RNA id: XM_039815749.1


Basic Information

Item Value
RNA id XM_039815749.1
length 1238
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC120568323
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3671550 ~ 3706170 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGATCTCACAGCTCGTCCTTGTTTGGCCTCAGCTGCATCAGAGCGCCACTTCTCCCCAGGTTCACCAGAGGAAACACCACTGAACTAAATGCTTttcctcccagctgctgctctgtgctgtttcctACGCGCGCTGGCTGCCATGGCAACACAGCTGATTCAGGATGATTTAACATTGTCCAGGAGAGTTGGTGGATACGTCTCCTTCAACTGTCGAGGCACTGAGCAGTGTGACCTACCTTATGTATTCTGGTACcagaagagagacacagaaacattcaCACTGATTCTGTATATTAGGAGGGATACTGGTGTCATAGAGAAGGAGAGATACAATCATCCTCAGAAAGATGATTTCTCAGCTGTGAATATACAGAACGGCTGTAAGTTGCAGATCCAGAAGGTTAAACTCGATCATTCAGCCACCTACTACTGCTCCTGTTATAAGGATGTTCCccacaGGTACGGATGGTACTACATCTTTGGCTCTGGAACTACAGTGATTGTCACAGATGAGCCGGTAGTGAAGCCCGTGGTGAGCGTGTACCCAGCAGCATCCAGAGCCCACCTGGAGGGGAAGAGCGCCCTGCTGTGTCTGGCCTCAGCCATGTTTCCTCCTCTGGTCCAGTTCTCCTGGAAAAGACAAAAGGAGAATGGCCCTCTGGAGGAGCTGCCCCCTGTTGAGGGACAGCAGCTGGAGATCAGAAAGTCGGGATGCACCGCCTCCATCTTGTTGATCCACCAGCAAGAGAAGAGCAAATATAAATACCGCTGCAACGTCCGGCACGAGGGGGGAACAGTGGAGGCCGAAACAGAACAAGaGGTTTCTATTCTTCCACCATCACCAACATCTCTTCCACCAGCAACTTCTGTCCCGTCTCAGTACCTTAGTACAGTGGAGGCCCAAACAGTGGAGGCCCAAACAGAACAAGagGTTTCTACTCTTCCACCAGCAGCTTCTGTCCCGTCTCAGTACCTCAGTACAGTGGAGGCCCAAACAGTGGAGGCCCAAACAGAACAAGagGTTTCTACTATTCCACCATCAGCTTCTGTCCTGTCTCAGTACCAAGTGAAGCTGCTCTGTCTGATGTATACACAGCTGATAGTGAAGAGTCTGGTGTACTGCTGTGGACTCTCTCTGCTGATGATCCTCAGAAACAAGGGACCGTCCACCAACTGAACACATGCTGACTGACTGTTTTCTGCTCACCTTTTCTCGCAATCAAATCTCATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150918 lncRNA downstream 38151 3629565 ~ 3633399 (-) False LOC120568325
TU150888 lncRNA downstream 53122 3571974 ~ 3618428 (-) True G111935
TU150875 lncRNA downstream 53122 3592866 ~ 3618428 (-) False G111935
XR_005640698.1 lncRNA downstream 53136 3615179 ~ 3618414 (-) True LOC120568334
TU150928 lncRNA downstream 86024 3574579 ~ 3585526 (-) False LOC120568522
XR_005640708.1 lncRNA upstream 12096 3718266 ~ 3721122 (-) True LOC120568342
XR_005640700.1 lncRNA upstream 94025 3800195 ~ 3803506 (-) False LOC120568335
XR_005640699.1 lncRNA upstream 94025 3800195 ~ 3802495 (-) False LOC120568335
TU150892 lncRNA upstream 97006 3803176 ~ 3821190 (-) True LOC120568335
TU150988 lncRNA upstream 261824 3967994 ~ 3969218 (-) True G111997
XM_039815751.1 mRNA downstream 38153 3629672 ~ 3633397 (-) True LOC120568325
XM_039816095.1 mRNA downstream 95329 3564546 ~ 3576221 (-) True LOC120568522
XM_039816975.1 mRNA downstream 215016 3448713 ~ 3456534 (-) False LOC120569104
XM_039816097.1 mRNA upstream 41127 3747297 ~ 3751140 (-) True LOC120568526
XM_039815747.1 mRNA upstream 43287 3749457 ~ 3760667 (-) False LOC120568321
XM_039815745.1 mRNA upstream 43287 3749457 ~ 3760639 (-) False LOC120568321
XM_039815744.1 mRNA upstream 43287 3749457 ~ 3759584 (-) True LOC120568321
XM_039815748.1 mRNA upstream 43287 3749457 ~ 3759582 (-) False LOC120568321
TU150514 other downstream 301611 3314646 ~ 3369939 (-) True LOC120568520
XR_005640646.1 other downstream 442403 3204287 ~ 3229147 (-) False LOC120568005
TU150424 other downstream 529680 2985332 ~ 3141870 (-) False LOC120568519
TU150430 other downstream 679704 2985332 ~ 2991846 (-) False LOC120568519
TU150296 other downstream 1093536 2573304 ~ 2578014 (-) True G111573
TU150904 other upstream 329372 4035542 ~ 4036963 (-) True G111942
TU151047 other upstream 531932 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 531932 4238102 ~ 4238670 (-) False G112043
TU151050 other upstream 531932 4238102 ~ 4238670 (-) False G112043
TU151054 other upstream 531932 4238102 ~ 4238670 (-) False G112043

Expression Profile