RNA id: XM_039815796.1


Basic Information

Item Value
RNA id XM_039815796.1
length 3394
RNA type mRNA
GC content 0.45
exon number 22
gene id dtna
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21848903 ~ 21869956 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGTGATTTATGAAAGAATGATTGAAGACTTCGGGTGGAGTGGTGACAACATGGCAGATAGAAGGCAACTGTTTGTCGAGATGAGGGCTCAAGATTTGGACTCCATACGATTATCGACCTACAGAACAGCCTGCAAACTTAGATTTGTTCAGAAGAAATGTAATTTGCATTTGGTTGACATTTGGAACATCATCGAGGCTTTCCGAGAGAACGGCATCAACACCATGGACCTCAACGGCGAGCTCTCAGTGGCTCGTTTAGAAGTGGTGCTGTCCACCATTTTTTACCAGCTAAACAAGCGCATGCCCACCACCCACCAGATCAACGTGGATCAGTCCATCAGCCTGCTGCTCAATTTCCTGCTGGCGTCCTATGACCCGGAGGGCCATGGCAAGATATCTGTCTTTGTTGTGAAGATGGCCCTAGCAAccatctgtggagggaaaatcCTGGATAAATTAAGATATATTTTTTCACAGATATCAGATTCAGCGGGAATAATGGTGCACTCGCAGTTCGACCAATTTCTGAAGGAGGTTCTCAAATTACCCATGGCGGTTTTTGAGGGACCTTCTTTTGGTTACACTGAACAAGCTGCAAGAACGTGCTTTACACAGCAGAAAAAGGTCTCCCTCAATACATTCCTCGATACGTTGATGTCAGACCCATCCCCTCAGTGTCTGGTGTGGTTACCGCTCATGCATCGGCTCGCTAACGTGGAGAACGTCTTTCACCCGGTCGAGTGCTCCTACTGCCATACTGAGAGTATGATGGGCTTCCGCTACCGCTGCCAGCAATGTCATAATTACCAGCTCTGTCAGGACTGCTTCTGGAGGGGGCATGCCAGCGGTTCCCATAGCAACCAGCACCAAATGAAGGAGTATACGTCATGGAAATCTCCTGCTAAGAAGTTATCCCATGCCTTCAGTAAGTCCCTGAGCTGTGCGTCCAGCAGAGAGCCTCTTCACCCCATGTTTCCCGAAATGCCAGACAAACCTCTCAACCTAGCTCATATTGTGCCACCAAGACCAGTGAACATCACCAATGACTACTCACTCTCCCACTCCATGCCTACATCAGGGAACCCTTACTCCACCAAAAACAAAAATAATGATGTTGGGCAAAGAAAGCCCTTCGATGGGGCTGCTCCACATTTGTTGAAAGGGAGAGGGTTGAACTACAACCTTGATGTTGCCGATAGACTTGCAGACGAACATGCTCTGATTCGCCTCTATGTGAATCTACTCCAAAACAACCCCAGATCATGTTTGCTGGAGAGCAGTAACCATCAAGAAGAAGAGCACAGTCTCATCGCCCGCTATGCTGCTCGACTGGCTGCTGATGCTGCGGCTCAACAGCAGAGAATCCCCACAGACCTCCCATACTCTCTGGATGCCAACAAACAACAGAGGCAGCTCATTGCCGAGCTTGAGAGCAAAAACAGAGAAATCCTACAGGAAATCCAGCGGCTGCGCCTTCAGCATGAGGAGGCCTCCCAGCCGCCACCTGACAGGGGTCAGCAGAACCCCACTCTTCTGGCTGAGCTACGACTTCTCAGGCAACGCAAAGATGAGCTTGAACAAAGAATGTCTACTCTGCAGGAGAGTCGCAGGGAACTCATGGTGCAGCTGGAGCAACTAATGATGCTTCTCAAGACTCAGGGTCCCGGCTCTCCACGCTCGTCCCCCAGCCACACCACCAGCCGGCCGATCCCCACCCCTATCCACTCGGAGTCTGCCGGCACGACCCCGACTCACACACCTCAGGACTCACTCATGGGCGTGGGAGGGGATGTTCAGGAGGCCTTCGCTCAGTgTCCAAGGAGAAATTTGAGAAACAACCTACTCATTGCTGCTGACTCCATCACCAACACAATGTCGTCACTAGTTAAAGAACTCAATTCAgagGGTGGAAGTGAGACTGAGAGCACTGCAGATTCTGACTTTGGACGTGGTGACCTATTGGCCACAACCTCTTCAGATCCCTTCTTCACATATAAACCAAGGAGTtccagcgctgcagaggaggagagCTTTGAGAATGATCTGGAGCAGCGGCTGGAGGATGAGCTCAAGTTGGAGGAGCTAATAAAGCACAGGCAGGAACCAGACAAATCGTGCATGGTGACGCTGCAGCAGTGACTGTGTTAGTCCAGATGACTGGTGAGCAATATGAAAAGCAACAATAGTAGAAGACACTGGATGAGACGACACTGGGCCGACGGTACAGAGCACTGAAGATATGAAGAATTTAAGTTGAATAAATGGCTGAATCCAACCATATAATACATCTTTGTaaagatatattttttaacCAACCTCATATTTAAGGTAATACTGTGAGCTGATGTAAAGAGATTAATTAGTGAGCTGTCTATTACACCACAGGTGCCATAAAATCCACATGACTTTGGGGAATTATTTCTTAATTTTTAGCCTTTTTGAATGAGTTGTCAAGCAAATGTACAACTACACTGAAAGTTCAGGGTGGCAAACCTGATTCTTTCAAATTCTCATGTTTCTTCAAACAGTGAACCTTGTTTAAgtgtttgtttgtcttctgATTTAAGATATAAACCTGCGTTGGAGTTGAAGCTATAGATGATAAAATTTGCaatattttataaatgtataaCTCCAGATTTAACCACTAGTCCATAGATTTCTTACTGTTGCTGTCGAGTggcttttgtattgttttttgacTTGTGTTCGGAGCAGGccgagtttttttttattttttttttttattgatacaTTAGTGATAATAATGCACACATGccttagctgattggatgaccTCTCAAATGAGCTCATTCAAACTGTCAACGCAGCATGTAgctaacaacaaaacacacctgTTCAGCAGAAATGCTAGTTGTCTTCACTGGAGGTTAAACTCATTAAATCTGGTGCTGGGAAGTGATTTTGTCTGCAAATATGTACACTGTCTACATATAAACTGTCACTTAAAAACAAGATATAGATGGATTGGTTCTGACACCTGGAAGTGTTTTAAGATTCGGTGAAAAAGATATAACACAGGAACTTCCAAATCACACAAATTCAAAGGTTTACACTGGTGAGGGCATTGAACAAGTTGTGTTTACTATCGATGGTTTATGAATAAGGTTTGATCGTTTAccattgtttaatttgttagcgtcaatgctctcacacacaaattGCTGTGTGACCTGCACACCAAACATGCACACTCTTGATGCATTTTCTGAATGTGCGTGAAACTTTACTCAGTCACttttggaaaaagtggcaagCCAATCTAAAATCATAAATGTGTGAAATATATCTAGTTTGATTTTTGAGCAAGTTCATAGCAGTGATTTTGCATGGTGGTGATGCATAATAAAGTGTTGACACAATATCACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157461 lncRNA downstream 37757 21810862 ~ 21811146 (-) True G116832
TU157375 lncRNA downstream 188436 21658679 ~ 21660467 (-) True G116758
TU157354 lncRNA downstream 253597 21592739 ~ 21595306 (-) True G116743
TU157296 lncRNA downstream 548821 21297415 ~ 21300082 (-) True G116692
TU157207 lncRNA downstream 639130 21208742 ~ 21209773 (-) True G116651
TU157550 lncRNA upstream 129846 21997794 ~ 22002858 (-) True G116893
TU157587 lncRNA upstream 310345 22178293 ~ 22178534 (-) True G116922
XR_005640797.1 lncRNA upstream 314016 22181964 ~ 22205991 (-) True LOC120568857
TU157630 lncRNA upstream 327376 22195324 ~ 22200980 (-) True G116954
TU157760 lncRNA upstream 761948 22629896 ~ 22632268 (-) True G117052
XM_039815195.1 mRNA downstream 1537 21834514 ~ 21847366 (-) True mapre2
XM_039816222.1 mRNA downstream 15288 21798956 ~ 21833615 (-) True spidr
XM_039816752.1 mRNA downstream 54300 21785299 ~ 21794603 (-) True mcm4
XM_039816673.1 mRNA downstream 65012 21767121 ~ 21783891 (-) True ube2v2
XM_039815506.1 mRNA upstream 120864 21988812 ~ 21994173 (-) True rpe65a
XM_039815512.1 mRNA upstream 136891 22004839 ~ 22015846 (-) True LOC120568177
XM_039815513.1 mRNA upstream 149357 22017305 ~ 22025067 (-) True efcab14
XM_039816579.1 mRNA upstream 342639 22210587 ~ 22220681 (-) False LOC120568852
XM_039816580.1 mRNA upstream 342874 22210822 ~ 22220682 (-) False LOC120568852
TU157096 other downstream 838334 21008049 ~ 21010569 (-) False higd1a
TU156767 other downstream 2053194 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 2383523 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 2626177 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 2913426 18931974 ~ 18935477 (-) True LOC120568972
TU157655 other upstream 394050 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 395175 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 1562418 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 1600672 23468620 ~ 23491612 (-) False LOC120568062
unassigned_transcript_560 other upstream 2000004 23867952 ~ 23868025 (-) True trnai-aau_23

Expression Profile