RNA id: XM_039815768.1


Basic Information

Item Value
RNA id XM_039815768.1
length 2702
RNA type mRNA
GC content 0.45
exon number 16
gene id ranbp3b
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 17999900 ~ 18019896 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCATCCTGACAATAATGATGATGCCAACTAAGCTATCTGTTTTCCAAAAAGATAAAGCACAGAAGCGAACTGCGGAGGGCTCAAGTGCAGAGGATGGAGAAGattcagatAAAGACGAAGGGAGCTATTGCCCCCCTGTGAAAAGGGAAAGGACGTCATCGTTCCCACCCCCACATTCTGTTCCCAAGAACAATGTATTCATGCCCTCAAGTTTCTGCCAGTCTCCAACTGGGAACTCTGACTCTGAGCCAGAGGAGAAGCCTGTAGGATTCCGTTTAAAGCCACCAACTCTCATACATGGACAGGCACCAAGTTCAGGCGTCCCAAGTCAGAAACCCAAGGAGCAGCAACGCAGTGTCCTCCGCCCTGCAGTTCTCCAGGCGCCGCCCTCTAAATCACATATAGAGTCCAATTCCAGTTGTGGAACCAACGGTGTGAAAAAGTCATCAGATGGGGCATCTGTGACCCAGTCCTTCTTCCTGAACAACACAGAGCACTCAGCCACCCTGGCCAAGTCACAGAAACATGAAAATGAGGAAGATGGAGCAAGTGGTAACAAAGACGGAGAcgaaagagagaagaaggagaCAGATGTAGCAATATCTTTTGTGTTTGGTCAGAATATTAAAGACAGAGCAAAGttGGAAGAGAACAGTACAGAAGGCAAGTCAAAGGATGGTGTGCCGCTGGACTCTCAATCAGAGGGCACTAATTATTTCTTACAGTACATCTCTACCCCAAGTTCAGAAAATGCCGCAAACAGTACAGACAGTGGGGCAAAATTTGTTTTTGGGCAAAACATGTCTGAACGAGTTCTGaGTCCCCCGAAGGGCGAGTCCTCAAATGAGGAAAATAAAGAAGTTTCTGCTGCCCCTGCTTCAGAGCCCTCATCACAGGAAACCACCCCAGAGAAGGTGAACAGCGTGTCAGAGTCTTTGGAGGAGTCTGCAGCAGCTTACACCAAAGCCACAGCCAAGAAGTGCATCTTAGAGAAAGTTGACGTCAAAACCGGAGAGGAATCTGAAAGCAATGTTTTGCAGATGCAGTGCAAGTTATATGTTTTTGAGAAGACGGCTCAGTCGTGGATAGAGAGAGGTCGAGGTTTGCTGAGGCTCAACGACATGGCATCAACAGATGACGGCACGCTACAGTCCCGTCTAGTGATGAGGACCCAGGGCAGCCTCCGGTTGATCCTCAACACTAAACTTTGGCCCCAGATGCAGGTGGACAAGGCCAGCGAGAAGAGTGTACGAATCACTGCCATGGACACAGAGGACCAGGGGGTCAAGGTCTTCCTAATATCGggTAGCTCTAAGGACATAGGTCAGCTGGCTGCAGCGTTACATCACCGTATCTTAGCCCTGAAGAGCAGGGCAGAGCAGGAGCCTGAGACCCCAACGACAACCATCCCCGATGCCGAGGTACCGCAGTCCAACGAGGACGACAGCGACGAGGAAGACAATGCCTCTGCCTCAGCTTCAGCCTCCACTCCTGCTACGAGTAattcagagggaggagagaaccAGGCAACAGGAAGCACATAGCGTCACTCTTGGACAGCCTGCTCAGATGCTGCCGTTGAGGCATTTTGCTGTATGCATCTCCATGGACAACCCTTGACCAACATGGGTCCTCCAGACCAGTACTTTTGGATATTAGAAGTCTAGCTCCAGGAAATAACCCCTTGTGCCAGAGTGTTCCACCCAACTCGTGCAGTTCATCTTCTCTGCATTCAGCGTAATATCTGGAGTCGTTTATTCCCTCCCTCtcctgttttgtgttttatttttgttttcgaGTATTTTTTCCTCTCCCCGATAGCAAAAATAAAGACTTCAAAGCTTTGGTTTGGGACTTTTCTGCTCATCATATTGATGAGTGTAAGGGTGTTTTCCTCTACATTTTAAAGTATGGCACATGTTAAGACTGCAGTTTCTACTTTGGGACCTTTTTACTCAATCTACAGCCGTATCTCTGGACGCCACACATCCAGAGGAGCTTCATTCACAGTGTATTTGACTAGTCATCAGTCACTTGTTCCTCCATTGAGTCCAACCCTCCTTCTATTCCCCATCCCAACCAGTCTGTGCGTTAGGTTTTggcaaatgtaatttattttggaTTGTCCGTTTCATGAGGCATCTCAACCCATATGTGCAGTTTGTAATGGCTAGCCAAGACCACTCAAGTTGTCATTAATAGCAGTTTCTTATATTTCCTATTGACCTATATTATAAAGAATAAAAGACTGAAAACAATGTGGTTTCTGCTAATGTGAGTTAATGATGTCAGGACAAAACAGAAGAATTCACCTCAAATATTTCTCTAAATTAATAAGATGTTTGTCATTCACCTTGTCggttttttaatgattttttttccaaatcaagAAACTTGACTCATCAGTCTCATTCTGCATGTAACtgttacttctttttttattcttttcagcATCCCAAAGGTTTACTGTGTtgatacatatttttattttgaaaatatacaaACATTTTATCCATTTTCCTTTGGAAAATATGTTTGAATGAAGACTTAAGTTGATGTGTGGAAAAATTTGAGTGATAACTCTAATACCCTTTGAATGTCATGTACATTTGAATATATCATTTAGTAGCACACCATGTTTTTCTCATCTCCTCCAAATACCCtctttacaaaataaaccatTTTGGACTGACATCTGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155934 lncRNA downstream 32208 17965813 ~ 17967692 (-) True G115624
TU155864 lncRNA downstream 391643 17607456 ~ 17608257 (-) True G115577
TU155850 lncRNA downstream 425775 17573463 ~ 17574125 (-) True G115570
TU155848 lncRNA downstream 426771 17572897 ~ 17573129 (-) True G115568
TU155842 lncRNA downstream 446950 17548220 ~ 17552950 (-) True G115563
TU155949 lncRNA upstream 33088 18052984 ~ 18058106 (-) True LOC120568693
TU155961 lncRNA upstream 55172 18075068 ~ 18076412 (-) True G115640
TU155962 lncRNA upstream 56644 18076540 ~ 18077059 (-) True G115641
TU155965 lncRNA upstream 61302 18081198 ~ 18083844 (-) True G115644
TU156018 lncRNA upstream 212972 18232868 ~ 18234515 (-) True G115691
XM_039814559.1 mRNA downstream 408535 17583790 ~ 17591365 (-) True cdcp2
XM_039815472.1 mRNA downstream 420325 17575306 ~ 17579575 (-) True tmem59
XM_039815473.1 mRNA downstream 428512 17567352 ~ 17571388 (-) True yipf1
XM_039815474.1 mRNA downstream 432854 17564711 ~ 17567046 (-) True zgc:113691
XM_039816891.1 mRNA downstream 435363 17555980 ~ 17564537 (-) True ndc1
XM_039816361.1 mRNA upstream 34662 18054558 ~ 18058159 (-) False LOC120568693
XM_039816601.1 mRNA upstream 40799 18060695 ~ 18070433 (-) True LOC120568865
XM_039816599.1 mRNA upstream 40799 18060695 ~ 18065107 (-) False LOC120568865
XM_039816602.1 mRNA upstream 41407 18061303 ~ 18070437 (-) False LOC120568865
XM_039816600.1 mRNA upstream 41407 18061303 ~ 18065108 (-) False LOC120568865
TU155671 other downstream 890996 17039800 ~ 17108904 (-) False ly97.3
TU155672 other downstream 954838 17043126 ~ 17045062 (-) True G115406
TU155670 other downstream 958424 17039800 ~ 17041476 (-) True ly97.3
XR_005640632.1 other downstream 1197636 16756331 ~ 16802264 (-) False epb41l3b
TU155525 other downstream 1360088 16637108 ~ 16639812 (-) True G115312
XR_005640621.1 other upstream 463260 18483156 ~ 18494488 (-) False sppl2
TU156258 other upstream 696986 18716882 ~ 18718544 (-) True LOC120568909
TU156342 other upstream 825009 18844905 ~ 18846277 (-) True G115941
TU156358 other upstream 912078 18931974 ~ 18935477 (-) True LOC120568972
TU156517 other upstream 1201895 19221791 ~ 19222726 (-) True G116084

Expression Profile