RNA id: XM_039815716.1


Basic Information

Item Value
RNA id XM_039815716.1
length 1984
RNA type mRNA
GC content 0.47
exon number 8
gene id eif4e2
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26392889 ~ 26400884 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCACGACCAACACACTGCGTGCGCGTACACGTGCGTCCGCTGTGCGCGCCGCCGTTCCTGCGGAATTCAGGAGGCTGTGGTCGGACTCCGAAAGGCTCCCACCTAGAAAATAATGAACAACAAATTTGACGCTCTGAAAGATGATGACAGTGGAGACCACGACCAGGACCAAGGCTCACCGAAAGACAGTGAGAAGGAAAAAGCTGAAGACGAGGACAAGGAACAGAACACCTCCAAGAAAAAGATGGTGGTGCCAGGGGCAGGAGAGCACCCTCTTCAATACAACTACACCTTCTGGTACTCCAGACGCACCCCCGGAAGACCAGCCAGTACTCAGAGCTACGAGCAGAACATTAAACAGATTGGTAGCTTTGCCTCGGTGGAGCAGTTCTGGCGTTTCTATAGTCACATGATCCGGCCAGGCGACCTGACAGGCCATAGTGACTTTCACCTCTTCAAGGAGGGTATTAAACCCATGTGGGAGGATGATGCCAATAAGATGGGTGGGAAGTGGATCATCCGTCTGAGGAAAGGCCTGGCATCTCGGTGCTGGGAGAACCTGATCCTGGCCATGCTTGGGGAGCAGTTCATGGTTGGAGAGGAGATCTGCGGGGCTGTGGTGTCAGTACGCTTCCAGgagGACATCATCTCCATCTGGAACAAAACCGCTAGCGACCAGGCAACCACTGCCCGCATCAGAGACACCCTGCGCCGAGTCCTCAACCTGCCTCCCAACACCATCATGGAGTACAAGACTCACACAGACAGCATTAAAGCATGGGAAGACTTCCATGGACTGGTGAATCCTAGTGGCGGACGTTAGCCCCTCACACAGACAACCTCTGCAAGAGTGTGCGTATTGATGTGCTGGGGGATGACGAGTCTAGGGAAGGATACCTCTATGTGGATTGGCACTGTGTAATATGAAGACAGAGCAAAAGTCAGGAACAGAGGCAAGAAGACCATTCCTTCTTGGCGTCCAATTGGAAATGAACCGAAAAGCCTGTCCACAGAACACTGAACCAAGCCGAAGAAGGAAAAATgcgttatttttaatcaaccAGAGAAGAATGAAAGAGCCtccgattttattttttattttttattaatgcaAGTTGTAACATCTGTTAACTTGCCACCAGAGGGAGGCCATGTGACTGGTGTTTGCTGATCTGGTCATTAGCTGTTAACAAATTGTACTtgacaaaatacaacaaaaccaATCTGTTATATAACCTAGGTCAGATCGTATTGCTTAGCATAACATCACACGTCCTGCTGTTTAAAATGAATCTGTGTTAATCTGTCTTATTGGGACTCAAACAGGGTTGCAGGTAGATGTTATTTTATTACAGTGCTGTATTTTAACTACAATTCCTCTGGTCATTTCAAACTGGAATGATAACTATTATTGTGTACGATATATTTGTAAATACAGTCTACTTAAAAAGATCACGTAACTGAATCAGCAATGATTCTCTATCTTTGACCTGGAGGTTGAATCCCAAAGGATGAGGACCATCCTGTGTTGGGCAGAAGGTTGTATAACCGGCATCTTAAGAATGGACTGCCAAGCTGCCTGAATCACTGTGCCTGGCCTCGAGCCCAACCCGACCCAGtttttccttctgtctgttTTGTCTTTATCCCACCTTGAAAGAATCCAAGCGATGGGCTCTGCTTTAATGTCCTCAAAGGTGTATAGGAGTCCTGAAACACTGACCTTCACTCCCTTTTCCATTTtgtagtaaaagaagaaaaaaaatgaaactggGCCCAGGGTCAGGGTCTGTTACAGTTTTTATCAATTCCTCTGGAGCATTTTTCGGAACCACGTCAAGAAAGCGCCTATGGTTtgttgaaaaactgtaatgctGCCCGTAATAGGTGGTGTGATGATGGGTACAGGTGTGTGTCAAACACTGCTGGATGTACACCTGATGGATTATAGcaataaatgtcaaatatgCAGCTGCTGCTAAA

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159094 lncRNA downstream 73326 26315822 ~ 26319563 (-) False camk2n1a
TU159059 lncRNA downstream 83563 26308787 ~ 26309326 (-) True G118002
TU159052 lncRNA downstream 181141 26211508 ~ 26211748 (-) True G117995
TU159051 lncRNA downstream 182221 26210349 ~ 26210668 (-) True G117994
TU159050 lncRNA downstream 198005 26193007 ~ 26194884 (-) True G117993
TU159131 lncRNA upstream 20566 26421450 ~ 26425869 (-) False LOC120569074
TU159132 lncRNA upstream 20566 26421450 ~ 26424927 (-) True LOC120569074
XR_005640834.1 lncRNA upstream 20571 26421455 ~ 26426798 (-) False LOC120569074
TU159151 lncRNA upstream 73003 26473887 ~ 26474956 (-) True G118075
TU159153 lncRNA upstream 76579 26477463 ~ 26479678 (-) True G118076
XM_039816115.1 mRNA downstream 44738 26334440 ~ 26348151 (-) False vwa5b2
XM_039816114.1 mRNA downstream 44738 26334440 ~ 26348151 (-) True vwa5b2
XM_039816117.1 mRNA downstream 62627 26325488 ~ 26330262 (-) True mul1a
XM_039816630.1 mRNA downstream 73294 26315770 ~ 26319595 (-) True camk2n1a
XM_039815723.1 mRNA downstream 189329 26195843 ~ 26203560 (-) True map6d1
XM_039815712.1 mRNA upstream 98 26400982 ~ 26410407 (-) True capn10
XM_039815713.1 mRNA upstream 2092 26402976 ~ 26410408 (-) False capn10
XM_039816744.1 mRNA upstream 10283 26411167 ~ 26412103 (-) True ccl20a.4
XM_039816857.1 mRNA upstream 95987 26496871 ~ 26508800 (-) False gpsm2
XM_039816855.1 mRNA upstream 95987 26496871 ~ 26505301 (-) False gpsm2
TU158687 other downstream 1469571 24922203 ~ 24923318 (-) True G117732
TU158445 other downstream 1856393 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 2371388 24021439 ~ 24021501 (-) True LOC120569138
XR_005640840.1 other downstream 2372451 24020362 ~ 24020438 (-) True LOC120569137
unassigned_transcript_562 other downstream 2523663 23869155 ~ 23869226 (-) True trnap-agg_8
TU159298 other upstream 260737 26661621 ~ 26665952 (-) True G118175
XR_005640672.1 other upstream 418954 26819838 ~ 26824570 (-) False cirbpa
TU159721 other upstream 1270092 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 1312583 27713467 ~ 27714390 (-) False G118524
TU159738 other upstream 1316667 27717551 ~ 27718759 (-) True G118524

Expression Profile