RNA id: XM_039815656.1


Basic Information

Item Value
RNA id XM_039815656.1
length 2121
RNA type mRNA
GC content 0.48
exon number 16
gene id orc2
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13106699 ~ 13112264 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTTGCTTGTCATGTGGTTTAAAAACTTCAGGAGGATGGCGCGGAAAGTTGTCACGCCACACAGCGTAGCTCTCAGTTTATGAaagttttgtttacattttcttCGGGCGGTACTGACTCGTTATCTGTCATCATGAGTGTGTTGGAGGTGAAGTTCATTGGTGATGGAGATGCTCTGGAGCATATCGTGGACAAACCGGAGGGTGTGCAGAGCAACAGTGGGTCTGTTCAGAAGATGGTAACGTTTAAAAGCCAAGCTGGACGACGGACCATAGTGGATGCAGAACATGATGGGGACGAAAATGAAGTCCTTGATGAGCAGAACTATGTCCAAGCTTTAGGAACAGACAATGCAGAAGACGAGGAGGGTATGTACAGAATGGCTGGATCCTCCATTTTCACCTTTCAGAAAGGCAAACGTGGACACAGCATGGCCCAGACTGCAAGTGAGTTGGCTCGGACTCCTGGGAAAAGCGTGACCTTCAGCACAACCCCCAACATTGAACCCTCGACTCCCACCCGAACATGCCGCAACCACAGAGGGGAAAGCAGGACACCTCAGAGGAGCAAGAAGGTTCAGTTTGTCTCCACAACACCCCACAGGCTCAGGAAGAGAATGACAAcTCCGAGCATCCGATCAGACAGCGATAGCGAGCTGTCGCCCTCTGACTCtggggaagaggaggatgaagatgggATAGAGGAAGAGCAGAAAGTAAAGAAAGAAGACCAGGAGAACTTGAAGACTCTAAGAACACCCAGTAAAGGTTCATCTGCAGCTCTCTACAAGACTCCTGCCAAGAAGAGCAAGACCGCTTCTGAAGTACCCAATCAGCCCAGTATGATTGAGGAGTATTTTGAAGCCCATGGCAGTTCAAAGGTCTTGACATCAGACCGCACGCTAGAGCGTTTACACACACCTAAACTTGACAGGgaGACGTTGGTCCAGCTTTTAGAAGGAAAGCTGTCCTGCTGCTCCAAAGAGATCCAGCAGCTCCACAACAAACACCGAAAGCACTTTAGCAAATGGatgttacagttacaGTTGGGATTCAGTGTGCTGGTCTACGGTTTGGGCAGCAAAAAATCTCTGCTGGAAGACTTCCGTGTATCTCACTTGGCTCAGGAAATCCACCTCGTGGTCAATGGATTCTTCCCTTCCATTACTCTTAAATCAATCCTAAATGCTTTGACGTGCGAGGTTTTAGAGCACCAGGGAAGTTTCCGGACCCCCTCAGACCAGATCCAGTACATCGCTCAGACTCTCAAAGACAGCCCAGATCTCCATGTATACCTGCTAATCCATAATATCGACGGACCAATGCTGCGAGGAGAGAAGACCCAGAGTGCACTGGGGCAGCTGGCATCCCTGCCCAACCTGCACTTGGTGGCTTCTTTAGACCACATTAACGCTCCACTGGtgTGGGACCAGTTTAAGCAGAGCCAGTTTAACTGGTTGTGGTGGGAGTGTGTGACCTTTCAGCACTACGCAGAGGAAACGTCATATGAAAACTCGCTCCTGGTGCAGCAGACTGGCGCTCTCGCTCTGTCCTCCCTTACACACGTGCTACGCAGCTTGACACCCAATGCAAGAGGAATTTTCAAACTGTTGGTGAAATTCCAGCTGGAAAACAAAGATAACCCTTcatacacagGATTGTCATTCCAAGATTTCTACCAGCGTTGTCGCGAGGCGTTCTTGGTGAACTCTGACCTCACACTGAGGACCCAGCTGACCGAGTTCAGAGACCACAAACTGATACGGACACGCAAGGGTGCAGATGGTGTGGAGTACTTAATTGTTGCCGTGGATGCAAGCACGTTGATGGATTTCCTGGAGAACGAAGAGGGTGACTGAGCGGAGAAGACTTTAGACTTGTCTCACTTATACTTCATCCACTGACTTTACCAGAAAATGGATATTTTGGTTGAATCGGTCACTGATATAAAGGCCCATGAGCTTAGCTTTCAGGCTCTACAGTTTAAATGAATGGCTTGAATCTAATTATTGGTGAATTGTTTCACTTCACGAAATGCCCCATTATAGCTCTTCACATCTTGTGTGTTTTGATGCATCACGTTTTCAGCTAACATCTGTAATTAAATTCCACACATAAGGA

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0000808 origin recognition complex cellular_component
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153756 lncRNA upstream 32105 13010575 ~ 13074594 (+) False col6a1
TU153760 lncRNA upstream 78529 13027079 ~ 13028170 (+) True G114000
TU153732 lncRNA upstream 192478 12913617 ~ 12914221 (+) False LOC120567760
TU153729 lncRNA upstream 199587 12906596 ~ 12907112 (+) False LOC120568152
TU153701 lncRNA upstream 232389 12861625 ~ 12874310 (+) True G113956
TU153769 lncRNA downstream 39835 13152099 ~ 13153594 (+) True G114008
TU153788 lncRNA downstream 71075 13183339 ~ 13186363 (+) False si:ch73-71c20.5
TU153799 lncRNA downstream 83997 13196261 ~ 13198734 (+) True G114033
TU153802 lncRNA downstream 87504 13199768 ~ 13200746 (+) True G114035
TU153804 lncRNA downstream 92561 13204825 ~ 13207023 (+) True G114037
XM_039815654.1 mRNA upstream 898 13101402 ~ 13105801 (+) True zgc:162816
XM_039815653.1 mRNA upstream 10283 13081743 ~ 13096416 (+) True col6a2
XM_039815651.1 mRNA upstream 32130 13047908 ~ 13074569 (+) True col6a1
XM_039815019.1 mRNA upstream 61008 13038890 ~ 13045691 (+) True LOC120567921
XM_039815021.1 mRNA upstream 68887 13034049 ~ 13037812 (+) True LOC120567922
XM_039815661.1 mRNA downstream 2332 13114596 ~ 13117351 (+) True rpl37a
XM_039815659.1 mRNA downstream 6305 13118569 ~ 13122673 (+) True pecr
XM_039815662.1 mRNA downstream 10766 13123030 ~ 13125463 (+) True ndufb3
XM_039817023.1 mRNA downstream 46752 13159016 ~ 13163518 (+) True si:ch211-227n13.3
XM_039817024.1 mRNA downstream 51575 13163839 ~ 13166831 (+) True LOC120569132
TU153727 other upstream 131062 12929215 ~ 12975637 (+) True G113979
TU153737 other upstream 149343 12952580 ~ 12957356 (+) False LOC120569010
TU153451 other upstream 519536 12582642 ~ 12587163 (+) False ap1g2
TU153339 other upstream 946444 12157451 ~ 12160255 (+) False LOC120568189
TU153340 other upstream 946444 12157516 ~ 12160255 (+) False LOC120568189
TU153768 other downstream 2385 13114649 ~ 13117356 (+) False rpl37a
TU153770 other downstream 10791 13123055 ~ 13125463 (+) False ndufb3
unassigned_transcript_558 other downstream 105875 13218139 ~ 13218210 (+) True trnae-cuc_17
TU154336 other downstream 1174886 14287150 ~ 14295268 (+) False LOC120568245
TU154337 other downstream 1176091 14288355 ~ 14290960 (+) False LOC120568245

Expression Profile