RNA id: XM_039815638.1


Basic Information

Item Value
RNA id XM_039815638.1
length 2977
RNA type mRNA
GC content 0.52
exon number 16
gene id tgs1
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8189403 ~ 8203101 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaccttgccAAGTGTCAAATGCCATGGGTCCTTAAACAGCAAAGCTACACGCAGAGCTCACCCTCTGCCACAGCATCACTCTACAAAACACGTCGTCCTGCAGTTTTATTCTGAAAAGACATATCCGGAAATGCCAGTGTTGTCCCGGTGTCGTCCTAGCGGAACTGTGTGGAAATCGAGTTTCCTGAACGTGACTGTGATGTCGAAGGGAACCCACGCTGGTTTATTTTTACACAGCCTATGGTTTTGACACAGTCGTAACAGTCAGTAGCGTGAACGTATGCGCTCGTGCTGCCGTGTGCTTGTAAATTAGTGAGCTGATCGCCATGATGCTCGAGAGGAGCAGGGTGACAGTGGTGGCGGATATCTTCTTCAGCAGGAGACTCTCACCTAAagttgaggaggaggagaaaatcCACTGTCTCTGCTCCATAGCCTTTGTGCAGGATCGGGAGCTGTATCGTTCTGATAATAGATTGCTCTCAACTGATCTGGGAGACAATGTAGTCCAAGAAgcagatgaggaagaggaggaagaaggggaggctgaggtggaggaagaggaggtgtTGGATGAAGAGACTCAGCTGATGGCCAGCATGGGTCTGCCTCTGGCCTTTGCCTGCTCCTCTGACACGAGGAGGGCGAGGAGGAGGTCTAACAGGAAGCCTGCCGCACGCTGGGCAGAGTCAgcggaagaggaggaggaagaggaagacgaTCTACAGGTTGACAACACAGTAGTTGAAGAGAAGGAAGCGTGTGATCGACCGGAGGATGGAACACATGAGACCCAAGCTGCTGGCTGGGAAACCTACTGGGCTCAACAGGGTGAAGCTCTGCTGTGGAGCAGCTGGCTGGAGAAACATCCAGAGACTGATCCAGGAGCAGCGGCGGCTCTTTGGGATGACCCAGACACAAAAGCTGCCTGGGACAAACATGCAGCCGAGACTTACTACTCCTACTGGGAGCAGTACTCGTATTGGTCAGCACAGGGCTGGACCACTGACCAGTCCGTCTGTGATGGAAACGCTGGTGGTGGagacgcagcagcagcagcagcaggggtgaTGGGCGCATGCATGGAGACGCACACAGAGGAATGGAGGAATGGACAGACTGGAGCTGAGAGCCAACAGACAGAAGAAGCAAAGGCTCTTCATGACGACGATGAGGTTTTGAATGATCTGTTTGGACAGAACTGCACATTAGAAGCAGCTGGGAGATCCAAATCCGAGATAGACagacagtgtgtgagtgtggctGATATGGATCACCCTTCTGATGGTGGGAATAGTAACAAGAGACCTGCTGCCTCTTCACAGGACAACACAGCTGAACAGACAGATTCCCAGCAGCGCTCCGGCAGCTCTAACAGACCGTACGGCTCGAGGAATAAGATGCCAAATAGAGaagatgatgacgatgatgacaAACCCCCAGAAGGAGGACATGCTAAAGTCAAACGCAGTCATGAGCTGGATGTGGAAGAGAGCCCACATCTGACACCTGAGGAAGCCTGGAGCAAACTGGGACTCAAACGCAACCCAGAGCCTCGGTTCGACAGCGTGTTAAGCTTCAAAGGCGGTGCTGGTCAGAAGCATCCGAAGCATCAGAAGCAACGGTGGGCTAAGAGAGCGGTCCGCAGCATCAGCAAACACATCAGGTTCCCAGAAACTTGTGGAGACGAGAACACACAGCCACGGATCAGCAGCTCCCTCACCAAGGTCAAAAACTTCCTTGAAAAGAactggagagagacacagatgaCTCCATGTAACCAGGGTGAGATGGGAGGAGGAAGCACACAGGAACCGGATGATAAGCCTCCATTTCTGAAAAAAGTAACGGGAGAAGAAAGGAAGACGAGCAGGGAGAATATGAAAAGTGCTGAGGAAGGAAATACAGAGGCTGTGGAAGAAGATGGTTCTAATTCTCTGTCCAGTTTAGATGCAGAGCAAACTCTCAACTCTGCTACTGGGACTGTGGATagtgagaggatggaggaggaggaggaggaggaggaggaggatcagCCCGGTAGACGGCTACCAAGTCTAGAAATTCCTGACTTTCTTATATCTGACACACCTGAAGGCAACAGTGagTTAAGCATGAAAAATGGAAAGAAGCCAAAGAATAAGAAGAGTAAACGAGCGAGGAAGCAGCCGGTCCCAGCAGAAATGACGGCTGAACCGGAGCTGGCTAAATACTGGGCTCAGCGCTACAGACTCTTCTCTCGCTTCGATGAAGGGATCCGGCTGGACCGAGagGGCTGGTTCTCTGTGACACCGGAGAGGATCGCTGAGCACATCGCCCTCAGGGTGGAGCACAGCTTCCCGGACTCTCAGCTGGTCATAGACGCCTTCTGTGGTGTGGGAGGAAACGCCATCCAGTTCGCCCTCACTGGAAAGAGagTCCTGGCCATTGATATCGACCCGGTGCGCTTGAACTTGGCACGGCACAATGCTATGGTTTACAGCGTCGCTGACCGAATCGACTTCCTTCAAGGGGACTTTCTTCAGCTTGCACCCCGTCTCCGTGGCAATGTGGTCTTCCTTTCACCACCATGGGGAGGGCCAGACTACCTGACTGCTGAAGTGTTTGACATCAAGACCATGATGCAGCCTGATGGATTTGAGATATTCCGCCTGGCCAAACTGATAACAGACAACATAGTGTACTTCCTGCCTCGCAATGCTGACATGGATCAGATAGCCTCTCTGGCTGGTCCAGGAGGGAAGGTGGAGGTGGAGCAGAACCTCCTCAACAACAAGCTGAAGACCGTGACTGCTTACTTTGGCAGCTTGATAAAGTCCGACAGCTAGTAACGCTGGCAAAGCCATGCATCGATGTGGATTTCTACCTCCGCTAAATGAGAATGGAAGACAAATTGTACTTTTCCTCTATTTCTCTAATTATACTAGAGAGTCCATTCAAGTACTAGAAAGTACAACAATTTTaccctacttttttt

Function

GO: NA

KEGG:

id description
K14292 TGS1; trimethylguanosine synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152206 lncRNA downstream 129370 8056602 ~ 8060033 (-) True G112903
TU152205 lncRNA downstream 143922 8044110 ~ 8045481 (-) True G112902
TU152161 lncRNA downstream 220069 7967433 ~ 7969334 (-) True G112876
TU152162 lncRNA downstream 223098 7964439 ~ 7966305 (-) True G112877
TU152172 lncRNA downstream 263211 7924102 ~ 7926192 (-) True G112887
TU152230 lncRNA upstream 7726 8210827 ~ 8211057 (-) True G112922
TU152232 lncRNA upstream 9019 8212120 ~ 8212771 (-) True G112924
TU152231 lncRNA upstream 12808 8215909 ~ 8219170 (-) True G112923
TU152301 lncRNA upstream 251390 8454491 ~ 8454705 (-) True G112980
TU152305 lncRNA upstream 294632 8497733 ~ 8497975 (-) True G112984
XM_039816994.1 mRNA downstream 1727 8178285 ~ 8187676 (-) True LOC120569115
XM_039815674.1 mRNA downstream 30615 8150224 ~ 8158788 (-) True LOC120568280
XM_039815671.1 mRNA downstream 42511 8140232 ~ 8146892 (-) True ccr12a
XM_039815672.1 mRNA downstream 42512 8140232 ~ 8146891 (-) False ccr12a
XM_039815670.1 mRNA downstream 52846 8103401 ~ 8136557 (-) True cntnap2b
XM_039815778.1 mRNA upstream 29173 8232274 ~ 8249635 (-) True xkr4
XM_039815779.1 mRNA upstream 54551 8257652 ~ 8283049 (-) False LOC120568351
XM_039815782.1 mRNA upstream 54551 8257652 ~ 8283032 (-) False LOC120568351
XM_039815783.1 mRNA upstream 54551 8257652 ~ 8283032 (-) False LOC120568351
XM_039815781.1 mRNA upstream 54551 8257652 ~ 8283032 (-) False LOC120568351
unassigned_transcript_534 other downstream 1961619 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 1962657 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 1968306 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 1968869 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_530 other downstream 1969449 6219873 ~ 6219954 (-) True trnas-uga_16
unassigned_transcript_537 other upstream 284366 8487467 ~ 8487539 (-) True trnak-uuu_16
TU152428 other upstream 577351 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 669333 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 670309 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 688830 8891931 ~ 8892004 (-) True trnan-guu_6

Expression Profile