RNA id: XM_039815788.1


Basic Information

Item Value
RNA id XM_039815788.1
length 5058
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC120568352
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 25376185 ~ 25557632 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acctcctcctcctcttcctccccctgcTCCTCGCACCCCCTCAGCCCCTACACTCCGCTCTTCCCCGGCGCTGATTGCCACACATTGTTTACTACGGCTTGAAATGTGACTCAACAACACAGGCTATCTGCTGGAGTACCGCTCTGACAACAGGGATTCTTTTGACGCGCACCGTGCGTCTTGGTTATTTGGGAAAAAAGGCTGTGGAGACTACCCCTTCTGCCATGACAGTGGATTTGTTTGCGCTTTTATGCGTGCTGGTCACCACGTCCTCTGCGATGGAAGAGACCGTGATGGACACTCGGGTGGCCACAGCTGAACTGGGCTGGACAGCGTATCCTAATTCTGGGTGGGAGGAGGTGAGTGGCTATGATGAAAACCTCAACACAATCAGGACCTACCAGGTGTGTAATGTCTTCGAGCCCAGTCAAAACAACTGGCTCCTCACCACCTTCATTGATCGGCGTGGAGCACAGCGCATCTATGTGGAGATTCGATTCACCGTGCGTGACTGCAGCTCCATCCCCAACGTCCCTGGCTCATGCAAGGAGACGTTTAATCTCTATTACTATGAGACTGACGCTGTCATTGCCACTAAAGGCACCGCCTTCTGGATGGAGGCCCCTTATCTCAAGGTGGACACCATTGCTGCAGATGAAAGCTTCTCGCAGGTGGACTTTGGCGGACGCCTGATGAAGGTCAACACAGAAGTGCGGAGTTTCGGCCCATTGTCTAAAAATGGCTTCTACCTGGCCTTTCAGGACTATGGCGCCTGCATGTCTCTGCTGTCAGTCAGGGTCTTTTATAAAAAGTGCCCAAGTGTGGTCCAGAACTTTGCAATCTTTCCAGAGACCATGACAGGGGCTGAGAGCACCTCCCTCGTAATCGCCAGAGGTATCTGCATTCCCAACTCAGAGGAAGTAGATGTCCCCATAAAGCTGTACTGCAATGGAGACGGAGAGTGGATGGTTCCTATTGGTAGCTGCACATGCAAGGCTGGGTTTGAACCTGACAATGGCAACGTATGTCGAGCATGCCCGCCGGGTACCTTCAAGTCAACCCAGGGTCCAGGTCTGTGTCTACAGTGTCCTCCGAACAGCCGTTCCACAGCTGAGGCCGCCACCATCTGCGTGTGCCGCAACGGTTATTACCGTGGCGATGCTGATCAGCCAGATGAGCCCTGCACAAGTGTCCCATCCAGCCCAAGGAACGTGATCTCCATTGTGAACGAAACCTCTGTGATCCTGGAGTGGCATTCTCCCAGGGAGACGGGCGGCCGCGGTGACGTCGTCTACAACATAGTGTGCAAGAAATGCCGGGCCGACCGGCGCTCCTGCTCCCACTGCGACGACAACGTGGACTTCGTCCCTCGGCAGCTGGGTCTGACTGACACCAGGGTGTTCATCAGCAACCTATGGGCTCACACCCTCTACAGCTTTGAGATACAGGCCGTCAATGGAGTCAGCAATAAGAGCCCGTACCCTGCCCAGCACGTCTCCATAGACATCACCACCAACCAGGCTGCTCCCTCCATAGTTCCCATCATGCACCAGATCAGCTCCACCATGAATAGCTTCACACTGTCATGGCCACAACCAGAACAGCCCAATGGCATCATCCTGGACTATGAGCTGCGCTACTACGAGAAGGACCATGCAGAGATTAACTCCACCATCTTGCGAAGCCAAACTAACACTGCACGCGTGGAGGGCCTCAGACCGGGTACAGTCTATGTGGTACAGGTGCGGGCCCGGACTGTGGCTGGCTTTGGCAAAGACAGCAGCAAGATGTGCTTCCAAACCCTCACAGATGACTTCAAGTCTGAGCTGAGGGAACAGCTTCCTCTGATTGCGGGGTCAGCGGCAGCAGGAGTGGTCTTTATTGTTTCCCTTGTCGCTATCTCCATCGTGTGCAGCAGGAAAAGGGCATACACCAAGGAGGCGGTGTACAGTGACAAGTTGCAACATTACAGCACAGGAAGAGAACTCTCTTTGCGAGCCGACATGTCTAACTGCCCCTCCCCACTGGGCTGCCCGACCCACTTCTCAGGCTCCCCGGGGATGAAGATCTACATTGATCCCTTTACCTACGAAGACCCCAACGAAGCTGTGCGAGAATTCGCCAAGGAGATTGACGTCTCCACTGTCAAGATCGAGGAGGTCATCGGCGCAGGTGAATTTGGGGAGGTGTACAAGGGCCGTTTAAAGTTGCCTGGTAAGAGGGAGATCTATGTTGCCATCAAGACCCTGAAGGCCGGCTACGTGGAGAAGCAGAGGCGGGACTTCCTGTCTGAGGCGTCAATCATGGGCCAGTTCGACCACCCAAACATAATCCGTCTGGAGGGTGTAGTCACAAAAAGCCGGCCGGTCATGATTGTTACAGAGTTTATGGAGAATGGTGCACTTGACTCCTTCCTCAGGCAAAATGATGGTCAGTTCACAGTGATCCAGTTAGTGGGGATGATGCGTGGGATCTCAGCTGGGATGAAATATCTCTCAGAAATGAACTACGTCCACCGTGACCTGGCTGCACGAAACATTCTGGTCAACAGCAACCTGGTGTGTAAAGTGTCTGACTTTGGCCTGTCACGCTACCTGCAGGATGACACCTCTGATCCCAGCTACACCAGCTCTCTAGGTGGGAAGATCCCAGTGAGGTGGACAGCACCAGAGGCCATCGCTTACAGAAAGTTCACCTCGGCTAGTGACGTGTGGAGCTACGGCATCGTCATGTGGGAAGTGATGTCATTTGGAGAGAGGCCTTACTGGGATATGTCCAACCAGGATGTGATCAACGCCATTGAACAGGACTACCGTCTGCCGCCGCCTATGGACTGCCCCAGTGCTCTGCACCAGCTGATGCTGGACTGTTGGCAGAAGGACCGTAACGTACGACCCCGCTTCGCCGACATCGTCAGCACCCTGGACAAGATGATCCGTAACCCCACCAGCCTCAAAGCTATAGCCAACATCCCCGCAGTgCCTTCTCAGCCACTGTTGGACAGATCCATACCTGACTTCAACACATTCAGCTCAGTAGAGGACTGGCTCGCCGCCATCAAGATGAGCCAGTACAGAGACAACTTCCTCAACTCAGGCTTCACCTCCCTGCAGCTGGTGGCTCAAATGACCTCAGAGGACTTGCTGAGAATAGGAGTGACCCTGGCAGGCCACCAGAAGAAGATCCTCAGTAACATCCAGTCCATGAGGGTCCAGATGAGCCAGTCACCCACGACTATGGCATGACTACAGGGGGCGCTGTGCCACGGAACGGGAATCATTCGCAGGACCAACAACAATGGCAGCCTTCGAATGACCCCCGATCCATCGGAACGCGCCAGAGTCGAGACTATTGTCTTAATCTAATCCACTACCATGACAACAGGAGACCAGGGTCTACACTACCACATGGTTAACACCAATCACACACTTCATGCAATCCACGCTAGGAGTTCAGGGTCCAGACTTGATACTGTTACTCCATTTTTCCACGAAAGGAAGACAGATATCAGTTGCTGTGGTTATGAACTGCCATTCCTGTCATTGTGAAccaaaataactccaacaaTCCGACATAGACACAGGGGATCTCTCACAATGTCAGACTGTATGGTTAAACGAGTGATATTGTACTTCTTTATTATCTGGACTAGAAGATGTTAAAATTGTAAACAAAAATGTGAGACATTTAGAAACAACGTGTGACCTGTGATTTTACCGTCGTCAATGTGTGCAATGAAGATGCCTTCACCTGGCCAGAAATAAGTCCCAGAATAAAAAGCAATTGCCAGTAGGAATAATTAGAAGGAGAAGAATACAGGGATGTACAGTGGAGCACCATTTTCAACTTTCACATCATCTTTTGCTCATTTgaagaatttaaaaaatgtatcgtaAAAGGACTGGTGAAAATTCAGAGCCAgttatatttttgtcttttatcatttgtttgttttctttgtttttatcaCTATAGCAAGATGCCGCCCACTTGTATTTTAACTTTAACACTACCTGTGGAGTCCTGAGTGAAAGGCCTTGCCAAAGGACTTCTTAACCAGCCCCACCCAGATTCAGAGAATATAAATATGTTTATCTCTTGCTAAATATgattatatctttcataataAACCTTCATATTGAAGGTGATATGTATGAATATGTATGTACAGAACTCTCTGCTTGCATTTTTGGCAAAGACATGTTTATTGACTAGATTGTGATAGACACATGCAATGTGTGGATTCCTTAAGGTGCCCTGGTTCCCTTCGACTGAACAACGGACACTGGGATATGCGTCTCCCTATTCTAGGCGCACAAGGACAATCCTGACAGAATCCTAAACTGAGGAAAACATTAAAAGGAATGGTGGGCAAAGGATTGGTATTGTAGATCTATATGAAAATTGCTGTAGGagttaaaataattgacaaaaTGTCCATTTATTGGAGATCATGTTTAATGTGGGTGTACACATGCTGTCTCTTGCTGGTGAGCACTTACTTGTACagatatgttttatgttttttatttctttttgtctgttgttgtttgtgttgggAGTGCTCAGAACCATCCAGAGGGGAAGGAAACTCCACGCATCAGCCGGCCCAAATCCATGACTGTGGATTCAAAGATTTACAcacatataaaacaaaacacacacttcaTGTCCACActtttacatgcacacacacacacacaccatggacACTTGGATTTGCTGTGGGCAGGAAGAACAGGTGAAATGGGACCTTTCCAGGATGCCAGTCACAACCTCCCCCTCTGGTACTCAATGGATGGTGGAGCTGAATATGAGTGTGCAAATGTCatagtttgtttatttgtgtgtgagagagagtgaatgTATGTCAGCGTGTGTGCATAGAGGACACAtttgtgtgtacattgtttaAGAAccgtttcctttttcttttggtTTCTGTATAGCTACCACTTGTAAATTGTGACTAGTACGTGTCAAGAGTTTGTAAGCTGTAACTTTCTGAGAACTATTGTACTAAAATGCACTCAATAAACGCCTTGGAAAACAAGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640686.1 lncRNA upstream 245256 25125831 ~ 25130929 (+) True LOC120568228
TU158635 lncRNA upstream 257683 25118231 ~ 25118502 (+) True G117704
TU158596 lncRNA upstream 332240 24987499 ~ 25043945 (+) False fgf12a
TU158548 lncRNA upstream 506098 24863027 ~ 24870087 (+) True selenot1a
TU158539 lncRNA upstream 537956 24837956 ~ 24838229 (+) True G117632
TU158801 lncRNA downstream 191803 25749435 ~ 25749788 (+) False LOC120568894
TU158810 lncRNA downstream 218259 25775891 ~ 25793954 (+) False LOC120568895
XR_005640804.1 lncRNA downstream 224543 25782175 ~ 25793191 (+) True LOC120568901
TU158824 lncRNA downstream 272132 25829764 ~ 25830695 (+) False G117829
XR_005640803.1 lncRNA downstream 314697 25872329 ~ 25873402 (+) True LOC120568900
XM_039815908.1 mRNA upstream 22402 25281304 ~ 25353783 (+) True LOC120568394
XM_039815596.1 mRNA upstream 113844 25140737 ~ 25262341 (+) False gpc5c
XM_039815593.1 mRNA upstream 113844 25153166 ~ 25262341 (+) True gpc5c
XM_039815594.1 mRNA upstream 113844 25153166 ~ 25262341 (+) False gpc5c
XM_039815404.1 mRNA upstream 262383 25085974 ~ 25113802 (+) True LOC120568127
XM_039816641.1 mRNA downstream 185695 25743327 ~ 25773468 (+) True LOC120568894
XM_039816642.1 mRNA downstream 216145 25773777 ~ 25777677 (+) True LOC120568895
XM_039816643.1 mRNA downstream 250389 25808021 ~ 25811280 (+) True LOC120568896
XM_039816728.1 mRNA downstream 373909 25931541 ~ 25944450 (+) True acsl3b
XM_039816730.1 mRNA downstream 402174 25959806 ~ 25963171 (+) True scg2b
TU158583 other upstream 421938 24950568 ~ 24954247 (+) True G117664
TU158470 other upstream 700432 24667893 ~ 24675753 (+) False LOC120569045
TU158471 other upstream 700432 24673924 ~ 24675753 (+) False LOC120569045
XR_005640839.1 other upstream 1321481 24049764 ~ 24054704 (+) False LOC120569114
TU158802 other downstream 197461 25755093 ~ 25755890 (+) False LOC120568894
TU158814 other downstream 218259 25775891 ~ 25793954 (+) False LOC120568895
TU158825 other downstream 272423 25830055 ~ 25830695 (+) True G117829
TU158989 other downstream 658095 26215727 ~ 26217041 (+) True LOC120568800
TU159070 other downstream 837794 26395426 ~ 26402078 (+) True G118011

Expression Profile