RNA id: XM_039815603.1


Basic Information

Item Value
RNA id XM_039815603.1
length 1970
RNA type mRNA
GC content 0.53
exon number 8
gene id trim110
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12720716 ~ 12725372 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGCTCATGTGACTTCTCTGGGTCCAGTGCCACTAGGGGGAGGTGAATCTGTTAGGATTAGCCTCCACATACACTCATCGATGGCCACAGTCTGCAAACACCAGGTCACCAACAGTTAGTAGCattgtgtgacacacacacacacacacacacacatccgggACCCTTCATCTGCTCACTATGTCGTCCCTGGAGGAAGAGCTGACCTGCTCTGTGTGCCGAGACTTCTTCAGCCAGGCCCACCCCCTGCCCTGTGGTCACAGCTTCTGTTCCGCCTGCATCCGCGAGGCTTGGAGTGTCCAGGCTGAGGGCAAAAGTCGCTTCACCTGCCCCCAGTGTCAGGAGGAGCACGGTGAAGTGCTGTGTGACTGCTGCCCTCCCAAGGCAGTAGAGGGACAGCCACTGTTGGCTGTCAAGACCTGCCTGAAGTGTGAAGTGTCACTGTGTGCCGAACACCTCCAACCCCATTTGGAGAGACCGGCGTTTAGCACCCACCTGTTGGTGGATCCGCTGGGGGACCTTTCCCAGCGAAGGTGcccgacacacacagagatattgCGCTACTATTGTGCCGATGAgagggtgtatgtgtgtagtgaCTGTCTGCTGGACGGAGGCCATGCTCAGCACAAAGTGAAGGCACTGAGACAAGTGGAAGAGGATCTGAAGGTCATTCTCCAGGTCCTGCTCAGCAAAGCAGAGGAGAAGCTGAAAGATGGAGTGCAAATCCTCAAAGAGCATGAGGGCATTGATTCAACCATGGCTGACTCTCTGAAGAAGGATCACACCCAGGTGGAGCGGCTGGGTTTAGACCTGCAGGTCCAGGTGAAAAGGCTGGTAGACGCTCTGAGGGAGATCACCAAGAAGGAGAAACAGCAGGTCATAAAGCGTGTGCATGAAGACTGCTCCAGGGTGAGAAGCGACATGTGCCAGGCGCTGAGCATACAGCGCTACCTGGCCTCACTGCTGGCAGAGACGGACCCCTTCCTGCTCATCTGGGCCTTTCAATCAGATGACACAAAGTTACTAGCTGACCTGAACAACCCACTTTTTATCCCTGATGCCGTCAGTCTGGACAGGAAACACATCTTGGAGGACATCGAGAGCAAGTATCGAGAGTTTATCACCGGCACCCTCCGCTGCCTCAGTGAACTCAAGAGGGAGCTCTTATCCAGTCCTTTGACTCTGGACACTAACACAGCCCATCCTCTGTTGAGCATCTCTGATGATCTTCGCTCAGTGACACGGGTTAAAAACCGCCTGCCCTGCGCTGCTCACCCCGAACGTTTCGACCACTGGCCGCAGGTCCTCACCACCCAGGCCTTCACCTCTGGGACTCACTTCTGGGAGCTGGAGGCTGAGGGATTCTGGGATATTGGCATCTGCTATAGAAGTATTGGACGGAAGGGGAAAGATGGCAATGCCTTTGGGAACAACAAGGTATCATGGAGCTTGACACAACAGCATGACAGGAAGCTGGCTGCCTGGCACAACCGCAGGAAGACCCGCCTCACGTACCAAATGACCGGCAACCGAGTTGCCGTTGCCGTGGACTACGGCGCAGGCACCGTCACCTACTCCGAGGTGGGACCATCAAACAACCTGACCCACCTCTACACTTTCTCCACCTCGTTCACTCAGCCGGTGTGCTTGGGCTTTGGACTCTACAAAGCTGAGCTCAACAGCCGCATCTCTATCGTCAAACTCTGAGGTGGAGAAAAGGGGAAGAAGGAAAAAGTAATGCTGACAGACAACAGGCTGGTTTAACTTAGACAAAGTCAAGACAAAGTGGTGTTAATTTATTTCCCCACTTCTGGAGCCTTCTCTGATGTTTCTCTCCTCTCAGATCTCAGCCCGAGCTCATCTTCTTCCTCAAAAAGACAATAAACCATATCCCTAAAACTGTGATCAGGTGATATTGACATGGAAATATCAGATATATTTGAAAATAAAGCATTCAATGAGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153466 lncRNA upstream 93197 12626079 ~ 12627519 (+) True G113852
TU153452 lncRNA upstream 117794 12601183 ~ 12602922 (+) True G113843
TU153404 lncRNA upstream 363995 12356340 ~ 12356721 (+) True G113811
TU153359 lncRNA upstream 499032 12221376 ~ 12221684 (+) True G113782
TU153354 lncRNA upstream 511276 12208714 ~ 12209440 (+) True G113778
TU153668 lncRNA downstream 52968 12778340 ~ 12779398 (+) False G113938
TU153670 lncRNA downstream 52968 12778340 ~ 12779398 (+) False G113938
TU153671 lncRNA downstream 52968 12778340 ~ 12779398 (+) False G113938
TU153673 lncRNA downstream 52968 12778340 ~ 12779398 (+) True G113938
TU153701 lncRNA downstream 136253 12861625 ~ 12874310 (+) True G113956
XM_039816761.1 mRNA upstream 36020 12665232 ~ 12684696 (+) True acin1a
XM_039816176.1 mRNA upstream 57518 12632485 ~ 12663198 (+) True si:ch211-14a17.10
XM_039816234.1 mRNA upstream 104106 12612142 ~ 12616610 (+) True LOC120568617
XM_039815224.1 mRNA upstream 109558 12609157 ~ 12611158 (+) True LOC120568040
XM_039815225.1 mRNA upstream 109876 12609157 ~ 12610840 (+) False LOC120568040
XM_039815604.1 mRNA downstream 240 12725612 ~ 12728919 (+) True cbln12
XM_039815605.1 mRNA downstream 1479 12726851 ~ 12728919 (+) False cbln12
XM_039815615.1 mRNA downstream 5073 12730445 ~ 12751968 (+) False chd8
XM_039815612.1 mRNA downstream 5073 12730445 ~ 12751968 (+) True chd8
XM_039815606.1 mRNA downstream 5073 12730445 ~ 12751217 (+) False chd8
TU153451 other upstream 133553 12582642 ~ 12587163 (+) False ap1g2
TU153339 other upstream 560461 12157451 ~ 12160255 (+) False LOC120568189
TU153340 other upstream 560461 12157516 ~ 12160255 (+) False LOC120568189
TU153118 other upstream 1377025 11332597 ~ 11343691 (+) False pkia
unassigned_transcript_556 other upstream 1834238 10885600 ~ 10886478 (+) True LOC120568835
TU153727 other downstream 203843 12929215 ~ 12975637 (+) True G113979
TU153737 other downstream 227208 12952580 ~ 12957356 (+) False LOC120569010
TU153768 other downstream 389277 13114649 ~ 13117356 (+) False rpl37a
TU153770 other downstream 397683 13123055 ~ 13125463 (+) False ndufb3
unassigned_transcript_558 other downstream 492767 13218139 ~ 13218210 (+) True trnae-cuc_17

Expression Profile