RNA id: XM_039815672.1


Basic Information

Item Value
RNA id XM_039815672.1
length 1992
RNA type mRNA
GC content 0.48
exon number 2
gene id ccr12a
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8140232 ~ 8146892 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aactgggcTAACCGGCAAccacagtgtcatgtcactcttatgtagaaaacttcaagtaaagtctAACTGAATAATATTATCTGATTTCCACATAAAccacgcacgcactcacacgCAAAAATCAACTTTTTCCCAATTGGGGACATGGCTTTTTGTCCCCAAATGGACAAGCTGTCCCCAATAACTGATCCTTAGTCTGAAATGTGTCCCATAAGGTAGCCTAaatcaggaacacacacacacacacacacacaaaaacatttcctGGAGACCTAACCTAGCCATAACATGCACCATTAATTGGTCTTTAGTCTGAAATGTGTCCCAGAAGGTAGCCTAAAtcacgcgtgcacacacacacacacacacacacaacacacacacacacacacacacacaagcacacaaacacatttcctGGAGAcctaccctaaccataacaatCCAAAAATCAACTTTTTTCCCAATTGGGGACATGGGTTTTTGTCCCCAATTGGACAAGCTGTCCCCCATTAACTGCTCTTTAGTCTGAAATGTGTCCCATAAGGTAGCCTAaatcaggaacacacacacacacacacacacacacaaactcacagacactaaaacaacaacacattagTGTGTTGTAGGACAGCCCCTTTAGCAGATGCCTCTCTTTGTCACCTAAACTCTTGAGCTCAGTGAGCTGCATTGATCACTCCAGAGACGCTCGGGGCTTCCTTGTGTTCCTCATTGTCCTCCTCTCACTGCGCTCCTGCAAATCTGCACTGATCAAACCCCAGCCATGAGCTACGATGATTCATATCTGCTCTTCAAGGACCTATTCGGTTACGGTGAAGCCAATGACACGACTGACCCAAATTATGTGATCACCGGAACTGTCCAGCTCTGTGCTAAGGATAAAGTCAACAAGTTTGGTGCAGCATTCATCCCAATGTTCTACTACTCCAACTTCATCTTGAGTTTCCTTGGCAATGGGCTcgtcctcttcatcatctacaagTATGAGAAGCTCAGTACAGTGACAAACATCTTCCTCCTGAATTTGGTCCTCTCCAACCTTCTCTTTGCCTCCAGTCTCCCCTTCTGGGCGACGTACCATCTGTCTGAGTGGATTTTTGGCATGGCTCTGTGTAAGCTGGTCAGCAGTGCCTACTTCATCGGCTTTTACAGCTCCATCCTCTTCCTCACGCTCATGACATTTGACCGATACCTCGCGGTGGTGCATGCAGTGGCAGCTGCTAAAAGCAGGAAGAAGGCGTATGCCATCGCTGCGTCAGTGGCAGTTTGGTGCATCAGTATTGTAGCGAGTGTGAAAGAGCTGGTTCTCCAAAATGTGCGGCAGACTCCGTTAAATGGAATCGTATGTGAGGAGTCAGGATACGCTGAGAGCACTATGGAGCACTGGCGTCTGGTCACTTATTACCAACAATTCCTGGTCTTCTTCATTCTCCCGCTGTTCATGGTGATGTACTGCTACATCAGCATCACTGTCCGCATCATGTCCACCCGCATGAAGGAGAAGTGCCGCGCCATCAAGCTCATATTTATTATCATCTTCACCTTCTTCGCCTGCTGGACGCCCTACAATATTGTCATCCTCCTTCGAGCTATTACCATCTCCAATGAGGGTGAAAATTTGTGTTCTGACGCAGAGAGCTTGGACTATGCCCTGTACGTGACCCGGAATGTAGCCTATTTGTATTGTTGCATtagtcctgtgttttacacatttgtgGGCAAGAAGTTCCAGAGCCACTTTAGAAGGCTGTTGGCCAAGAGGATCCCCTgtctgaagagacacatgagcCTCAGCAGCCAGAGCACCAGAACCACGTCACAGAGGACACCACACTCTGCTTATGAGTACTAGAcaggcatgcacgcacgcacgtacgccgcgcgcacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152206 lncRNA downstream 80199 8056602 ~ 8060033 (-) True G112903
TU152205 lncRNA downstream 94751 8044110 ~ 8045481 (-) True G112902
TU152161 lncRNA downstream 170898 7967433 ~ 7969334 (-) True G112876
TU152162 lncRNA downstream 173927 7964439 ~ 7966305 (-) True G112877
TU152172 lncRNA downstream 214040 7924102 ~ 7926192 (-) True G112887
TU152230 lncRNA upstream 63936 8210827 ~ 8211057 (-) True G112922
TU152232 lncRNA upstream 65229 8212120 ~ 8212771 (-) True G112924
TU152231 lncRNA upstream 69018 8215909 ~ 8219170 (-) True G112923
TU152301 lncRNA upstream 307600 8454491 ~ 8454705 (-) True G112980
TU152305 lncRNA upstream 350842 8497733 ~ 8497975 (-) True G112984
XM_039815670.1 mRNA downstream 3675 8103401 ~ 8136557 (-) True cntnap2b
XM_039814514.1 mRNA downstream 54306 8079296 ~ 8085926 (-) True LOC120567605
XM_039817008.1 mRNA downstream 72783 8063083 ~ 8067449 (-) True tmem70
XM_039815391.1 mRNA downstream 117326 7971949 ~ 8022906 (-) True LOC120568123
XM_039816546.1 mRNA downstream 179165 7952012 ~ 7961067 (-) True ttpa
XM_039815674.1 mRNA upstream 3333 8150224 ~ 8158788 (-) True LOC120568280
XM_039816994.1 mRNA upstream 31394 8178285 ~ 8187676 (-) True LOC120569115
XM_039815638.1 mRNA upstream 42512 8189403 ~ 8203101 (-) True tgs1
XM_039815778.1 mRNA upstream 85383 8232274 ~ 8249635 (-) True xkr4
XM_039815779.1 mRNA upstream 110761 8257652 ~ 8283049 (-) False LOC120568351
unassigned_transcript_534 other downstream 1912448 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 1913486 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 1919135 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 1919698 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_530 other downstream 1920278 6219873 ~ 6219954 (-) True trnas-uga_16
unassigned_transcript_537 other upstream 340576 8487467 ~ 8487539 (-) True trnak-uuu_16
TU152428 other upstream 633561 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 725543 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 726519 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 745040 8891931 ~ 8892004 (-) True trnan-guu_6

Expression Profile