RNA id: XM_039815653.1


Basic Information

Item Value
RNA id XM_039815653.1
length 4074
RNA type mRNA
GC content 0.51
exon number 31
gene id col6a2
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13081743 ~ 13096416 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTTGCTGGGGCTGGACCGGGACAGGAGAGCGAACGGACGGCTCTTCTGCGGGAAGTGAAAGCCCATCCAGAGCTTTGTTTCCCATTTTTCTAACTCCCGTATCTCCCTTTTCTTTCTCGGCTTTTACCTCCTGCTGATATGAGAAGATAAATCAACAGAGGATCAGCTGCTAACGAAGTTTTGAAGTTGTTGGAAAGAGTTCAGAcaggagaagaggaagatgtTGGGGTTAGAGGTCATCGTGCTCTGTCTTCTTTTTGGAGCCCTGACTCACGGCCAGCCAACACAGTGCAACAAGAAGAATGATTGTGCAGTAGACGTGTACTTCACCATAGACACATCTGAGACCATCGCCCTGCAGGAGCCACCCCCTGGAGCGCTGGTGGAGAGCATCAAGACATTCGCTGCGCTATTTGCAGAGCGTTTGGAAGATGCTGAACTTAAAGGTGTCGTGCGGATCAACTGGAACATCGGTGGACTGCACTTCTCCCAGATCCAGAAAGAGTTCAGTACCATCGGACCCAAGAACAATTTCATCACtGGCGTCAAGGCAATCCAATACCTGGGTAAGGGTACTCACACCGACTGCGCCATCAGCAACATGACCGAAAAAATGCTGCGCTTTCCCTCTACTACCAGCCCCGGTTTGGTCCGATTCGCTGTGGTCATCACCGACGGCCACGTTACTGCGAACCCATGCGGGGGCATCAAAATGGCAGCAGAGAGGGCTCGCGAAAAGGACATCCATATGTTTGTCGTGGCGGCATCAAGGAACATCGAAGAGACAGGGCTGAGGGAGATCGCCAACTCTCCTGCGAGCGTCTACAGGAGGGATTTCATGGCTGTGGATCTGAGCCAGGGCAGAGCCATCATACATGAAGACACCATTAACCGCATCATCGACACCATGAAACATTTGGCGTTTATACAGTGTTACAATGTGACCTGTCTGGAGACAACAGGGCCTGAAGGTCCAACAGGTCCCCGAGGACAAAAAGGAGCTAAAGGAGACAACGGCGACCCAGGTCTAAAAGGATTAAAAGGTCGCCCAGGAGACCCCGGTATCGAGGGTCCCATCGGTCAGCCCGGTAGCAAAGGACAACCAGGTGTACAAGGTGATAAGGGAGAGATTGGTACTCAGGGGAAAAAGGGCGTGGCTGGCGTTGAAGGGCGCAATGGTACAGATGGACAGAAGGGTAAAATTGGACGGATCGGCGCTCCCGGCTGCAAAGGAGACCCAGGCGACAGAGGTCCTGATGGTCACCCCGGAGACGTCGGTGAACGTGGTTTTGCTGGTACTAATGGAGAAAAGGGTGATCCCGGTCGCCCTGGAAGACCTGGTCCCTCTGGCCTGTCTGGAGAGACTGGACCAAAGggagagaggggaagtcCTGGATCACCTGGCGTCCCTGGACTGAAAGGAAACCcaGGAACCCCTGGAGATCCAGGAGTCAGAGGAGAACCGGGGAGAAGAGGAGACTATGGGCCAAAGGGTGCTCAAGGGTCAGATGGAGTTAAGGGAGACAAGGGTGAAATGGGGCCAGAAGGCTTGAGAGGACTTCCAGGTGAATCCGGAAACAAAGGAACAAAGGGAGACAATGGCCTGCCAGGCCCCAGGGGACCACCGGGGACACCAGGAGAGGCTGGGAAAAATGGTACCAGAGGTGACCCTGGTGATGCTGGACCAAGAGGCGATCCTGGACAGATTGGACCAAAGGGAGACCCTGGAAGACCTGGTTTCAGCTATCCTGGGCCTAGAGGATCATCGggtgagagaggagagaatggCAATCGTGGACCTCGCGGTGGCAGAGGAGACTGTGGTCCAAAGGGTGAACCAGGAGTTAAAGGACCTTTGGGAGAGGACGGTGAGCCAGGATCTCAGGGTGAACCTGGCCTAAGAGGGCCAAGAGGAGAGCTTGGGCGTGATGGAGATCCTGGCCCTGAGGGAGATCCCGGCCTCACTgAATGTGATGTTATGAACTACATCAGGGAAACATGTGGCTGCTGTGATTGTGAGAAACAATGCGGAGCCCTGGACATTGTGTTTGTGATCGACAGCTCCGAGTCAGTGGGTATGACCAACTTCACCCTGGAGAAGAACTTTGTCATCAACACCATCAACAAACTGGGATCCCTTGCCAAAGACCCTAATTCAGACACAGGTTGACATGCACATGTTCCCTTGCTTTTTAGATGACTACAGAATTAGTCCAAAAAACTTTACAAGATGGCTGCTTTTCAGGATGCAGTGAAGCGCTTGGAGTGGATTGCTGGAGGAACATGGACTCCATCAGCTCTGAAGTACGCCTATGACAACCTGATTAGGGACAGCCGCAGAGCCAAAGCCAAAGTCACTGTTGTTGTCATCACTGACGGACGCTTCGACCCCAGAGATGACGACCAGCTGCTCGACTACCTCTGCAGacAAACTACCCCTGTTGATGTGAGTGCCATCGGAATCGGAGACATGTTCGACCAGATTGAGGAGAATGAGAGTCTGAAGAGCATTGCCTGCCAGAAAGATGGCAGGGTGCTGGGCATGAAGCGCTTTGCAGACCTCGTGGCAGAAGAGTTCATCAACAAGATTGAAACCGTGCTCTGCCCAGAGCCTTTCATCATATGCCCTGATCTCCCCTGTAAATCAGAGCCTGCCGTGGCTAGCTGTGTTCAGCGACCAGTGGATGTGGTGTTCATGTTGGATGGTTCTGAGAGGATGGGACTGGAGTCCCACCGCAGGGCCAAAGAGTTTATCGAGAACGTAGCTCGCCAGCTCACCCTTGCCAACAGCCGTTCAGACGAGAGGAATGCCCGCTTGGCTCTGCTGCAGTACGGCAGCCCTTCAGAACAGAGGGTGGAGTTTGCACTCACTCACAATCTTACAGTGATCTCTGATTCGCTGGCAAGGGTGACCTACATGGACTCGTCTTCTGCTCTGGGCAGCGCCATCATCCATGCTGTCAACAATCTGGTGGTTCCAAAGCAGGGTGAACGCTTGGCTCGTCGCAACGCTGAGCTGGCCTTTGTGTTCATCACTGATGGCATCACAGCCAGTGAGCAGCTGGATGAGGGCTTGTCTGCTATGAAGCGAGCGGAAGGCGTTCCCACGGTCATCGCCATGGGAACAGACACAGATGAAGAGGTGCTGCGGAAGGTGTCGCTTGGGGACATGTCTGCCGTCTTTAGAGGAGCTGACTACAGCATGCTGAACAAACCCTCATTCTTTGAGCGCTTTATCCGCTGGATATGCTAGTGAGGAACTGTAACTCTCTCCATACAATTAGAACCCATTTAAAGAAGGGCCAGCTCCTTCAGCGTacacgtaaacacacacagagccatcaGCAAACCTCTGTGATCATTTATAACTGGATGTAAGGCACTGAGGCGGCTACATATCCTGTTGTTATGGGTGAAGATTAATTTACAGAAGCCAATACAATGTAGGACCAgttgcacactcacacaaacacatttgtaaCTTGATTGTTATATTAATTCTAAATTGGTCAGCCCTTCCAACTAAAGACACTCAAAAGTATCCCAGAGAAGGGTGAATGAATGTGTACGAAACTAATTGTACGctttattttggttttattttgtatcgaatttcagtttgcagtgtgtcgctctctctttcacacacacaccacacacacacacacacacacacacacacacacacacacacacacagtctgtctTCACAAAGTCAGTATTTACTTTAACGGTGCTAAAGTAGAGATAAAGGACAAAGCCATGCCAGTGGttctgaaaacttttttttacatcatgTTATGCTGTAATTACTGTAGTTTGTTTCAGGGGGGAATCATGTAGACATATCTTCTTCAGGGGGAAATAGAATCTCACATTACGGTAATGTCCTACACTCAGCCACATAAGaatcacacacaggcacacacatatgCTGTAGTTATTTACACATGATttgacagacaaacataaaagaaCCAAATCTGTAAACATGAATTCCAAATAAACCATTATGTGGTTACCCCAGCACTGTCTTTTATGTTTGCAagatatataaatgtgtgaTGTGTTA

Function

GO: NA

KEGG:

id description
K06238 COL6A; collagen type VI alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153756 lncRNA upstream 7149 13010575 ~ 13074594 (+) False col6a1
TU153760 lncRNA upstream 53573 13027079 ~ 13028170 (+) True G114000
TU153732 lncRNA upstream 167522 12913617 ~ 12914221 (+) False LOC120567760
TU153729 lncRNA upstream 174631 12906596 ~ 12907112 (+) False LOC120568152
TU153701 lncRNA upstream 207433 12861625 ~ 12874310 (+) True G113956
TU153769 lncRNA downstream 55683 13152099 ~ 13153594 (+) True G114008
TU153788 lncRNA downstream 86923 13183339 ~ 13186363 (+) False si:ch73-71c20.5
TU153799 lncRNA downstream 99845 13196261 ~ 13198734 (+) True G114033
TU153802 lncRNA downstream 103352 13199768 ~ 13200746 (+) True G114035
TU153804 lncRNA downstream 108409 13204825 ~ 13207023 (+) True G114037
XM_039815651.1 mRNA upstream 7174 13047908 ~ 13074569 (+) True col6a1
XM_039815019.1 mRNA upstream 36052 13038890 ~ 13045691 (+) True LOC120567921
XM_039815020.1 mRNA upstream 43931 13033439 ~ 13037812 (+) False LOC120567922
XM_039815021.1 mRNA upstream 43931 13034049 ~ 13037812 (+) True LOC120567922
XM_039815018.1 mRNA upstream 55812 12979093 ~ 13025931 (+) False LOC120567919
XM_039815654.1 mRNA downstream 4986 13101402 ~ 13105801 (+) True zgc:162816
XM_039815655.1 mRNA downstream 10283 13106699 ~ 13112264 (+) True orc2
XM_039815656.1 mRNA downstream 10283 13106699 ~ 13112264 (+) False orc2
XM_039815661.1 mRNA downstream 18180 13114596 ~ 13117351 (+) True rpl37a
XM_039815659.1 mRNA downstream 22153 13118569 ~ 13122673 (+) True pecr
TU153727 other upstream 106106 12929215 ~ 12975637 (+) True G113979
TU153737 other upstream 124387 12952580 ~ 12957356 (+) False LOC120569010
TU153451 other upstream 494580 12582642 ~ 12587163 (+) False ap1g2
TU153339 other upstream 921488 12157451 ~ 12160255 (+) False LOC120568189
TU153340 other upstream 921488 12157516 ~ 12160255 (+) False LOC120568189
TU153768 other downstream 18233 13114649 ~ 13117356 (+) False rpl37a
TU153770 other downstream 26639 13123055 ~ 13125463 (+) False ndufb3
unassigned_transcript_558 other downstream 121723 13218139 ~ 13218210 (+) True trnae-cuc_17
TU154336 other downstream 1190734 14287150 ~ 14295268 (+) False LOC120568245
TU154337 other downstream 1191939 14288355 ~ 14290960 (+) False LOC120568245

Expression Profile