RNA id: XM_039815725.1


Basic Information

Item Value
RNA id XM_039815725.1
length 3662
RNA type mRNA
GC content 0.46
exon number 4
gene id ppm1la
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24924580 ~ 24933813 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACACCTGTCTTATTCTCACTCTCATTTGGTGGTTTGACACAGCTCCAAaaatggaggtgtgtgtgtgtgagaaaaatgCGGAGACTGAATAGACACAGGCTATCCGAGAGAAGAAACGGGGTCAGCGGCGGAAAAGGAGGACATCGTCGGCTCTCGCCCCCCCGGTGACTCCCATGTCTCTCGTCGGGGTGGGTCTAACCCAAAATATTCGTCATCCTACAATGGGCTGTGAGAGATCGACTCAACTCGGAGAATCCTCTCGCAGCTGGATAGCCGAAGATAGGACCAAGACATCGGACCGAGTCGATGACCGTGGCCTGTCGGCTTTTGTTCTCCGCCTCTCGGCCCGGTGTCCCGGCAGTCTGCCGTGCTTTGCGCAAATGCGCTCGGCGTAGAGAAGACAGGCCTCCGAGGAGCACTTTCAATGTTGAAATCCAGTCTTTGTCAGTCAGCGTAGTAGGCTAGTGAATCGATTTCTTCATAGTTCCGCTGAGCGGATGGAGTGAATTGagccaaaagagagagagagagagagagcgagagagagagagagagagagagagagacagactgcagtTCTGTTGCGTGTGATGATAGGAGACACAATGACGCTCTTGTCTCTTCTGGGTCGGATTATGCGTTATTTTCTCCTCAGGCCTGAGACATTGTTTCTGTTGTGCATCAGTCTGGCGCTGTGGAGTTATTTCTTTCACACGGACGAGGTGAAAACCATCGTCAAGTCCAGCCGGGACGCCGTGAAAATGGTGAAAGGGAAAGTGGCGGAGATGATGCAGAATGACCGGCTGGGAGGCCTCAGTGTCCTGGACGCAGAGTTCTCCAAAACCTGGGATTTCAAGAGTAACAACGTAGCCGTGTACTCCATACAGGGGAGGCGAGATCACATGGAGGACCGCTTCGAGGTGCTCACCGACATCACCAACAAGAGCCACCCGTCCATATTCGGGATATTTGACGGTCACGGTGGAGAGGCTGCAGCTGACTATGTGAAGGCCCACCTGCCTGACTCCCtgaagcagcagctgcaggcctttgagagagagaagagagatggTGCTCTCTCTTACGGCAGCATCCTGGAGCAGCGCATCCTGACCGTGGATCGTGAGATGCTGGACAAGCTCTCTGCAAACCACGAtgaagcagGAACGACATGTCTAGTAGCGCTGCTGTCAGACAGAGAACTCACAGTGGCTAACGTTGGAGACTCTCgtggtgtgttgtgtgacaAAGATGGGAACGCTGTTGCACTATCGCACGACCACAAGCCGTACCAGCTCAAAGAGCGCAAGAGGATCAAGAGGGCAGGAGGTTTCATCAGTTTTAATGGATCCTGGAGAGTCCAGGGAATCCTGGCTATGTCCCGCTCTCTAGGGGACTACCCGCTGAAGAACCTCAACGTAGTCATCCCCGACCCCGATGTCATGACCTTTGACATGGACAAGCTGCAGCCAGAGTTCATGATCCTGGCATCAGATGGCCTGTGGGACGCTTTCAGCAACGAGGAGGCCATTCGGTTCGTCCGCGAGCGTCTGGACGAGCCTCACTTCGGCGCCAAGAGCATCGTCCTCCAGTCTTTCTACCGCGGCTGCCCCGACAACATCACTGTCATGGTGGTGAAGTTCAAAAGTGGAGCTGGGGGGAGCAGCAAGGCAGGGGAGTAGGTCAGGCTCAAGTTTGGGGCTCACATTGTGATCAATGTTTTCAATGATTTTCCACATCTTCTGGATGGAGCAGCGAGTGCGATATCCCAGTAGGACTGGAGGAAGTTAAAGGTTACTGAGAACTGTACaagtgcacgcacgcacacacatacacacacatacacacacatgcgaaAACACGTCcaaattaggttttgttttgtttgtagatTTCTGATTGAGATAAGGGCATTTAAACACAATACAGATATCCTAACCATCTGCAAACTTCataatgaaaacatgaaaaaataatGAAGTTTTCCAACAGCAGAGCTgcataaacacagacagacaccagGCAGGGGATTCTTTCTCTTAACCAGCACACTTCAGACTGTGATTTATTTACTACTGTATACCGTTAATGCACATGAATGGTACAGCTCCACTGGAGGCTTCTTCACAGGAGGCTTCAACTAGTGCCTATTCAAAAGCTACTGTGCAACCACAGGAAGctattgaaaatgtatttgctaAAACACCACCCTGCTTGCTGCATTTTGTTGATGCTCTCAAGTAATGTACGCGTCTGTTACATTTTTGATATGGAAAATGTCAAACATAAAAAGACTCCAGTGGATCCATACCTTTTATTTAACTTGAAGTGATGCTGCACTTAAAATCTAACTTTTGAGTATCAACTACTGGCCGCCTGTAGACTTAAATGGTAGCTGTTAACCATCTGTAGTTTCACCCTCTGGCTGCAGTCAGCTTTGAACAGAGTCACAATACTCACTCACaatactgctgctgctctgtgggTTGGATTTCATTCAGCATTTAGGTGCTTACACATCTAATAAATGAAAGAGAACTGTCTTTAAGTTAAAGCAGACACAAAATCTTCtaccgggttggctcagtgggtagagcaggcacacatatatttagaggtttatgccttgacgcagatgtccagggtttgactccgacctgtgacaatttcctgcatgtcttccccctctctctcccctttctcacctctcctgtccattaaaggcggaaaagccccaaaaaataaataaaataaacttttgAGTAAACCAAAGGTTAGTGATACTCAGAAGATAGATTTTGCGTTGTAGTATTTCTTACTTACGATTTGTTTCTAACatacaacacatgcacacagacacacaaacagttatGTCAAAAGTTGCACTtttcagatgtttatttttttggaatGGTGAATTGTTACATATAAACTGTATGTCCTCAGTAATACAATAGGGTTTTAATGTATGTACAACCTGATTTAATTCCTGACCTTAACCTCTTGGTGGAACTAATGTAAGCTGTTCAATCAAAGTTGTTTTACACCATCTGTATCAGGGCATGTGCTTTGGCTTATCCATGTTCATGAACaaagtacatacatacagtatgtatccaTTGACACAATGTTGGCTGCCTTTTGACCTGAAAGCACGAAACAGGAGGTGCAACAACAGACTTCCACACCTCTGCTGCCATGAGAAACCAACGCATGGTGAACTGTACAGCCGGAATGCTAGTAGCTAGTAATGTGATATGCTCCTGAAGAAATACAACTGGTGTCATCAACAGCAACAACCTGTCAAGGAAGGTTACAGTAAACCAGACTTCTACTTTTTTATGTTCAACTATGTTTCACAACTGTTTCATGACCTTTGCATCAATTGAGAtaagtctttttttaatttaagagtTTACCTAATgccttatttgttttttattttggtgtcTGGCGGATTGCCAaatcaatatactgtacattaattTAGTGTCCTTCTGTACATGAGCAAAAGTTTACAGAAAATTACCCATCCCTTTAATTTGAGAAGCTGTCAACGATTCACACGTGGTGAGGGGATGCGcagtgtaaaaagaaaaagagcagtGTAAAACAATTCTGTATGTAAACTATCAGTATTAAACAAACTCTTTCAACTGGAA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K17506 PPM1L, PP2CE; protein phosphatase 1L

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158661 lncRNA downstream 32121 24876086 ~ 24892459 (-) False G117718
TU158662 lncRNA downstream 32121 24876086 ~ 24892459 (-) True G117718
TU158664 lncRNA downstream 32121 24876086 ~ 24892459 (-) False G117718
TU158657 lncRNA downstream 56149 24863009 ~ 24868431 (-) True G117716
TU158522 lncRNA downstream 127324 24787583 ~ 24797256 (-) True G117616
XR_005640664.1 lncRNA upstream 89588 25023401 ~ 25048014 (-) True LOC120568137
TU158767 lncRNA upstream 347595 25281408 ~ 25335213 (-) True G117786
TU158772 lncRNA upstream 416413 25350226 ~ 25353750 (-) True G117788
TU158773 lncRNA upstream 416413 25350226 ~ 25373646 (-) False G117788
TU158798 lncRNA upstream 659230 25593043 ~ 25593585 (-) True G117812
XM_039815726.1 mRNA downstream 3191 24920430 ~ 24921389 (-) True arl14
XM_039815586.1 mRNA downstream 49615 24870002 ~ 24874965 (-) True LOC120568222
XM_039816661.1 mRNA downstream 274392 24582892 ~ 24650188 (-) True tnn
XM_039815413.1 mRNA upstream 9847 24943660 ~ 24949323 (-) True tal1
XM_039815414.1 mRNA upstream 9847 24943660 ~ 24949314 (-) False tal1
XM_039815408.1 mRNA upstream 16685 24950498 ~ 24964964 (-) False si:ch211-13f8.1
XM_039815407.1 mRNA upstream 16685 24950498 ~ 24964964 (-) True si:ch211-13f8.1
XM_039815416.1 mRNA upstream 53776 24987589 ~ 24992610 (-) True zgc:110366
TU158687 other downstream 1262 24922203 ~ 24923318 (-) True G117732
TU158445 other downstream 388084 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 903079 24021439 ~ 24021501 (-) True LOC120569138
XR_005640840.1 other downstream 904142 24020362 ~ 24020438 (-) True LOC120569137
unassigned_transcript_562 other downstream 1055354 23869155 ~ 23869226 (-) True trnap-agg_8
TU159298 other upstream 1727808 26661621 ~ 26665952 (-) True G118175
XR_005640672.1 other upstream 1886025 26819838 ~ 26824570 (-) False cirbpa
TU159721 other upstream 2737163 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 2779654 27713467 ~ 27714390 (-) False G118524
TU159738 other upstream 2783738 27717551 ~ 27718759 (-) True G118524

Expression Profile