RNA id: XM_039815664.1


Basic Information

Item Value
RNA id XM_039815664.1
length 4366
RNA type mRNA
GC content 0.53
exon number 12
gene id slc39a6
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 4145863 ~ 4168656 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTCCCAATCCTATATGCAAATTGTGACTCTGCATTTCCCTCCTTTTGCACTCTTTGGTTTTAGCAACTCAGATTTCCGGGAGCCCCTGAAGGCGGCGCAGCCACATCCTTCATTTACCGGACCGGAGAGACACGAGCGGCGCCGTGAAGTCTTCACACACCAACCGGAGCGGATAACACACAGCGCTTACATTCACCAGATGATGTTGATGTTGCTGTTGCTCCTCGCCGGGAGTTGGTCCGGCGGCGACGGTTCGGACTGCGGCCCCGTCACCACGGAGACCAACAGCGCGGCGCGTTTACTGTCGGCCGTGGTGGACACGCAGAGAGCCGAGCAGAGCCAGAGGCAACACCTGGAGGCCCTGTTCAACAGATATGGAGAAAACGGCACCATCTCTCTGGCCGGTTTAAAGCGCCTGTTACAGAACGTGGGTCTGGATCGCATCAGGACTGTTACGGTGCAACATCACGAAGAACCAGGCCACCACgatcaccaccaccatcatcaccaTAACCACGATCACCACGATCACCAccatcacaacaacaacaacaactcccAGAGGCACGCTGAACCCTCTCAGCCCAGAAAGCTTCCAGAAACGTCTAGAGTGTCTATAGACCAGGACAGCCGCCACATCCCGCACAGTAAGCGGAccgcggcggcggcggcggctgAGGGCACGGGCACCACAGCGGTGTACAGCGGCCAGCTGGTGGTTGAACCAGACGTAGCGCGTAAGGGACAAAACGGAAGCCCGGAACAACGCAGTCCTGCAGCGGAGGAGACTACTGCCGGGCTGACAGTCACCGAAAGCCAGACAATGGCGGTTGCAGTCACCCGGGGCGACCACGACCATGAACACGACCATGAACACGACCATGACCATGAACACGACCATGATCACGAACACGGTCATGGTCACAACCACAAGCGAAGCGTGGACAGCGCGGAGTGTCTGAACGCCTCCACCATCCTGTCGTCACACGGGATGTTTCAGGGCGTGGACGTGACCCTCGCCGACTTCAGTTTCCTCTGCCCCGCCCTCCTCAACCAGATCGACGGCGGAGCGTGCATCCTGCACGGAGGCGCCGCAGATGACGCGCAGACGGaCCATAAACACAGTCACGGCGACCACAACAACTCGGAGCCCGGCCACAGGGAGAGCCCTGCtggagaaagtgacaaaaacattgcaaTAGCGTGGGTGGGAGGCTTCGTCTCAATCACCATCATCAGCCTGCTCTCCCTGCTCGGCGTCGTCCTCATCCCGCTCATGAACCGAGTTTTCTTCAAGTTCCTCCTCAGCTTCTTGGTCGCGCTGGCCGTCGGCACGCTGAGCGGCGACGCCTTCCTTCATCTCATCCCCCACTCTCAGGGAggccaccatcaccaccacaagGATGAAACGGGGCTGGGCGTGGAGGGACATCACCTCCACGATGAGCAGGAGGAGAACCTGGACGCGGTGTGGAAGGGTCTGACGGCTCTGAGCGGGGTCTACATCATGTTCCTCATCGAACACTTCCTCACACTGGGCAAAATGTACAAGGACAAgaaacaaaagATCCAGAAGCAGTGGGATCAGAACGACAAAGCAGATCCAGAGAAGCAGCCAGCTCTGGAAGAGGGCGACCTGAAGCCATCTGAAGACGTGGAGACTAATGGCGCGGGTATTTTTGGCGACCACTCCATCAACCTGCACGGCGGCAGCGTGGCGGAGGAGGAGCAGGTGATGCTGGCGCCCCAGTTGTCGGCCGCCCCCTCGCCGCAGGGGTCTGCCGCCTACACCGCCGAGGACTGCGAGAACAAGTGCCACTCCCACTTCCACGACACGGTGGGCCAGACGGACAGCATGCACCACCATCACCACGACTACCACCACATCCTGCACCACCACCACTCCCAGAACCACCACCCCCACAGCCACTCCCACTCCTACTCGGAGGAGCACTTCCAGCAGGCCGGCGTGGCCACGCTCGCCTGGATGGTCATCATGGGGGACGGGCTGCACAACTTCAGCGACGGCCTGGCCATCGGCGCTGCCTTCACTGAGGGGCTGTCCAGCGGTCTCAGCACGTCTGTGGCCGTTTTCTGTCACGAGCTGCCGCACGAGTTGGGTGACTTTGCGGTGCTCCTGAAGGCCGGTATGACGGTGCGCCAGGCCATCCTCTACAACGTGCTGTCGGCCATGATGGCGTACCTGGGAGTGGTGATCGGCATCGTGATCGGACACTACGCCGAGAACATCTGCATGTGGATCTTCGCCCTCACGGCCGGCCTCTTCATGTACGTGGCTCTGGTGGACATGGTGCCGGAGATGTTGCATAACGACGCCGGGGACCACGGCTTCAGCCACTGCGGCTTCTTCCTGCTGCAGAACGCCGGCATCCTGCTGGGCTTCTGCATCATGCTGCTAATCGCCATTTTCGAGCACAAAATCCAGCTGGACCTGGGCTACTGAGGGACGGCGTTTGGTCCTGAGCTCCGTGTGCGTCTCAGTGTCTCCGTCAGAAGTGTACTGTgtctatttttatttgttgttgttgtagacTGTCCCGTCGCCTTGATTTAGTTTCTATTGTCCACACGGTGTAGGGAGAAGTAGAAACGCAGAAATCGAATGTTGTCGTAGCGGAAGCAGAAGTTAAAAAGCTGCAGCGGCTCTGACGTTTGCCGCTCAAACTCATTAGgagtaaaaaataataactgaagaagttgttttttcattttcttagaCTGCGGTTACAAACGTGCAGTAATTTCTCTTTTTGTCAAAAAACTCATGAAgtcagagaagagaaaaagaaataaaaagtccCCCGTCCAAATTGCTCTTTCCACAAAAATGCTCATTTGATGAATATTTCACTTTTTAGCAGTTCCTATTAACAATAAACTCAAAAAGACCCTCTCATGGGGTTATCTGTCCCTTAAAATTTTTTGCCatcatatttgatttgattcttTACCCCATTATGTCTGATTTCTGATGTGTTGGAAGTGTTTCTGCTGCTGAGTCAAACCACATCAGTATTTCAAATAATCCCCTAAAGTACCGTAACAGCTCCACTGTTAGAAacactagcctggctccgccctcctacgtacttctgctcaattttcatttcccttcagtactctgTCTGGGTTTatggtatattcttgggttttctccggccaaatctttaccggtccaatcagagAACAGAGGGAGGGGCTGAGAACGgtgacgttgaggtcgtgctctagtttgagttgtacttccttaatggcggcggagaaagatgcgagcgaagccattcggtccgttgtggcaacgctgccgaatatccagaagttaaagcccgagcaagaacaatctttgctgagttgtgttggtggccgtgATGTTGGTGCCCTCCTCCCCTAAAAaagaaatggaccagagtctggtcctaccaggctaatgtaccagagtctggtcctaccaggctagtggaccagagtctggtaggaccaggctaagaCAACACCGCACTGGGAAACCATTCCCATTTTAAATCCCCTCCTATGAGAACTTAAAGTAGTGTCCACTATACACCCCAATCTCTTTCAGAATAATCTCTGCAGGCGATATTATCCCAATTCACGCTGCGACTATCGATCATTTCACATCTGATTAATCTGGAGCTTTACATTTTCCTCAGAAGTGATCTTCTCTTCTGTGAAGCTTTTTGATTTGGGATCATGCAGCGGCACTTTGTAGTGTTAAATTATCCAAAAACAACACTAGATACATTTTAATTAGCATTTTAGGCACCGCTTGAACCGAACTGAACCCTAAACTGTGACCTCTGTTCATGTGGAGCTGAACAATCTACATTCATTTCTGCCAATTTTcagattttagttttttcctttttgttgtttgttacaTTTTTGAAGGCCATGTCATGTGTACCAGAATTCTTTAGTTTCAATGCCTTTACTTTTGAGGCTGCCTGTTACTGTAGCTTTAAGCTTTACTTTAAGGATTTCAAACTAAGCTGTCAAACTATTTGTTTTAGTCCAACGCCTGCAGACGTCTTGATTCTGTTAGTTAATAAAGTGGCGGCATGGATCCGTTTTCTTGTCTTTAAACGAGTGCAAAGCTCTAAATGTCTCCtaggtagggttgggtaccgaaacccggggCCTAAACAACCGGTATCTACCGAATGGaaacgcagatttcggtgcctcatttttGTGCCGCTTAAATGCcttctgcgctgctctctgatgctccgaaacagacgtttgaggcaacagaagcatcgctgcatgtcacactagttaacacttcacctgacagcaggtagcgttagcctaccgttagctag

Function

GO: NA

KEGG:

id description
K14712 SLC39A6, LIV1, ZIP6; solute carrier family 39 (zinc transporter), member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151023 lncRNA downstream 4943 4092565 ~ 4140920 (-) True G112019
TU151022 lncRNA downstream 6932 4090508 ~ 4138931 (-) True G112018
TU151015 lncRNA downstream 17491 4107443 ~ 4128372 (-) True G112012
TU151010 lncRNA downstream 44995 4100174 ~ 4100868 (-) True G112009
XR_005640616.1 lncRNA downstream 63781 4074729 ~ 4082082 (-) False LOC120567799
TU151049 lncRNA upstream 69446 4238102 ~ 4238670 (-) False G112043
TU151051 lncRNA upstream 69446 4238102 ~ 4238670 (-) False G112043
TU151052 lncRNA upstream 69446 4238102 ~ 4238670 (-) False G112043
TU151053 lncRNA upstream 69446 4238102 ~ 4238670 (-) False G112043
TU151060 lncRNA upstream 119123 4287779 ~ 4288307 (-) True G112048
XM_039815667.1 mRNA downstream 24512 4110746 ~ 4121351 (-) True si:ch73-170d6.2
XM_039814702.1 mRNA downstream 118277 4021167 ~ 4027586 (-) True cldn15la
XM_039816388.1 mRNA downstream 127601 4001441 ~ 4018262 (-) True saga
XM_039816390.1 mRNA downstream 127601 4002141 ~ 4018262 (-) False saga
XM_039817021.1 mRNA downstream 161868 3972332 ~ 3983995 (-) False proca
XM_039814907.1 mRNA upstream 318672 4487328 ~ 4499789 (-) False LOC120567835
XM_039814906.1 mRNA upstream 318672 4487328 ~ 4499789 (-) False LOC120567835
XM_039814905.1 mRNA upstream 318672 4487328 ~ 4499788 (-) True LOC120567835
XM_039814909.1 mRNA upstream 337066 4505722 ~ 4510614 (-) True LOC120567837
XM_039814908.1 mRNA upstream 337652 4506308 ~ 4510611 (-) False LOC120567837
TU150904 other downstream 108900 4035542 ~ 4036963 (-) True G111942
TU150514 other downstream 775924 3314646 ~ 3369939 (-) True LOC120568520
XR_005640646.1 other downstream 916716 3204287 ~ 3229147 (-) False LOC120568005
TU150424 other downstream 1003993 2985332 ~ 3141870 (-) False LOC120568519
TU151047 other upstream 69446 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 69446 4238102 ~ 4238670 (-) False G112043
TU151050 other upstream 69446 4238102 ~ 4238670 (-) False G112043
TU151054 other upstream 69446 4238102 ~ 4238670 (-) False G112043
TU151058 other upstream 98882 4267538 ~ 4284083 (-) True G112046

Expression Profile