RNA id: XM_039815740.1


Basic Information

Item Value
RNA id XM_039815740.1
length 2800
RNA type mRNA
GC content 0.44
exon number 10
gene id ss18
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23177741 ~ 23189571 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGAAATTGAATCCTATTCTGAACTGTGTGATCTGAGTTCTACCGATTTGTTAAGTGTGTTAGCTACTTTTGACTTGTATGTCTAGTTCACTTTAATTTCATAGAGAATCACCATGTCGGTGGCGTTTGCACCTCACAGGCAGCGTGGGAAGGGTGACATAACACCCGCTGGAATACAAAAGTTACTTGACGAAAACAACCAGCTGATCCAGTGTATAATGGACTTCCAGAGTAAAGGCAAAACAGCAGAATGTTCACAGTATCAACAGATGCTGCACAGAAATTTAGTGTACCTGGCCACGATAGCAGACTCCAATCAGAACATGCAGTCTCTCCTCCCTGCTCCACCCACTCAGAACATGCCCTTGGGCCCTGGTGGGATGAACCAGAGTGGGCCCCCCCCTCAGCCTCCTCATGGTCACAACATGCCCTCTGAGGGTATGGTCAGCGGTGGCCCTCCAGCCCCACACATGCAGAACCAGATGAATGGACAGATGCCTGgGCCTAATCACATGCCCATGCAAGGTCCCGGTCCAGGTCCCAACCAGCCCCCAAACATGCCCAGTGGCTCTATGAATATGCCCCCCAGCAGCCATGGTTCAATGGGTGGTTACAATCACACTGTCCCTTCTTCCCAGGGCATACCAGCTCAGAGCCAAATGAACATGACCCAGGGCCAGCCCATGGGAAACTATGGGCCTCGGCCAAACATGAACATGCAACCCAGTCAAGGCCCCATGATGCACCAGCAGCCTCCCACTCAGCAGTATAACATGCCTCCTGGTGGTGGTGGACAGCACTACCAAGGGCAACAGACCCCAATGGGCATGATGGGCCAGGTTAACCAAGGGAACCATGTCATGGGGCAGAGGCCAATGCCCCCCTACCGACCCCCACAGCAAGgaCCCCCTCAGCAGTACCCAGGGCAGGAAGACTACTATGGGGACCAGTACAGTCACGCAGGACAGGGAGCCTCAGAAGGTAATGCCCAGTATGGCCAACAGCAGGAAGCATACCAGCAAGGCCCTCCGCAGCAGCAGGGCTACCCTCCTCAACAGCAGTACCCGGGTCAACAGGGCTACCCACCACAGCAGCAGGGTTACGGTCCTGCCCAAAGTGCCCCAGGACAGTATCCCAATTATCCTCAGGGGCAGGGACAACAGTATGGGGGCTATCGCCCTCCCCAACCTGGACCCCCACAGGGCCAACAGCAACGCCCCTATGGCTATGACCAGGCCCAGTATGGAAATTACCAGCAATGAGAGATGGTCACATCAACCCACACAGCTCTGCTCTGATCTCTGTCTGAGCTTTGACCTCTGGTCAGCTGCCAAGCAGACTCAAATGATGGTTGTAGCTCACTGAGATTGTCTCAGACACGAACATGCAACactcaaaaatacaaaatacgtTTTCCCCTCTCTTTGGGCTCTTATCCAATGcctataaaatgtatttttctcatGTACATTGACTTGATACAAGTCCATGACTCACCCTCTGGTCCAGTATGTCTCAAAGCAGCAATGCCTTAAAAATGGAACTGCCTTATCCTTTAGCATTGCAGATTGTGAAACAAAATTTTGGATATCAGagataaatgtaaatgtacagtTTCAATCTACTGTGGTGCATTGTTCCTCTATCCTTCAGCTCCTTGTTCATAAGAAGCAATAATGCCAGCAGTAGGGAAATGTGTGGGGGCTTGGAGATGAAATAATGCACCAGACGAACTTCCCGCTAGGCCATGGTACGTGTCTtgatgtatgtgatgatgtaaaaatatattttatgctTTTTAGATCAAAATAACTTTGTATAAGACATTGGAAACTAGTACTAAAGCGGTGTTGTTTATTTCATGTGTATgtgtcaatgtttttttttttttttttttgtaatgatcCCATCCagcatattgttttattttttatttttgttgtgttgAATTGTATAACTATTCAATTGGATCTGCTACGTCTGTGACATGGGCACTATGAATTATTTGTGTAAAAACAGAACATTAATTGACATGCAAAGAAATTCCTTGAAGGACAAAAAACATACATCATACCTGGAATTAGAAAATGTTTAATGTCTGAAAACGCAAGAAACAATTGCTGTATTCTTTGTTAAGCTGTGTATTTAAatctgtgagaaaaaaaatctatatcaaatttcttttttttttttttaaaccacataACCTGAAGGTATAAGAATAATGGCCactggcctttatttgacaaatGTGCCCAAAGATGTAATATGTAGCAGAAGCCACTGCAAAGTGTAAGTCATTGCTCTCTggagtttttttcttcttctatacAAGCACCTCAGTCTTGTCCGTTGACTGCACATTGGTGAATGGAAAAGATCAAACTTGGTATAATAAATGTTTCTAACAAGTATGTTGTTTTGTTAGTCTTGACTTTGCTGGAATCCCCTTTTCCCTTTTGAATAAACGTCTAAGTTGATGTCATTCAAATGGTGTTGTGTGTGAATAATAAAGATTGTTACTGTCAAATATGTAACATAAGATGTGAAAATAATGTTCTCAAATGGATTCCTTAATTTTACAGTAAAGACTGGTTGTGCAGTTTTATATCACTGGCTTGATATCTGTTTTATGGtgcatactttattgatcccataTGTAcagcagcattaaaaaaaaggaattcaTTGTTTATGGCAGTTTTAATATTTGGCATTCTGCACCCCATCCAAGTGGTCACATTTGTGTCATGACAATGTATAACTGTACATTACAATAAATTGGAAGaatctttaatata

Function

GO: NA

KEGG:

id description
K15623 SS18, SSXT, SYT; protein SSXT

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157860 lncRNA upstream 259635 22917876 ~ 22918106 (+) True G117128
TU157795 lncRNA upstream 423251 22752252 ~ 22754490 (+) True G117082
TU157787 lncRNA upstream 430009 22747120 ~ 22747732 (+) True G117077
TU157668 lncRNA upstream 704901 22465335 ~ 22472840 (+) True G116978
XR_005640771.1 lncRNA upstream 862794 22307767 ~ 22314947 (+) True LOC120568744
TU157944 lncRNA downstream 184139 23373710 ~ 23374199 (+) True G117187
TU157950 lncRNA downstream 187562 23377133 ~ 23378516 (+) True G117190
TU157982 lncRNA downstream 250000 23439571 ~ 23440835 (+) False kdsr
TU157984 lncRNA downstream 256780 23446351 ~ 23462300 (+) True G117219
TU157987 lncRNA downstream 279049 23468620 ~ 23514085 (+) True G117220
XM_039816700.1 mRNA upstream 30324 23134256 ~ 23147417 (+) True LOC120568942
XM_039816701.1 mRNA upstream 30324 23134261 ~ 23147417 (+) False LOC120568942
XM_039816702.1 mRNA upstream 30324 23134262 ~ 23147417 (+) False LOC120568942
XM_039816970.1 mRNA upstream 48789 23122523 ~ 23128952 (+) False aqp4
XM_039816969.1 mRNA upstream 48789 23122656 ~ 23128952 (+) True aqp4
XM_039815864.1 mRNA downstream 22927 23212498 ~ 23302789 (+) False LOC120568373
XM_039815865.1 mRNA downstream 22927 23212498 ~ 23302789 (+) False LOC120568373
XM_039815859.1 mRNA downstream 23107 23212678 ~ 23302789 (+) True LOC120568373
XM_039815861.1 mRNA downstream 23107 23212678 ~ 23302789 (+) False LOC120568373
XM_039815863.1 mRNA downstream 23107 23212678 ~ 23302789 (+) False LOC120568373
XR_005640697.1 other upstream 499010 22641510 ~ 22678731 (+) False LOC120568311
TU157733 other upstream 565332 22608064 ~ 22612409 (+) False LOC120567968
XR_005640709.1 other upstream 1280350 21870953 ~ 21897391 (+) False LOC120568354
TU157037 other upstream 2262453 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 2802108 20373235 ~ 20375633 (+) True LOC120567833
TU158062 other downstream 487508 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 661308 23850879 ~ 23855157 (+) True G117319
unassigned_transcript_561 other downstream 678683 23868254 ~ 23868325 (+) True trnaw-cca_13
TU158168 other downstream 716299 23905870 ~ 23908401 (+) True G117353
TU158169 other downstream 723093 23912664 ~ 23914498 (+) True hes6

Expression Profile