RNA id: XM_039815636.1


Basic Information

Item Value
RNA id XM_039815636.1
length 1131
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC120568251
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15480028 ~ 15483769 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACATCACTTCAACTGCACCCAGGCTTGTTGATAGCTCATTTTGGCATCATGGCAGAGCTCAGTTTCAACGTGAATCATGGTTATCTGGAGGGTCTGGTTCGCGGAATGAAGGCCGGAATCCTGACTCGCACCGACTATCACAATCTGGCCCAGTGTGACACACTTGAAGACATGAAGCTGCATCTGCAGACCACAGACTACGGTAAGATGTTGTCTTCGTCTGAAGAGGACCTGACTGTGTCTATGGTGGATAGCAAGCTGAGGGAGAACCTGCTGACTGAATTCAGCTGCCTTCGCTCCAACGCCCTGCCTCCACTATCTACCTTCCTTGACTACATAACCTACAGCTACATGATTGACAATGTGGTGATGCTGATCACTGGTGCCCTGAAACAGAGAGATGTGGCAGAGCTCCTCCCGCGGTGTCACCCACTGGGAGCCTTTGACCAAATGGCAGCAGTGGGCATCGCTCGTACCCCAACTGAGCTCTACTCAGCCATACTGGTGGACACACCACTAGCTCAGTTTTTCCAGGATGCTGTGTCTGAGAGCAACCTGGATGAAATGGAAGCGGAGATCCTCAGAAGCAAACTGTTTAAGGCATATTTAGAGTCTTTCCACTCTTTCTGCAAGACCATTGGTGGTGACACAAAAGATATCATGTGTCCTGTCCTCGAGTTTGAAGCAGATAGACGGGCCTTCATCATTACAGTGAACTCCTTCGGGACAGATCTCAGCTGTACAGACAGGAGTGCATTGTATCCatcttgtggcaaactttaccCTGAAGGGCTGTGCCTGCTGGCCAGGGCAGAGGACCACGAGCAGGTCAAAGCAGTGGCAAACTGTTACCCAGCATATAAAATCATTTTTGATGACCCTGAGCCAGGATCAGGTTTTAAGACTCTGGAAGACAGATTCTTTGAACAAGAGGTGAAGCTGAACACACTTGCTTTCCTGCAGCAATTCCACTTCGGAGTATTTTACTCCTACATCAAACTGAAGGAGCAGGAGAGTCGCAACATTGTCTGGATCGCTGAGTGtgtcacacagagacagaagtCCAAGATACACAACTACATACCCATCTTCCAACTTAACTGagcaataaagacaaatacatACCTATA

Function

GO:

id name namespace
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02146 ATPeV0D, ATP6D; V-type H+-transporting ATPase subunit d

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155002 lncRNA upstream 24653 15444478 ~ 15455375 (+) True G114909
TU154995 lncRNA upstream 42275 15436104 ~ 15437753 (+) True G114905
TU154994 lncRNA upstream 47084 15432671 ~ 15432944 (+) True G114904
TU154979 lncRNA upstream 61980 15416732 ~ 15418048 (+) True G114889
TU154948 lncRNA upstream 111255 15366957 ~ 15368773 (+) False LOC120568540
TU155048 lncRNA downstream 65360 15549129 ~ 15549920 (+) True G114944
TU155046 lncRNA downstream 65537 15549306 ~ 15549920 (+) False G114944
TU155054 lncRNA downstream 82625 15566394 ~ 15568494 (+) False slc35a3b
TU155105 lncRNA downstream 141333 15625102 ~ 15625323 (+) True G114991
TU155115 lncRNA downstream 193324 15677093 ~ 15677343 (+) True G114998
XM_039814715.1 mRNA upstream 1566 15472702 ~ 15478462 (+) True asip2b
XM_039816196.1 mRNA upstream 48254 15421740 ~ 15431774 (+) True ccdc39
XM_039816566.1 mRNA upstream 58870 15418264 ~ 15421158 (+) True dcun1d1
XM_039816671.1 mRNA upstream 97698 15375813 ~ 15382330 (+) True b3gnt5b
XM_039816110.1 mRNA upstream 111248 15338990 ~ 15368780 (+) False LOC120568540
XM_039815637.1 mRNA downstream 37013 15520782 ~ 15528442 (+) True zgc:153115
XM_039816218.1 mRNA downstream 50888 15534657 ~ 15536850 (+) True tsen15
XM_039816217.1 mRNA downstream 63020 15546789 ~ 15548920 (+) True sec22ba
XM_039814631.1 mRNA downstream 70702 15554471 ~ 15567869 (+) True slc35a3b
XM_039815274.1 mRNA downstream 89482 15573251 ~ 15579524 (+) True cmpk
TU155017 other upstream 1684 15472743 ~ 15478344 (+) False asip2b
TU154847 other upstream 322829 15151796 ~ 15157199 (+) True G114789
TU154338 other upstream 1184035 14289537 ~ 14295993 (+) False LOC120568245
TU154336 other upstream 1184760 14287150 ~ 14295268 (+) False LOC120568245
TU155036 other downstream 37030 15520799 ~ 15528769 (+) False zgc:153115
XR_005640849.1 other downstream 238370 15722139 ~ 15722248 (+) True LOC120569147
XR_005640848.1 other downstream 238738 15722507 ~ 15722573 (+) True LOC120569146
XR_005640846.1 other downstream 239366 15723135 ~ 15723203 (+) True LOC120569144
XR_005640847.1 other downstream 239960 15723729 ~ 15723797 (+) True LOC120569145

Expression Profile