RNA id: XM_039815807.1


Basic Information

Item Value
RNA id XM_039815807.1
length 3279
RNA type mRNA
GC content 0.43
exon number 20
gene id LOC120568354
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21870953 ~ 21897391 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATTGACAGTAAGTTGCAACTTCAGTTGATTCATTTGGAGAAAACtttaataaaagtcaacttttTTTACAGGTCAGCTGCAGCGTCGTCACTCAGAAGAACAATAACAAACTTcaagatagctagctagctaaatagcTGGCAGTCAAAGGTGTATTAATACAAGTTAGCTAATGTTGAATGTCATCGGCTCTACGTTTCCACACGACGGTGGAGTTTAAACTGGTGATTTTTCCCCATCGGACAAGTTTCAGCGATGCCAGACGTTGAACCGCTTAGATTCCCATCAAGGGAAGGACGACCTAGTCAGCAAGATCAAGCAGATCTTCAAGCGGTCTGCTCTGGTAGACGTCGCACTTGTGCATTGCTCAACAGTCCCTCGCCATGTGTCAACAATGCCATTTACCATATCCAAGAGCTGAAGATGACAGTGGAAAATTGGTGTCAACAGCCTGGAAAATATCAGCCACTGATCAATCAGGACAAGCACCAATACCGTAAAACTTTAAGATATCAGCCCAGAGACTCAGATACTGAATCAGTGACGTCTACGGAGTTGTTCGTCGAAGGCATCGCAATTAGTGCAAGCGAAAGTTGTCCTTTATCGCCACTATTGAAGAAGATAAATGAAGTCCTTGGAGAGGTTTTGTATCTGATTGAGCGGCTGGAGGCTGATCGGCAGTATGCAGAGGAAGCTCTCcacaaagagaagagaagaaaaagatttTTGGAGAACAAAGTTGacagtatttcactgtggaAGCAACAAGAGCACTCTTTTGTAGTCCAAAAAGAGCACGAAGCTTGCATTAGAGACATCACTGAACTAAAGTGGCAGCTCAAACTGGAAAGAGAGAAACTTGACCAAGCCCAGGAGAAACTTTCACACACTGAAGTGTTGAACCAGACCTTACATGAGGACATTAACTTTGCCAAAAAACAAATTCCCATTGTGAATGAAAACCTGGCCCTCCAGAGAGGCATCATAAATCAAATCAACACTGCACAAGCTGAGGCTGATGAAGTATactcaaaaacaaaaagtgattTCAAACTGGTTCAGAATGAGTTTAAAAAGATGGAGCTGGAGACCAAAAAGGAAAAGATATCACTGGATTATGCACTGTTGGCGGCGAAGACTCTGCTGGCTAACAGATTGGAAGAATTAAACCAGTTGAAGAAGCTTGAGGAAGGTCTATTTGCTGAAATAAAGGATGCTGAAAAGACGGTTGCTCTTACAGAAGAAAGGTGCGCGGCCACAACACAACGTATCCCTGAAATGATTGAGCTCGAAGAAACTCAAAACGCCCGGATTTTGCAATTGAAACTTCAAATTGAGGATGAAATGCGAAAGATTAAGAAATTAAAAGAGAAACTGATTGCACAGCAAGAAGACATTGAGAAAACTAGACTTCATGGGGAAGCAGAGGTTTCCTGCGTAGAAGAGCAGCTCCGTTCAAAGCGTAATGCTTATGCAGCTCTTCGTAAAGAAAACATGGAGTATGAACAGAATGTAGAAGACCACAAGATAAAAATGTCTGAGAGCAAGAAGGCAGTGAAGCAGATGCATGAGGAGAGGAAGCAGATGCTCCAGAAAATCATTGACAATGACGAGCAGTGGGAAAAGGCCGAGGAGGAAGTGACCCAAGTTGTAGCCAGGCACAGTGTCACCCAGACTAAACTGGAAGAGCAGGAACAGCTCACCTTCATGGAAGAACAGAGAGCCAGGAaagagattgaaaccctgaggAAAGATCTGACAGGTCAGATGACTGCCCTGGAACTACTGAAGGGTCAGTGtgcaaataaaaatgaagaATTGTTTCGACAGCAAAGGAGCTCAGAGCTAACTAACCAAACACTTCAGAAAGAATTTGAAGATGCATCCACAGCAACTAAGGAATTGGAGACACAAATTGAGAAAATCAAGAAATTGAACGAAGATTTGGAAAAGATTCAGCGTGAACACGGAAACACATTAGTCAACCTTGAGAAGGAGAAAAAACTCAAATGTGACCACCTGAAAGCTGCTCagGATTTACACACTGCCACTGTAAAGAGATATGACAACACCCTGGCCAGGATCAGTGGCCTTACAAAGAAGAGCGAAGAATACCAGGTTGCTTCAgataaaatggaaaaaatagtTGAAAGCATGCCAGAAGCCATAGCAGAACTTCAAAGTGTTTTTGATGTGGTGGAATTCAAAAACAAATCAGCTGCTCTTATAATGAGCACCTTGCAGTCTGATATTAATAACTGCCAACTACGAACACAGCGAtccatgcagacacacactgcTCATCTTACAGCgagaaaaaaggaaatggaAGACACCAAGGAAGCATTACAAATTTCACTGAAGGAGAACAAACAGCTGGCAAGCGACTACGAAGATCTTAAGAAGATCCTCATGGAGGCCAAACAAGAGGCAGTGTCTGCATTGAGCAAGAATAACCATACACATAAATCTTTTCATTATTACACACAGCTCTCTTTGTTGCAGAAGAGGATGCACAAAGCTTTGGTGAAATACTTCAAACAACGCAGCCTCTACAGCCAGGCTGAACTGGACCGATGCCAGGCTCTTTCTCATGAGACCGaccagaaaataaaaacagcccAGGAGGGGTTGTCAGCAGAAATTCAGCTCATCTGTGCATTCCTGCAATCCTTGACAGATGACTCTACTACCATTGAAGATGCCGGGGTGAACAAACAAGTCAGTCCAGGATCGAATGAGTAGATGCCTTCAGTTCAAAAAGCAGTGTAATTGGACATTCACCTGTACCAGACAACTTACTTACCCTAGCACGCTTCACTATCCCCCCCCTCTTTACTTGCAGCGAATCCATAACAATGAAACAGGTGACTTTCATGCTGCTGTCAGGACTGATCTAATTTTAGCTGGGTGAATGATTGCAATTGGCTTTGCCTCATCAGATAATTAATCTATGTCACCATTAATTGGAAAAGAGAATAATTACAGGCAGTGTTGACAGAAATTCTACGCTTCTCCAGATTTCAAGATCTAATTACAACTAGTGAAACCCTGTGACCTTAACTAGCACTTAGCACACCTTGGCCACCTTGACCATGCCCATGTGAAGACCACTGTCTCTTGAAAGACCCTGTTTTTCTTACCGCTCCCCGCACTCCTCCACTCTCTGAGAGCTGTCTCCCTCAATCACTTTTCAATATTCAATCTTAATTTTGTGGAAGTTTAGCATTTTCAATGAGCTGGAGATGAATGATTAATGAATAAAtttaaatgcttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157416 lncRNA upstream 32201 21834466 ~ 21838752 (+) True G116794
TU157417 lncRNA upstream 34606 21834466 ~ 21836347 (+) False G116794
TU157363 lncRNA upstream 208483 21614100 ~ 21662470 (+) True G116746
TU157330 lncRNA upstream 370559 21454330 ~ 21500394 (+) True G116723
TU157251 lncRNA upstream 544690 21270751 ~ 21326263 (+) True G116657
TU157508 lncRNA downstream 42387 21935519 ~ 22020278 (+) True G116857
XR_005640669.1 lncRNA downstream 131981 22025113 ~ 22036950 (+) False LOC120568180
XR_005640667.1 lncRNA downstream 131981 22025113 ~ 22035741 (+) True LOC120568180
XR_005640668.1 lncRNA downstream 131981 22025113 ~ 22035741 (+) False LOC120568180
TU157612 lncRNA downstream 341687 22234819 ~ 22236599 (+) True LOC120568856
XM_039815194.1 mRNA upstream 72099 21797438 ~ 21798854 (+) True cebpd
XM_039814536.1 mRNA upstream 161310 21707253 ~ 21709643 (+) True snai2
XM_039815402.1 mRNA upstream 210445 21648818 ~ 21660508 (+) True pcmtd1
XM_039815403.1 mRNA upstream 210445 21648818 ~ 21660508 (+) False pcmtd1
XM_039815401.1 mRNA upstream 228457 21611033 ~ 21642496 (+) False st18
XM_039815812.1 mRNA downstream 6436 21899568 ~ 21916897 (+) False klhl14
XM_039815810.1 mRNA downstream 6445 21899577 ~ 21916897 (+) False klhl14
XM_039815811.1 mRNA downstream 7589 21900721 ~ 21916897 (+) True klhl14
XM_039815808.1 mRNA downstream 8306 21901438 ~ 21916897 (+) False klhl14
XM_039815503.1 mRNA downstream 28519 21921651 ~ 21982046 (+) True cacna1eb
TU157037 other upstream 955665 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 1495320 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 2354008 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 2852227 19017058 ~ 19018726 (+) False LOC120568770
TU156233 other upstream 3196891 18672562 ~ 18674062 (+) False LOC120568691
TU157733 other downstream 714932 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 748378 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 1783947 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 1957747 23850879 ~ 23855157 (+) True G117319
unassigned_transcript_561 other downstream 1975122 23868254 ~ 23868325 (+) True trnaw-cca_13

Expression Profile