCTCATCAAGCCCTGCGTGGGCTACTGTCTGAATGTAATGCGAGGCTGCTTGGCCAGCGTGTCAGAGCTGGATCAGCCTTGGAGGAGGTATACCAGCCTGTTGGAGCAACTAACCCACGCCATGGCGGGGCACCACAGTCTGGAACTAGCCCTGCTGGGGGTTAGGGAGCACGTTAATGAGGCCTTGCTCTACGCACAGCTCCATGGTCCACTCATCACTGCCACGGTGGACAAGGTATGTGGCCTCTCTACTGGGGAACCTACAAGCATGCAGCCTACAAGCCCAGAGGTCACAACCTCTACAATGACCTCAtcttctcttcctccatctGCTGCCCCCTCCCAACCTCTACCAGAGCAGTGGCTGGGGCAGTTAGCCCACTTGAGGAGCCCGTTCCCCCTGCAACCCTCCAAGAACAATAAACATAGTCTGAGAACACTCTCTAGGGAGTTCTTGATGTACCTGCAGCGCTACAAGTCTTTCTTTGCAGCGTTGCCAGAGATGCTGTGCGAAGGGGAGAATGTAGTAGACGACTCCATGTGCTGGAGCGGAGATGAGGTGGTGGAGAGcTATACTGGCAGAGTTGTAGGAAATGGTCTGCACGCCCAGAGGCAAAACCCAGAGGTCAAAGTTCGCAGCCCGAACCCTACACTGGCTGAGGTCAAGGAGAGGTTGGAGCGCTTTAACCAGGAGACTCAGGAGAGGTTTCCAAAACTGGGCCAGATGGAGGCCTGGGATGAACTAGGCAGTGGGGAAACAGAGGAGAGCAGCACCACAGACTGTGATGATGAAGATGGATGTCAAGCCTCAGGAGATGGTCAAGACCAGACCTCAAATCCAGAAGCTTCCAGTGAAGGAAAGCCCATTGGGAGACAGCCTGGAGGTGACAGCCCACATGAGAACCCTTCCAAGCCCCCCCCAGTAAAAGTGATAGGGGGCTCGGCGCCTGCCAGCTGGGCACGGCCCTGGAGCGTTGCGCTGCTCTTTGCTGCACTTTGCTTGCAGTGGACCCTGTTCTGATGCCAGCGCCCTCTGTGAATCCACCGCTGACACCTGCCCCCTTTAGGAACCACATACATGCACAGAGACACTCATATCATATACATATCACGCATAGTATCCTTACTCCTGTCCTCAACGTACTTGAATGGATGGTAATGATGGAAAAATGGAAAGCAAGGCAAGGTGTGGAAGAGAAGAGGACAACGTTGTAGGAGACTGTAAACGGGAGCCTCTTGCAGCAACTTGTAGTCCTGCACCATTGTGGGTGTGCGCACAAGCTAATCTCATGCACGCTCATCTACGAAGATTAGGCCAGCTGCTTCTTCTTGGCTGTTGGGGCTAGACGTTTGTGTATAAAGACGCCAATACAGCCCCACCACTCACACAATCACACCCTTTGTGGTTAAGAATGGGACTGCATCATTCTGTTTTTACTTAAAAGCGCTTACACATATACAGACTCATATTTTGTTTCACATATAACGTTACAGTAAAAATGCAGCCATCTTCTCTTTCTGCTGTtggtttttacttttactttctggcaaaaaaaaaaaaaaaactcctcacGCCCATTGCACATTTCGCCAGCCAGGCAGAAGAATTCATATCATTTGAAAACTCAACTCATTTTCTTTTCGAGGATTAAGGAATGCATGATAGATTGATAGATCAATCCCAGGTGCCTGGCCCAGAACAGCAGATTTGATATACTCTAATGACTGTGTACCTTGGCGGGGGATTAAAATGTAATGAGTTCACAGGTAGAGCACGGGCGGGCACACTTGCACGGCTGAACACATTGTGCAGACAAACTAGGTGTGTATAGTATGTAACTGTATATAGGTGGAAAGATTTGATGGAGTGTATGAGGTTCTGATTCAACAAAAAGCTCTTAACTGATTGAGCTGAAGAATATTTTCCCTTAGCTATGAACGGACTGTGCTTGTCTGCTACATATATAAcgatgcaaaaaaaaactatagagATTTCATTTCTGTAAGAAATAAAGCACGAATTCACATCATTTTCCAGCTCAAGCCATTGACATAAATGGATACATTTTGGATGTAGCCTGTACATTGTTGATTTTACTAATGTTTATTGTGCATCcagttttgtgtgtttgctcaTTGAATTGCACAATAATGCATGAATAACCTACCGAGTTATCAAAAATGCTATAGTAGGATCAGGCCCTTCTTGGGAAAGCATCAAAAacgtatattatatatataacgtATATTGCCTTTTCCATTACATCTCTCTGATGGTTTAACGTCAGGTATTATCTTCATCTCTCAAAGGACAGTTTGGAACTTGAAAACAAGAGGAAGGTTGGGTTGCAGAtccaacacatgcacacacacaaaaagacatagaatattttttacaaagttgGGTGCATCTATTGTCCAGTGGTAGCCACTGTGTCCCACAAGTCCCTCTTTGTGGATGTATCATACATTTTGCCAAAGAGCTCTAATGTCTCTTCACTCACTGTTAGCAGACCATTCCTTGGAATTCCAACAGAATACATCCTTCTGTGTTTTAAATGATTCCTCATGGGGATGGAGCAAAagggaagttaaaaaaaaagctgtgtgACTATTATAATGGCTTCCTCTATATACCTGTTTTCTCTCTTGTGTAGAAGTGAATGGTTGATGTACTGGTACAGTAAAGTACCTGTGTGAATGAGAATGAATGCATGGTCAATGCtatgcagatacagtattaaaccTGATAATGCCTAAAAGCTACACAGATACAGTATCTAAGCTAAATAGGTCTATACACTTACATGGGTCTATGTGCAGTGAAATACCTCTTCCAATAACAAGCCTGTGTTGTAAACTACTCTTCCTCTCCCGACTGAAAAGTAACTCACCGTTGACTCAGCCTAAAAGTGGAAGAAGGATGCTTAACTACTTGCATATAAATATATGGTAATTATACATTAAAGCATGGCAGTAAATGAAGAATGGAGATGACTGCAGCTACGTAAGGTTTTGGCAGTTTTAATGTGTCACATCTTGTGTTCTGTAACCACATTTGTTTAGTTCATATGATTTCCACCATGTATGTTTTGTTCATGACTGTTGTTCATTGCACCCACAGATCACTTACAGCCCTTTACCCTCGCATGTGTATAAATGTACATATTTTAAGTCACTCGccatttgttttgtgtctcatTTGGTCTCTTTTTGTATCAGTATGATACAGTGCGGCTGAGCTCTATTAAAGCTGCTCTGTTTCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640686.1 lncRNA upstream 22237 25125831 ~ 25130929 (+) True LOC120568228
TU158635 lncRNA upstream 34664 25118231 ~ 25118502 (+) True G117704
TU158596 lncRNA upstream 109221 24987499 ~ 25043945 (+) False fgf12a
TU158548 lncRNA upstream 283079 24863027 ~ 24870087 (+) True selenot1a
TU158539 lncRNA upstream 314937 24837956 ~ 24838229 (+) True G117632
TU158801 lncRNA downstream 487094 25749435 ~ 25749788 (+) False LOC120568894
TU158810 lncRNA downstream 513550 25775891 ~ 25793954 (+) False LOC120568895
XR_005640804.1 lncRNA downstream 519834 25782175 ~ 25793191 (+) True LOC120568901
TU158824 lncRNA downstream 567423 25829764 ~ 25830695 (+) False G117829
XR_005640803.1 lncRNA downstream 609988 25872329 ~ 25873402 (+) True LOC120568900
XM_039815404.1 mRNA upstream 39364 25085974 ~ 25113802 (+) True LOC120568127
XM_039815421.1 mRNA upstream 109109 25006574 ~ 25044057 (+) False fgf12a
XM_039815908.1 mRNA downstream 18963 25281304 ~ 25353783 (+) True LOC120568394
XM_039815787.1 mRNA downstream 113844 25376185 ~ 25557632 (+) True LOC120568352
XM_039815789.1 mRNA downstream 113844 25376185 ~ 25557632 (+) False LOC120568352
XM_039815788.1 mRNA downstream 113844 25376185 ~ 25557632 (+) False LOC120568352
XM_039815790.1 mRNA downstream 113844 25376185 ~ 25557632 (+) False LOC120568352
TU158583 other upstream 198919 24950568 ~ 24954247 (+) True G117664
TU158470 other upstream 477413 24667893 ~ 24675753 (+) False LOC120569045
TU158471 other upstream 477413 24673924 ~ 24675753 (+) False LOC120569045
XR_005640839.1 other upstream 1098462 24049764 ~ 24054704 (+) False LOC120569114
TU158802 other downstream 492752 25755093 ~ 25755890 (+) False LOC120568894
TU158814 other downstream 513550 25775891 ~ 25793954 (+) False LOC120568895
TU158825 other downstream 567714 25830055 ~ 25830695 (+) True G117829
TU158989 other downstream 953386 26215727 ~ 26217041 (+) True LOC120568800
TU159070 other downstream 1133085 26395426 ~ 26402078 (+) True G118011

Expression Profile