RNA id: XM_039815747.1


Basic Information

Item Value
RNA id XM_039815747.1
length 4615
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC120568321
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3749457 ~ 3760667 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAACTTCCTCCCGTGTTGTGATGCAGATATGTTTCCTCCAGGTTAAAATTTTGAGATTCTTACTGCATGCCAGCGAAAAGTCAAATCCAACTTACATAAGActttccagtgtgtgtttgagggaattgctaaagcaggaaacccaacccttctgaatcggatgttcacagagatctacatcacaaAGGGAGGGACTGCAGGGGTCAATaatgaacatgaggtcagacagattgaaacagcatcctGGAAACaagacagaccagaaacaacaataacatgtgaagacatctttaaaaccccacctggaagagaagaaccaatcagaacagtgatgacaaagggagtggctggcatcgggaaaacagtcttaacacagaagttcactctggactgggctgaagacaaagccaaccaagacatccagttcacatttccattcacctttagagagctgaatgtgctgaaagagaaaaagtgcagcttggtggaacttgttcatCACTTCTTTAGTGAAATCAAAaaagcaggaatctgcaggtttgaagacttcccggttgtgttcatctttgacggtctggatgagtgtcgacttcctctggacttcctcaacactgagatcctgactgatgttacagagtccacctcagtgggtgtgctgctgacaaatCTCATTAGGGGgaaactgcttccctctgctcgcctctggataaccacacgacctaCAGCAGCCgatcagatccctcctgagtgtgttgacatggtgacagaggtaAGAGGGTTCACTGACtcacagaaggaggagtacttcaggaagagattcacAGATGAGGAGCAGGCCTACATAATCATCTCCCATatcaagacatcacgaagcctctacatcatgtgccacatcccaatcttttgctggatcactgctgcaGTTCTAAAGAAGGTGTTAAAGACCATAGAGGGAGGGGAACTGCCCAAAACTCTGACTGAGGTGTAtatccacttcctggtggttcagtccaaacGGAAGAACGTCAAGTTTCATGACAAACCTGAAACAGATCCACCCTGGAGTCCAGACACCAGGAAGATGATTGAGTCTCTGGcaaaactggcttttgagcagctgcagaaaggcaacctgatcttctatgaatcagacctgagagagtgtggcatcgatatcagagcagcctcagtgtactcaggagtgttcacacagatctttaaagaggagagtggaatgtaccaggacaaggtgttcagcttcatccatctgagtgttcaggagtttctggctgctcttcatgtccatctgacattcaccaactctggagtcaacctgctgtcagaaGAACAAACACCATCATGGCTGCCTAAAGTCTTCAGAGAAAAACCTAAACTAACACAgttctaccagagtgctgtggacaaggccttacagagtcgGAATGGACACCTtgacttgttcctccgcttcctcctgggtctttctcTAGAATCCAATCAGAATCTTCTACGAGGCCTgttgacacagacaggaagtagctcaCAGACAAACGAGAAAACAGTCaagtacatcaagaagaagatgaaCAGGGATATGTCTGCtgagagaagcatcaatctgttccactgtctgaatgaactgaatgatagtTCTTTAGTGGTGGAGATCCAACAGTACCTGAGATCAAGACGTCTCTCCAcagataaactgtctcctgctcagtggtcagctctggtcttcatcttactgtcatcagaagaagatctggacgtgtttgacctgaaaGAATACCGTGCTTCAGAGGAagctcttctgaggctgctgccagtggtcaaagcctccaaaaAAGCTCTactgattggctgtaacctgtcagagagaagctgtgaagctctgtcctcagttctcagctctgagtcctctagtctgagagagctggacctgagtaacaacaacctgaaggattcaggagggaagctgctGTCAGCTGGACTTCAGAGTCCACACTGTAAACTGGAGAATCTCAGtctgtcaggctgtctgatctcagaggaaggctgttcttctctggtctcagctctgaccgccaacccctcccatctgagagtgcTGGACCTGAGATACAATCAcccaggagactcaggagtgaagctgctttCGGATGGACTTAAGGATCCACTttggagactggacactctcagggtggagcctgctggagtcagatggttgacaccaggtctgaggaagtgtaagtgtgtttttcatttcattcatgggactgtgacatcactcattcaacCCTCTGATGCCTCTAGCTGTCCACTGGGGGCGCTTCATAGTGTGCGACCCAGTAGTCTCCCAgtcgttttgtttgtttttatcgtgtcttaaattgttttaaacctTGTTTTTAACTGTGGCGTGGGTGCGTATGAAAGAAATTACTTGTCAGTGTTTCAGCAATGCAGATTATGGGATTACTCGTGGAGCTTTTTGCAATTTTTTGCGTGTCAATGCTTCTTCTGGGATTTGCCAGTCACGCCGTAGGACATGGTGTATACGGGAAAGTAAGCCGTGAGCTTCTCCTGTCCTTACGGACTTCTACAGTGGGAACTGTATCACCGGGCATACCGATGGAACTTTGTAGGCCGTCTAAGTCGTCAGGCCATCGGAAACGAGGAAAAAGAGGTGGTTTGCGTCGGAGACTTAAGACTCTTCGGCTTGAAAACCTCCGCAAATTACAACCACTTCCTTCGGTCCTGTTGTCAAATGTACAGTTTATCAGAAACAAGATAAATGAGCTGGAAACATATGCCAAGTTTAAACGGGAAGTTCAAAACACTTGTCTCCTTGCCTTTACTGAAACATGGCTCGGTGATGCAAACCCGGACTCGGATCTTATCTTAACTGGGTTTGGAAGCCCAATTCGTATGGATCGGTCATCGAAGATCACCGGCAAGAATCGAGGAGGAGGCGTGTGCTTCTATGTGAACGAAAGGTACTGTAACACTGTCGTGATCAGAGAGAAGATATGTACCCCATATGTGGAATTGTTGACTATTTCTCTCCGTCCCTTTTATTTGCCGCGTGAGTTTCAACAGCTCTTTTACACAGTAGTGTACATTCATCCACGGGCCAATGCCTCAGTTGCTGCCCAGCTGATTGCTGACGTCACGCATAAACTGGACTCTATCTGCCCCGAGGCACCCAAGTTTATCCTTGGAGATTTTAATCattgcaatttaaaaaatacgTTGAGGACGTATGAACAGTATGTGACTTGTTCTACCACACAGAAGAACACTATGCTAGATTTATGCTATGGCTCAGTAAGCGGGGCTTATAAATCTCTGCCTATGCCTTCTTTTGGTGATTCTTACCATGGCAGTGTCTATCTTATGCCGGTATACAAACCATTTTTCAGGCGCCTAGAGCGGGAACAAAGGACAGTGAAAATCTGGTCAGAGGCCAGTAACTCCTCCATCCAGGCTTGCTTTGAGTGTACAGACTGGCAATGTTTTTATGAGGGTTGTGATGATAATAATGAACTTACAGACACTGTTTCATCATATATTACATTCTGTGTGGATTCAGTAATTCCTTCTAAAAAAGTGGTTATTTTCCCAAATAATAAACCTTGGGTGACCAAAGAACTTAAATCAGCcattaacaaaaagaaaagaatatttTATTCAGGAAACCCCCAGGAGAAAAAAGCGGCTTCCAGAGAAGTTAAGGTCGAAATAAGGAAGGCCAAATGGaattatagaaataaaattgaaaGTCTGTATTGTAGAGGGGACCTCAGGGCAGCCTGGACAGGTATAAAATCCATGGCATCAATTAATCAATCTTCCTGTAGGATCAAGCAGGTCATTCATGTAAATGGTGTGGAAAATGCAGACTTGGCAAATGGTTttaattctttcttttctcGTTTTGAAAGGTCTGATTTTGTGAATGATATCCCTAAAATGCGGGAATCTTTGGTTCCAGAGAATGGTCTAGTGATAACACAAAGTAATGTCACAAATCTTTTCAAGAAAGTAAACATACGTAAAGCTGCTGGCCCTGACTCCATCTGTGGACGCGTTTTGCGTTATTGTGCGGACCAGCTCTGTGAGGTGTTTACAACTCTTTTTCAGATGTGTATCGAGTGTGGTCAGATTCCTGCCATATGGAAAACATCAATTATAATACCTGTCCCTAAATCTAATAATCCAAGAGAAATGAATGAATTCAGACCTGTGGCACTAACATCACTAGTGATGAAAACTTTTGAGAAAATACTGAAAGATGAAATTGTCTCCTTAATCGATGGAAAATTAGATCCACTACAATTTGCCTATCAAGCTGGGAAAGGTGTGGATGACGCTAAGATTTTCATTTTAGATAGATTATATAAGCACCTCGAAAAACCTAAGTCACATGCAAGACTTTTATTTGCTGATTTCTCTTCAGCTTTTAATAAGATGCAGCCTCATATTCTAATAGAGCGACTGGCCTCTTATTTTAATCTACCTGATCAGATTTTATTGCTGCTCTTAAATTTCTTAACAGACAGACTCTTTATGGATTGTCTGTGCGGGACAAGAATAGACTAAGCAGTATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150923 lncRNA downstream 24575 3659776 ~ 3724882 (-) True G111946
XR_005640708.1 lncRNA downstream 28335 3718266 ~ 3721122 (-) True LOC120568342
TU150938 lncRNA downstream 47657 3675497 ~ 3701800 (-) True G111960
TU150880 lncRNA downstream 56955 3615146 ~ 3692502 (-) False G111935
XR_005640704.1 lncRNA downstream 56994 3691144 ~ 3692463 (-) True LOC120568339
XR_005640700.1 lncRNA upstream 39528 3800195 ~ 3803506 (-) False LOC120568335
XR_005640699.1 lncRNA upstream 39528 3800195 ~ 3802495 (-) False LOC120568335
TU150892 lncRNA upstream 42509 3803176 ~ 3821190 (-) True LOC120568335
TU150988 lncRNA upstream 207327 3967994 ~ 3969218 (-) True G111997
TU151003 lncRNA upstream 279217 4039884 ~ 4040197 (-) True G112007
XM_039815749.1 mRNA downstream 43287 3671550 ~ 3706170 (-) True LOC120568323
XM_039815751.1 mRNA downstream 116060 3629672 ~ 3633397 (-) True LOC120568325
XM_039816095.1 mRNA downstream 173236 3564546 ~ 3576221 (-) True LOC120568522
XM_039816973.1 mRNA downstream 292923 3448713 ~ 3456534 (-) False LOC120569104
XM_039815750.1 mRNA upstream 100662 3861329 ~ 3871815 (-) True LOC120568324
XM_039816101.1 mRNA upstream 123089 3883756 ~ 3889916 (-) True LOC120568530
XM_039817021.1 mRNA upstream 211665 3972332 ~ 3983995 (-) False proca
XM_039817022.1 mRNA upstream 211665 3972332 ~ 3983855 (-) True proca
XM_039816388.1 mRNA upstream 240774 4001441 ~ 4018262 (-) True saga
TU150514 other downstream 379518 3314646 ~ 3369939 (-) True LOC120568520
XR_005640646.1 other downstream 520310 3204287 ~ 3229147 (-) False LOC120568005
TU150424 other downstream 607587 2985332 ~ 3141870 (-) False LOC120568519
TU150430 other downstream 757611 2985332 ~ 2991846 (-) False LOC120568519
TU150296 other downstream 1171443 2573304 ~ 2578014 (-) True G111573
TU150904 other upstream 274875 4035542 ~ 4036963 (-) True G111942
TU151047 other upstream 477435 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 477435 4238102 ~ 4238670 (-) False G112043
TU151050 other upstream 477435 4238102 ~ 4238670 (-) False G112043
TU151054 other upstream 477435 4238102 ~ 4238670 (-) False G112043

Expression Profile