RNA id: XM_039815707.1


Basic Information

Item Value
RNA id XM_039815707.1
length 2947
RNA type mRNA
GC content 0.52
exon number 17
gene id LOC120568299
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 37297104 ~ 37331422 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAACTGGGGCATACGAAAACGACCACTGCAGCAGGCAGGCGGCACCGGAGCAGCGACTGTAACGTGTTTGGGCGAGCCAGGGACTCCTCGCTCCTTATTtaattgaCACTTTTTTCCGGGCTGATGTTACCCTAACTCAACGGAAACGCCCGTATAGTAAAAACACAAGATGGATCTGCGGTTACTTTTAATAGCAACGTTATCATCGGTCCTCTGTGGCAGCTGGGCACAGCAAGAGGGAAGCATATGCATCAAGGCGAACGCACAGTCATGTGGGGAATGCATCCAGGTGGCCGAGACGTGCGGCTGGTGTGCAGACGAAAACTTTCTCACAGTGGGCGAGTCCAAGTCGGCCCGCTGTGATGATCTGGAGTCCCTGAAGAAGAGGAATTGTGCAGTGACCAAAATTGAGAACCCACGCGGCAGCATCAAAATCGACAAGAACAACCCCGTCACCAACCGCAAGAATGTCGGGTCTGTGAAACTGAAGCCTGAGCAGATCACCCAGATCCAGCCCCAGAAACTCACCCTGACACTCAGATCTGGTGAGCCCCAGACTTTTGAGCTGAAGTTCAAGCGTGCGGAGGACTACCCCATTGACCTGTATTACCTCATGGACCTCTCCTTCTCCATGAAAGATGATTTGGAAAACGTCAAGAACCTTGGCACTGACCTCATGAGTGAAATGAAGAAGATTACCTCAGATTTCAGGATCGGTTTTGGCTCCTTTGTGGAGAAGACGGTCATGCCTTACATCAGCACCACGCCAGCTAGGCTCATCAATCCGTGCACAGGGAACCAGAACTGCACCAGTCCCTTCAGCTATAAGAACGTCTTGAAGCTGACCGACGAGGGGGACGAGTTCAACCGCTTGGTCAGTCAGCAGCAGATCTCAGGGAACCTGGACTCTCCAGAGGGCGGCTTCGATGCCATCATGCAGGTGGCCGTCTGTGAGAACCAAATCGGCTGGAGGAATGTGACTCGTCTGCTGGTGTTTTCCACTGATGCTGGTTTCCACTTTGCTGGAGACGGCAAACTGGGCGGCATCGTGCTGCCCAACGATGGGAGGTGTCACCTGGAGAACAACATGTACACCATGAGCCACTACTATGACTACCCCTCCATCGCCCATTTGGTTCAGAAACTGAGTGATAACAACATCCAGACCATCTTTGCCGTCACTGAAGAGTTCCAGCCTGTTTACAAGGAGCTGAAAAATCTCATTCCTAAATCAGCTGTTGGCACGCTGTCCTCCAACTCCAGCAACGTGATCAAACTCATTATTGATGCTTACAATTCTTTGTCGTCTGAGGTCATTCTGGAGAACAACAGGCTGCCGGAGGGAGTCTCCATCACCTACAAGTCCATCTGTAAGAACGGTGTAGAGGGAACGGGGGAGAACGGCAGGAAGTGCTCCAACATCTCCATCGGAGACGAGGTGTCTTTCAAGATTTCCATTGAATCCCAGAAGTGTCCGTCGATTGGCAAGACTGAAGTCATTAAAATCAAACCGCAGGGCTTCACCGAGGAGGTGCAGATAGTTCTGAACTTCATCTGCGACTGTCAATGCGCCGCAAAAGGAGAGCCCAACAGCACCAAGTGCTACGAGGGCAACGGGACCTTCGAGTGCGGAGCCTGCAAGTGTAATGAAGGGCGTATCGGGCGTCTTTGCGAGTGCAGCAAAGACGAAGTGCGGACAGAGGACCTGGATGCCAACTGCCGCAAAGACAACGGTACAGATATCTGCAGCAACAACGGCGACTGCGTCTGTGGCACCTGCGAATGCAAGAAGCGGGAGaatcctgcagagatctacagtgGCAAGTACTGCGAATGCGACAACTTCAACTGTGACCGCTCCAACAACAAGCTCTGCGGAGGACATGGGCGCTGTGAGTGCAGGAAGTGCGTCTGTGATGCCAATTACACAGGCAGCGCCTGCGACTGCTCCCTGGAGACGGCCACCTGCCTCGCCAAGAACGGGCAGATCTGTAACGGCCGCGGTACCTGTGAGTGCGGCCTCTGCAAATGCACCAACCCCAAATTCCAGGGTCCAACCTGCGAGATCTGTCCCACCTGCCCTGGCGTCTGCGCTGAGCACAAAGACTGTGTGCAGTGCCGAGCGTTCGAGGCCGGTGAGAAGAAGGACACGTGTGAGAGGGACTGCAGCTACTTCCAGCTGATCAAGGTGAAGGATCGCAACAGCCTGCCCCAGCCTACAGACCAGAGCTTCCCCCTGACTCACTGCAAAGAGCGAGACGCCAACGACTGCTGGTTCTACTACACCTACGCCATCCGGAACGACACCAAGGAGGTCTACGTGATGGAGCAGCTGGATTGCCCAGCGGGACCTGACATCATCCCCATCGTGGCGGGCGTGGTAGCAGGCATTGTGCTGATTGGCCTCGCCCTGCTGCTCATCTGGAAGCTGCTCATGATCATCCATGACCGCCGCGAGTTCGCCAAGTTCGAGAAGGAGAAGATGAACGCCAAGTGGGACACGCAAGGGAACCCCATTTACAAGAGTCCTATTAACCAGTTCCAGAATCCCAGCTATGGGAATAAAGGCGCTTCTCTTTAGGTCAAAGTTTGTACCGCCTGTTGGCCTTGTGTACTTGCATGTACTTCCTCTGTACAGAGTGCAGTTTCACACCTTGGCTGATTTCTGTAGGGTTTGCAGTGAAGTGAAAGGATTGGTGATTGCATGTTTTGAAGTTAGCATGCTTAACCACACATTGTTTGTTCCTAAAGTTGGTGTGATGTTGAGCTTTTTCCTTGATGTTAGTGACCACATTTCCAGAGGAAAACATGTTAATAGGAACAAACCCAATCATTTAGAAATAGTTTTTAGCATTTCTTTCTCTAATTTAGATCCTGCTCCCTGTGTTTATGCAGTGTACATTGCTGTCCAGTTGAGAGAATTTTCTTacgtcttaaagtgctcat

Function

GO: NA

KEGG:

id description
K05719 ITGB1, CD29; integrin beta 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162759 lncRNA downstream 3277 37294954 ~ 37296912 (-) True G120936
TU162708 lncRNA downstream 6713 37263316 ~ 37293476 (-) False LOC120567715
TU162665 lncRNA downstream 148305 37151549 ~ 37151884 (-) True G120865
TU162647 lncRNA downstream 211313 37088094 ~ 37088876 (-) True G120848
TU162645 lncRNA downstream 220658 37079302 ~ 37079531 (-) True G120846
TU162823 lncRNA upstream 675397 38006819 ~ 38007058 (-) True G120990
TU162821 lncRNA upstream 680382 38011804 ~ 38019060 (-) True G120988
TU162858 lncRNA upstream 773475 38104897 ~ 38105100 (-) True G121018
TU162862 lncRNA upstream 807563 38138985 ~ 38139436 (-) True G121022
TU162868 lncRNA upstream 928936 38260358 ~ 38260690 (-) True G121028
XM_039814684.1 mRNA downstream 11815 37246223 ~ 37288374 (-) True LOC120567715
XM_039816267.1 mRNA downstream 95219 37164848 ~ 37204970 (-) False LOC120568634
XM_039816266.1 mRNA downstream 95219 37164848 ~ 37204970 (-) True LOC120568634
XM_039814683.1 mRNA downstream 563053 36710109 ~ 36737136 (-) False LOC120567714
XM_039814558.1 mRNA downstream 739542 36501801 ~ 36560647 (-) True LOC120567636
XM_039815635.1 mRNA upstream 7637 37339059 ~ 37442761 (-) False LOC120568250
XM_039815634.1 mRNA upstream 7637 37339059 ~ 37442760 (-) True LOC120568250
XM_039814627.1 mRNA upstream 292505 37623927 ~ 37975533 (-) False LOC120567663
XM_039814626.1 mRNA upstream 292505 37623927 ~ 37975533 (-) False LOC120567663
XM_039814628.1 mRNA upstream 292505 37623927 ~ 37975533 (-) False LOC120567663
TU162701 other downstream 66712 37227935 ~ 37233477 (-) True G120891
unassigned_transcript_596 other downstream 238654 37061453 ~ 37061535 (-) True trnal-uaa_18
unassigned_transcript_595 other downstream 244189 37055918 ~ 37056000 (-) True trnal-caa_10
unassigned_transcript_594 other downstream 245478 37054629 ~ 37054711 (-) True trnal-uaa_17
unassigned_transcript_593 other downstream 249119 37050988 ~ 37051070 (-) True trnal-uaa_16
TU162801 other upstream 292519 37623941 ~ 37667980 (-) False LOC120567663
TU162876 other upstream 1103294 38434716 ~ 38435172 (-) True G121035
TU163045 other upstream 2045276 39376698 ~ 39376991 (-) True G121181

Expression Profile