RNA id: XM_039815753.1


Basic Information

Item Value
RNA id XM_039815753.1
length 390
RNA type mRNA
GC content 0.63
exon number 1
gene id LOC120568326
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3715566 ~ 3715955 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caatctgagctccggcggcagcgggaggtgGAGAGTTCCATAGCCGGCGGCAGCGTCTCTTTCCCCGAGCAGGAACACCACTTCGCCTCGCTactgcgccggtccccgctgatccagatcggacgggccaaagacagagtggttatcggcaggatcttccacatagtccaggacgacctgtatgtagATTTCGGATGGAAGTTCCACTGCGTTTGCCGGCGGCCGGCAGACGgagagaagctacagcggggcagcagagtccgtttgcggctgcaggatctggagctcactgcccgcttcctggaagccaaaaccgacaccacgctgctggaggcccgggccgtactgctgggacggctggagggaagggaagcccgggagaaccagaac

Function

GO: NA

KEGG:

id description
K17407 MRPS28; small subunit ribosomal protein S28

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150572 lncRNA upstream 55433 3659014 ~ 3660133 (+) False LOC120568521
TU150632 lncRNA upstream 56695 3655819 ~ 3658871 (+) True G111779
TU150618 lncRNA upstream 82271 3567972 ~ 3633295 (+) True G111768
TU150614 lncRNA upstream 121459 3519142 ~ 3594107 (+) True G111765
TU150620 lncRNA upstream 139728 3568733 ~ 3575838 (+) False LOC120568340
TU150638 lncRNA downstream 28022 3743977 ~ 3829859 (+) True G111785
TU150643 lncRNA downstream 76037 3791992 ~ 3841959 (+) True G111789
XR_005640701.1 lncRNA downstream 79844 3795799 ~ 3798340 (+) True LOC120568336
TU150645 lncRNA downstream 79868 3795823 ~ 3796232 (+) False LOC120568336
TU150647 lncRNA downstream 83847 3799802 ~ 3800698 (+) True G111792
XM_039816096.1 mRNA upstream 114994 3596415 ~ 3600572 (+) True LOC120568524
XM_039816094.1 mRNA upstream 163549 3540987 ~ 3552017 (+) True LOC120568521
XM_039815754.1 mRNA upstream 190451 3511629 ~ 3525115 (+) False LOC120568327
XM_039815755.1 mRNA upstream 209438 3491589 ~ 3506128 (+) True LOC120568331
XM_039814780.1 mRNA upstream 317460 3388054 ~ 3398106 (+) True LOC120567769
XM_039816100.1 mRNA downstream 87943 3803898 ~ 3807690 (+) True LOC120568529
XM_039815756.1 mRNA downstream 99865 3815820 ~ 3825434 (+) True LOC120568332
XM_039816709.1 mRNA downstream 220676 3936631 ~ 3949566 (+) True vcpip1
XM_039816475.1 mRNA downstream 243637 3959592 ~ 3964053 (+) True dusp28
XM_039816474.1 mRNA downstream 243638 3959593 ~ 3964053 (+) False dusp28
TU150599 other upstream 190517 3500679 ~ 3525049 (+) False LOC120568327
TU150598 other upstream 190517 3511653 ~ 3525049 (+) True LOC120568327
TU150236 other upstream 316383 3388094 ~ 3399183 (+) False LOC120567769
TU150165 other upstream 639665 3016958 ~ 3075901 (+) True G111494
TU150715 other downstream 372689 4088644 ~ 4137543 (+) True G111848
TU150718 other downstream 374553 4090508 ~ 4138933 (+) True G111850
TU150765 other downstream 549547 4265502 ~ 4326186 (+) True tmeff1a
TU150809 other downstream 783039 4498994 ~ 4539205 (+) False dnaaf11
TU150808 other downstream 811960 4527915 ~ 4529749 (+) False dnaaf11

Expression Profile