RNA id: XM_039815685.1


Basic Information

Item Value
RNA id XM_039815685.1
length 3010
RNA type mRNA
GC content 0.50
exon number 23
gene id LOC120568287
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18151116 ~ 18170489 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAACCAGGGCCCCTCCGATCGGTCGCCGCTCGTGCCCGCTCGATTAAGGGACGTTTGCGCACTCCCGAGACACCAGGAAATATGGCGGCGCTCATGACTCTGAGTCAGTTATCAAGTGGAAACCCAGCCTATGACAGTTATTACAGACAGCTGGACCCAGGAAACACAGGCAAAATATCGGCTGGAGATGCAGCTCAGTTCCTTAAGAAGTCAGGGCTGTCAGATAGTACATTGGGGAAGatttgggATTTGGCAGATTCAGAAGGAAAAGGCTATTTGGACAGACGGGGTTTCTTCATTGCTCTGAGACTTGTGGCCTCAGCACAGGGTGGAAATGATATCAGCCTTAACAACCTCAACCAAAACTTAGCTGCTCCCAAATTTAAAGACACTAACAGCCCATTATTAAGTGTTTCAACGACAGGACCTGACTCCCAGTGGGCAATTAGGtCTGATGAAAAAGGGAAGTTTGAGGGCATTTTTGAGAGTCTGTCCCCTGTGAATGGTCTCCTCTCCGGTGATAAAGTCAGGCCAGTTTTGATAAACTCCAAACTACCTCTGGATGCGTTAGGAAAGATTTGGGACCTAAGTGATGTGGACAAAGATGGACACTTGGACAAAGATGAATTCACAGTGGCCTTGCATCTTGTGTATCGCGCCATGGAGAAGGAGCCTGTCCCAACTACCTTACCCGCTTCCCTCATCCCCCCATCTAAAAGGAAGAAGTCTGCAGGAACCCTGCCAGGTGCTGTGGCTGTGCTGCCTACTCTGTCTGGGCTTATGGCTGGCCCAGCCCCTCTAAAAGAATCCCTGCGAAGCACTCCTCCTCTGGCCAGTGCTACTCCCTTCAGCAGCAGTACTGTCAACCTCTCTCCTAAACACTCCTTTAAATCCAGCTCACCGCCAGTGGTGAACTGGGTGGTACCGGTGGCTGACAGAGAGCACTATGATGAGATCTTCAAGAAAACAGACAGCGACAATGACGGCCTTGTTAATGGAACTGAGGTCATAGAGATCTTCATGCAGTCCAGTCTCTCCCAGACTATGCTGGCACAGATATGGGGACTCGCTGACACTAAACAGACGGGCAAGCTGACCCGGGAGCAGTTCTCTCTGGCCATGTACCTAATCCAGCAGAAGGTCATTAAAGGCGCTGACCCTCCCTCCACTCTAACCCCAGACATGATTCCACCATCAGAAAGGACTGCAGCCACATTGGCGGGCCCTTGCTATGTGGGGCTTATGCCAGCTGTGAGACCTGAACTTGCTGCAGTCGCTAATATGCGCAGAGACAGCAGCAGTTCCACGGGGTCCGCCAAGCTGACGGGCATCAAAGAGCTGGATGACCTCAGCCAGGAAATAGCTCAGCTGCAGAGAGATAAATTCATTTTGGAGCAAGAAATCAGGGAAAAGGAGGAAACCATCAGACAGCAAAATAGTGAAGTTCAGGACATGCAGAATGGATTGGACAGGGAGAGCTGCAGCCTGCAGGACCTAGAGTCGCAGAAGCAGGATGCCcaggaacgtctggaggagatGGACCAGCAGCGCTCCAAGCTGGAGGGAATGCTCAACGACGTCAAGCAGAAGTGCCAGGAAGAGTCCCAGAGGATCTCGTCTCTGCAGAGCCAGATCCGCTCTCAGGAGACGGACCTCCAGAGCCAGGAGGAAGAGCTGAGCCGCACCAAGACGGACCTGAGCCggctgcaggaggaggaggcccTGCTCGAGCAAAGTCTGCTCTCTGGTCGGGTCCAGCTGGACAGCATCACCAAGTCGCTCAAAACCACTCAGGAAGAGATCAACCAGgCACGCAGTAAGCTGTCGCTGATCCAGGACAGCCAAAAGGAGATGACCAAGACCATTGAGCAGTACAACAGCGCTTTGAACGACATCAACGGAGGAAACTTCAGCAACCTGCCGGACTTAAGTGAAGGGTTTGCTGAGAAGGAGAACGGAGGTTTCAGAAGTGCGGATGACTCTTTCAAGTCAAAGATAGCCATGTTCAACAACAGCAGTGCTAAGGAGCCTCCAGCAGACCCCTTCCAGACAGAGGACCCCTTCAAGTCCGATCCATTCCTAGATCCATTTGGAGGAGATCCTTTCAAAGAAAGCGACCCCTTCAAAGGCAACTTAACTGAAGATTTTTTTCAGAGAACGGACAAGTCTAACCTGTTTGGATCGTCAGACCCCTTCAGTAGAAAACCCACACCACCAGCCAAGCCAAGTGCCCTGACATCTAACAGCCCAAAACCAGATGTGTTTGGGACAGTGAGCCCCTTTGGAAGCAACTCTTTTGGAAGCAAGGGGGGTGGATTTGCCGACTTTAGTCAGATGTCAAAGaaGTCAGACAACCCAGTCCTCCCATCAAAGAAAAATGTGCCTAACCGGCCTGCACCTCCCTATgGATCTGAATGTGTCAAGGTAAGACTGTACAAGGGCGTGGTGGTCAATCCTTTGCATGTGAAAAACCTGTCCGCACTGCATAATCGGAGTACAGTGATTAATGAGCAGCACAATTATTTTTATATCCCCAGTCACATTTATCCAAGCACACAAATTTATGGCACTAGAATGTCACTGTGTATGGTGTAGGAAGCTTCTAGTGTTGCTgtcttggcttttttttttttttatgtccgaGTGAAATATAAACGTCTGTATTTCTGCAGTTATTTTTCTCTTACTGCTATATATCAATTCATTTCAGTTATGTTTGACATAGCTTTTGACCTCCTGCCTAATTAGAAacatttgattttgaaattgcATCCACCCTTCATTTTTACATCTTGCTTTCGCTcaatgacttctgtctattCATGCTGGCAATTTAGCCTGCGTATTTGTCCACATCTAATGTTTGTTTCTCTGCTCTAGTTTGGAAGTGAGAGCCAGACGCTGGAGTGGGTCAAGCAGGAGAGCGAGCGTGAGGAGCAGGAGAGGCTGAGGAGGCTGCGGCTCCAGGAGCAGCAGGACCTGGAACTGGCCATCGCTCTCAGCAGGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155965 lncRNA downstream 69367 18081198 ~ 18083844 (-) True G115644
TU155962 lncRNA downstream 76152 18076540 ~ 18077059 (-) True G115641
TU155961 lncRNA downstream 76799 18075068 ~ 18076412 (-) True G115640
TU155949 lncRNA downstream 95105 18052984 ~ 18058106 (-) True LOC120568693
TU155934 lncRNA downstream 185519 17965813 ~ 17967692 (-) True G115624
TU156018 lncRNA upstream 62379 18232868 ~ 18234515 (-) True G115691
TU156041 lncRNA upstream 89435 18259924 ~ 18260284 (-) True G115710
XR_005640696.1 lncRNA upstream 99845 18270334 ~ 18286055 (-) True LOC120568297
TU156057 lncRNA upstream 125073 18295562 ~ 18295788 (-) True G115722
TU156082 lncRNA upstream 207911 18378400 ~ 18385959 (-) True G115738
XM_039816602.1 mRNA downstream 82774 18061303 ~ 18070437 (-) False LOC120568865
XM_039816601.1 mRNA downstream 82778 18060695 ~ 18070433 (-) True LOC120568865
XM_039816600.1 mRNA downstream 88103 18061303 ~ 18065108 (-) False LOC120568865
XM_039816599.1 mRNA downstream 88104 18060695 ~ 18065107 (-) False LOC120568865
XM_039816361.1 mRNA downstream 95052 18054558 ~ 18058159 (-) False LOC120568693
XM_039815691.1 mRNA upstream 1160 18171649 ~ 18175326 (-) True LOC120568289
XM_039815702.1 mRNA upstream 66301 18236790 ~ 18244258 (-) True LOC120568294
XM_039816978.1 mRNA upstream 129923 18300412 ~ 18306617 (-) False LOC120569106
XM_039816977.1 mRNA upstream 129923 18300412 ~ 18306617 (-) True LOC120569106
XM_039814932.1 mRNA upstream 310181 18480670 ~ 18494488 (-) True sppl2
TU155671 other downstream 1044307 17039800 ~ 17108904 (-) False ly97.3
TU155672 other downstream 1108149 17043126 ~ 17045062 (-) True G115406
TU155670 other downstream 1111735 17039800 ~ 17041476 (-) True ly97.3
XR_005640632.1 other downstream 1350947 16756331 ~ 16802264 (-) False epb41l3b
TU155525 other downstream 1513399 16637108 ~ 16639812 (-) True G115312
XR_005640621.1 other upstream 312667 18483156 ~ 18494488 (-) False sppl2
TU156258 other upstream 546393 18716882 ~ 18718544 (-) True LOC120568909
TU156342 other upstream 674416 18844905 ~ 18846277 (-) True G115941
TU156358 other upstream 761485 18931974 ~ 18935477 (-) True LOC120568972
TU156517 other upstream 1051302 19221791 ~ 19222726 (-) True G116084

Expression Profile