RNA id: XM_039815737.1



Basic Information


Item Value
RNA id XM_039815737.1
length 2586
RNA type mRNA
GC content 0.46
exon number 11
gene id ubxn7
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24063157 ~ 24071794 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AGGGACGGCGTAGCGCATGCGCGacatttatgttgttgtttgtggcGGTAAGATGGCGGCGCTCGGAGACACCTCAGCTCCGGGGGTGAATGGGTTAATACAACAATTCACATCAATAACAgGAGCCACAGAGAGTGTAGGACAACATATGTTGGAAGCATGCAACAACAACCTGGAGATGGCAGTGACCATGTTTCTGGACGGAGGCGGGATTGCAGAGGAGCCCAGCACCAGCTCCAGTTCAGCAGCTTCAAGCAGCAGAGCTCCCCCTTCAGATGACGTACGAGCACCCATTCCTCAGAAGCAGGACATATTGGTGGAACCTGAACCATTGTTTGGAGTGCCAAAGCGAAGAAGACCTGCTCGATCTATATTTGATGGTTTCCGAGACTTTCAAACAGAAACAATTCGCCAGGAACAGGAGCTGCGTAACGGTGGAACAGTGGATAAGAAACTGAGCACCCTGGCAGACCTTTTCCGTCCTCCCATTGAGCTCATGCACAAAGGCAGCTTTGAGACGGCAAAAGACTGTGGACAACTTGAGAACAAGTGGCTTATGATCAACATTCAAAATGTTCAGGACTTTGCCTGTCAATGCCTGAACAGGGATGTTTGGAGTAATGATGCAGTGAAGACCATCATCAGAGAACACTTCATATTCTGGCagGTATATCATGATAGTGAAGAGGGACAAAGATACATCCAGTTCTATAAGCTGAACAAGTTTCCCTATATTTCCATCCTCGATCCCCGCACAGGTCAAAAAATGGTGGAATGGAATCAGCTGGACGTGGCATCATTTTTGGAGCAGACTACTGGCTTCCTGGCAGAGCACGGCCAGCTCGATGGGCCATCCTGCCACGCACCCCCTGCCAAACGAGCTCGCTCTGAGAGTCTGATTGATGCCAGTGAAGACAGTCAGCTGGAGGCAGCGATACGAGCCTCCCTACAGGAGACCCACTACGAGTCCTCAAATGCCCCCGAGGCCCCTGATTCCCCCCGATCAGATGACGAATCAGATGCAGAGCCTTTCTCTGATAGCGAGGGTCCCATATCTGTTGATGGCTCAGACAGCGAAGAGAAAAGTTTTACCAGCAAACACACTCCGCCCCCTCCGGCCACTGCGGCCCAGCAGCGTCTACACCCTGATAGTTCCACTTCTTCCCATAGAAAGTCTCCATACAAAGAAAACAACCACAGTCATAAGAAAGAGGAGAGCAAAAAGAACCACCTGGAGCCCTCAGCTGCTGCTCCTCGTCATCCTCATCCTGACGCAGATTCTGCAGGTAACCACTGTCCCCCAGCAGACGAAAGTGCTGGACCTTCCACGACTAGCACCACCAAAATCTGTGACGTGGACTGTCCTGACGACAATGgtccCAAAGCCAGGTTGATGCTCCGTTACCCTGATGGACAGAGAGAGCAAATTTCCTTGTCTTCTAAAGCAAAACTTTTGGCCCTAGTAAGACACGTCCAATCCAAAGGCTACCCAAATGAACGCTTTGAACTCGTCACCAACTTTCCCAGAAGGAAGCTTGCCCACTTGGACTATGACATCACGCTGCAGGAGGCGGGGCTTTGTCCACAGGAGACTGTATTTGTTCAGGAGAGGAACTAGCCTTGTCAGACACACTCACTTTTGCTTGTCTGTATCTCTCTGCTAGACCTCACCCTCTCACCAATGATCTGGGACGATGTCACTGGCCTTGATCCTATAACCTTCTGTTCTCCTGGAATTAGGCCCAATTTTTGCCAAGACAACTCTTTGTGGATGGACTACTTTCCCCGCCACTCCACGGGTCTGAATACTGACATCTTTACTGACAGCCTAATCCCTTTGTAGTGCGCTACAGTTGGCCAGTAAGGTGTTAAAGATGACactcttaaattttttttaatgaaatatatTCTTTTCTGATGCAGGCTTCATCTTGTTCTGAACACTGAGGCACATCTggatagtatatatatatatatatatatatatatatatatatacacaatagctcatattcaaataaaaacaaagcctACATAATGGATCACTGATTGATGATGAGGCACCAGGGACTTGTACAAAAAGACTTTTACCTCCCAGAAAGGATGTTAAGTGTCAGAGTTTATTTTCTTGCTCTTGTTATTTTCTTTACCGGGGACAGGTTAAGAGAGGCtcattattgtttattttgacCCAAAGTCGGTCCCTCACACAGTCGTTGTTTGAACAATTGTAATTATTTGGAAGGCAGGGGTACTAAGAGAAATGGTTTCGGAAATTACTAGTCAAGAAAATGCGTCGGACATCTGTGACACACTTGTGTAGATCTGAGAGGATTTGGGTTGATCTGCACATTTTTACTCAAGTTTCTATTGGTTAATTAGAGGCTCATAGATTGTTTTTGGATTTCAACTTTTGATACAGAAGGGAATGAATGAAGGGTGGTACATCTCATCAGTCGGACCTACACTGTACAGAGATGGCTTAGAGAGACTGATATTTAGCTGTAGTCAatgtttcctttcttttttttatatgctgCCAAGAAAATATGCTGATGTTGAAATATAACCACCAAAACCAAGAGA

Function


GO: NA

KEGG:

id description
K24350 UBXN7; UBX domain-containing protein 7

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU158201 lncRNA downstream 122363 23940225 ~ 23940794 (-) True G117372
TU158197 lncRNA downstream 125050 23934919 ~ 23938107 (-) True G117369
TU158158 lncRNA downstream 166246 23895975 ~ 23896911 (-) True G117343
TU158157 lncRNA downstream 167387 23895519 ~ 23895770 (-) True G117342
TU158156 lncRNA downstream 168056 23894159 ~ 23895101 (-) True G117341
TU158367 lncRNA upstream 123513 24195307 ~ 24199562 (-) True G117501
TU158374 lncRNA upstream 137755 24209549 ~ 24212225 (-) True G117505
TU158376 lncRNA upstream 142043 24213837 ~ 24216457 (-) True G117507
TU158388 lncRNA upstream 168827 24240621 ~ 24242247 (-) True G117514
TU158437 lncRNA upstream 267288 24339082 ~ 24462553 (-) True G117553
XM_039816992.1 mRNA downstream 18733 24036894 ~ 24044424 (-) True tfa
XM_039816991.1 mRNA downstream 27636 24013677 ~ 24035521 (-) False eif4g1a
XM_039815738.1 mRNA upstream 927 24072721 ~ 24081240 (-) True ppp1r7
XM_039815962.1 mRNA upstream 70522 24142316 ~ 24147110 (-) True elovl1a
XM_039815120.1 mRNA upstream 89069 24160863 ~ 24164722 (-) True thap4
XM_039815119.1 mRNA upstream 93047 24164841 ~ 24168643 (-) True agxtb
XM_039816661.1 mRNA upstream 511098 24582892 ~ 24650188 (-) True tnn
XR_005640841.1 other downstream 41656 24021439 ~ 24021501 (-) True LOC120569138
XR_005640840.1 other downstream 42719 24020362 ~ 24020438 (-) True LOC120569137
unassigned_transcript_562 other downstream 193931 23869155 ~ 23869226 (-) True trnap-agg_8
unassigned_transcript_560 other downstream 195132 23867952 ~ 23868025 (-) True trnai-aau_23
XR_005640657.1 other downstream 571545 23468620 ~ 23491612 (-) False LOC120568062
TU158445 other upstream 427586 24499380 ~ 24536496 (-) True G117560
TU158687 other upstream 850409 24922203 ~ 24923318 (-) True G117732
TU159298 other upstream 2589827 26661621 ~ 26665952 (-) True G118175
XR_005640672.1 other upstream 2748044 26819838 ~ 26824570 (-) False cirbpa
TU159721 other upstream 3599182 27670976 ~ 27675360 (-) False LOC120568986

Expression Profile


XM_039815737.1 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 40.
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XM_039815737.1 Expression in each Bioproject

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XM_039815737.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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