RNA id: XM_039815777.1


Basic Information

Item Value
RNA id XM_039815777.1
length 3277
RNA type mRNA
GC content 0.46
exon number 9
gene id gorasp1a
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12961268 ~ 12966562 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCGATGTTCGATTGTTTTGGACTGCAAACAAGATGGCCGTTGACTGTCAACCGTAATAATTCTCAGACAGTTGTTATTTTCTGATATCAGCTAATATTTGAAAGTTCCTGACAGAAATGGGTTTATCACAGAGTTCAGAAGTATCCGAAGGAGGAACCTATGGATACCATGTGCACGGCGTGCAGCCGAATTCCCCTGCAGAAATGGCCGGACTGCAGCCCTTCTTTGACTTCATTCTGTCGCTGGACAACAAAAGACTTAATGAGGAAAATGACCTGCTGAAGGAGCTTCTGAAAGCCAACATGGAGAGAGCAGTGAGGATGGAGGTGTACAGCACTAAAACCACAAGGGTCCGTGAGCTGGAGGTGGTGCCCAGTACCATGTGGGGAGGACAGGGCCTGCTAGGTGCCAGTGTTCGCTTCTGCAGCTACCAAGGAGCCAATGAGAATGTCTGGCACATTCTGGATGTGGAACCCAGTTCACCTGCTGCATTGGCAGAGCTTCAGCCACACAGTGACTACATTGTTGGAGCAGATCAAGTGTTGCAAGATTCAGAAGACTTCTTCTCGCTGATTGAGGCCCATGAAGGGAAGCCCCTGAAGCTGATGGTGTACAACACACAAACGGACGCCTGCAGAGAGGTGGTGGTCACACCAAATGGAGCGTGGGGCGGAGATGGCAGTTTGGGTTGTGGCATTGGTTATGGCTACTTGCACCGAATCCCAGCGCATCCTGATGTATCGACGGCAAAGCCTCCCAATCTGGTTCCCGAGGATAAACCCTCCCCAGAGCTGCCTACCCATGGATTCATGGAGGCACCATTGGTGGCACCTTCGAGTCAAAGTGAAGATGCGTTAGACCTGGAGCAGGTCACCCTCCAGGAAGCTCCTCTACCTCCACCCGTCCGGAGGGTCATGGACCCTGGTTTCTCAGACTCTGAAGGGGCAGTGGTGAACCCTGACCCTGCAGATTTGGCGGACAGACTGGATCTGTCCATGTCGTCCATCGACATGACCAACACTGCACTGGCTATGAACGAGGAGAAGGACGGGGAAATCTCTGGTGTTGAGGAGCTAGAGGACAGTGTTCTACTTTCGTCGTCAGCAGACAGCCAGACTGAGCCACAAGAGCTGAGCTCCCAGGCAGCCATGGACCTCACCTCTGCTCTCGCTTCCACTGACACTTTGTCTGATTCAGGCGTCACAACCGCTGAACCATCTCACCTGGTTACAGACCTACCTGGCTCTCTGTGTGAATCTAGCGATAGCCTGAGTTCCCCTATGCGTGAATTGTCTCTTCCCGTAGAGTCCCTAGAGTCTCCTGCTGAGCCCTCTGTCCCAGCTGAAGTCCCTCCCTGCCCGTCTCCTGTCGATCTCCTCCAGTCCTCTGCTGTCGATGAGCCAATGGCAGCCGATTCTCCTGCTCAGGCCATCGAGGATGCAGCAGGGCCAGCGGAGGAGCCTGCAGAGCCTCTAGATATGGCTCCCGCTCACCACTGCAGCCACGAGAGCGATGGGAACGAACCAGAAGAAGAGCCGCCTCTTGAGTAAGCTTGTATCAGGCCGTACAAAAATGCAAAGTGAAGTTGACAATCactggggctttttttttttaaagaaacactATAGGAACTACAGGACAGACACTAATAGTCTTACAAAAAGCATATGGCTCCTTCATCAGTTTAGTTACACTACAGAATCCAGGTAAAGCATTAGCATATAAGTAGAAAAATACTAAGACACTGTAGGACCAtcctatttgttttaaatgtgtgggAATTGAAAGTTACTGCTAATTTGTACACCAAGGTTATAATGTCATCAACATTTTTCCATGCCTGGTGCAAAATTAGATTATACGGGTGACAAGACTTTGCTTCTAGTACACTAATGTGATAAATACTTGAACACTTccaaagacaaacacatacatttacTACAGCAAAGCTCAGCTGCACCTTAATATCCACTACCCTAAGTTTTTGAAGCTACCAGACTGTTGGCAGTTCATATCAGTCGTCATAGTCTTGAGGTGCAGTGCTGCATCTGTTGTCTACGTGTTTCAAAGAACAAATGATtcccaaaatagaacttttaaAAATAACTTGCATATAGGATTATGAGAaggacatttttacagtagttTATGGCCAATGTATTGGATTTTTAAGTGTTGGTATGAGGAAATATTTGTGCATTTGTGCTGCGTGAAACCAGTCCAGTACAGGTTTTTACCCCAAATTTGATGAGGTCAATATGTTTTACACATCATCTTTTAAGCCGGGTTTCGACACAAGGATCTGGGGTCTTTTAAAGTCCCTCACCTCGAGAATAAAACAATAAGTGCCTGTCTCTACTAGATCATCTGTTGAGTCATggttatttatttgtgctttagaaagCAACCGCTGTAAAGCAAGCAATCAGCAAATATTTTGTATTTCACAGCTCCGttcttttgctctctctctcaccttcgCTCACTCGAGACGTAGCCAGCGTCTCTGCAGCCAATGCAGTTCAGTGTGGCGCTGGCAGCAAAGCCTAAATTTACTTTTAATGttatcaaacaaagagaaatgctCTCTCCTCTgtactttcttctttttatcaGTGAGTTGAAGCAGCAATGCGGTGTGTGTTTGACCAGTCAGCGATGGTCATCCATGCAAACCCTACCCCGAAGGTTCCTGTACTTTCAGAAAGTAGTTCCTACTGATCAGGGACTTTTTGGGGGGTAAAAAGGCTCAGAAAAATGTCACAGATCTAAATGTAGATCCTGGTCCCTGAGGTCGAGCGCAAAGAGTTCCTCGGATGATCCCTAGTTCTGGGGGAAAAATTCCTGTGGTCGAAACTCggctttttatttgatttattcagCCACGCAATGTTTGAAAACAATTTTTACTGTTTGTATCGATGGAATTATGTCCCCCATGTTTAATTCAACACTATATTTACTTTGTAATCTATGCAACAATAGACAAGTACTGCCTGTGGGTAGACAGGTAAGGTTTAAAGCCAATAGATatgtcatatacagtatgtgagaaGTCTGGTCAGAGTGATGCTGCTGTTGAGTAATTGTTTTCCAACTTTCTACGGGGCTTCTTAAAGTTTTTCACTGTCAAAGTAGGTGCAAGTGTGTAAAATAAGGTATAGTATTTTTGCAGATATTTTATCAATTGTACGTTTTATTAGGAATGAGTGCAGTATTTGTTGATGAATGTGAAATGGGTGAATCTTTGATGGTTAAACAATCATATCACTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153732 lncRNA upstream 47047 12913617 ~ 12914221 (+) False LOC120567760
TU153729 lncRNA upstream 54156 12906596 ~ 12907112 (+) False LOC120568152
TU153701 lncRNA upstream 86958 12861625 ~ 12874310 (+) True G113956
TU153671 lncRNA upstream 181870 12778340 ~ 12779398 (+) False G113938
TU153756 lncRNA downstream 44013 13010575 ~ 13074594 (+) False col6a1
TU153760 lncRNA downstream 60517 13027079 ~ 13028170 (+) True G114000
TU153769 lncRNA downstream 185537 13152099 ~ 13153594 (+) True G114008
TU153788 lncRNA downstream 216777 13183339 ~ 13186363 (+) False si:ch73-71c20.5
TU153799 lncRNA downstream 229699 13196261 ~ 13198734 (+) True G114033
XM_039816808.1 mRNA upstream 919 12952548 ~ 12960349 (+) True LOC120569010
XM_039814769.1 mRNA upstream 42070 12911439 ~ 12919198 (+) True LOC120567760
XM_039815465.1 mRNA upstream 54025 12901539 ~ 12907243 (+) True LOC120568152
XM_039815466.1 mRNA upstream 54026 12902528 ~ 12907242 (+) False LOC120568152
XM_039815467.1 mRNA upstream 59843 12888543 ~ 12901425 (+) True oxsr1a
XM_039815014.1 mRNA downstream 12531 12979093 ~ 13025931 (+) True LOC120567919
XM_039815017.1 mRNA downstream 12531 12979093 ~ 13025931 (+) False LOC120567919
XM_039815016.1 mRNA downstream 12531 12979093 ~ 13025931 (+) False LOC120567919
XM_039815018.1 mRNA downstream 12531 12979093 ~ 13025931 (+) False LOC120567919
XM_039815015.1 mRNA downstream 12531 12979093 ~ 13025931 (+) False LOC120567919
TU153737 other upstream 3912 12952580 ~ 12957356 (+) False LOC120569010
TU153451 other upstream 374105 12582642 ~ 12587163 (+) False ap1g2
TU153339 other upstream 801013 12157451 ~ 12160255 (+) False LOC120568189
TU153340 other upstream 801013 12157516 ~ 12160255 (+) False LOC120568189
TU153118 other upstream 1617577 11332597 ~ 11343691 (+) False pkia
TU153768 other downstream 148087 13114649 ~ 13117356 (+) False rpl37a
TU153770 other downstream 156493 13123055 ~ 13125463 (+) False ndufb3
unassigned_transcript_558 other downstream 251577 13218139 ~ 13218210 (+) True trnae-cuc_17
TU154336 other downstream 1320588 14287150 ~ 14295268 (+) False LOC120568245
TU154337 other downstream 1321793 14288355 ~ 14290960 (+) False LOC120568245

Expression Profile