RNA id: XM_039815810.1


Basic Information

Item Value
RNA id XM_039815810.1
length 3630
RNA type mRNA
GC content 0.45
exon number 10
gene id klhl14
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21899568 ~ 21916897 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAACTTGTGAGGTATCTGTCACTTCTGGTCCCAAAGGAGTCCTGTATAAAGCACAGctccctctcacacactcacacacttctTGTTAATTCAGAAGAACAAATGATCAACGTCAACAAATAACCTGAAATAGTGACTTTATGAGTTGGAATCAATGGTTATTTTGAGACACCACCGACCATAGACTTTAAAGGAAAGGACATTTTCTTAAAAGGAGAACAAAGGAAAAATTCAAGTGAGAATATTGGGAACCCGAagcttactttctttttttttgtcaagagCTGAAGTCAGGTGGCGTTCACAGTCAGGAAGTCATGTCCAGATCGGGTGATAGAACATCCACCTTTGACCCAACACACAGTGACACCCTGCTGCACGGGCTCAATCTCTTATGGAGAAAACAGCTTTTCTGTGATGTGACTCTCACTGCCCAGGGACAGCAGTTCCACTGCCACAAAGCTGTGCTGGCATCCTGCTCCCAGTATTTCAGATCCCTCTTCTCTTCCCACAATGTTATCAATAATGAGGGGAGCAAAGGGGACCAGGGCAGCAGTGGGACCCCCTCATCCTCACCTGATGACAAGCTGGTGACCCCTAGCGCCAGGCCCATCAATAACCTGGTACTCCAGGGCTGCTCCTCCATTGGACTACGATTAGTGCTGGAGTACCTGTACACTGCCAATGTGACTCTTTCCCTGGACACAGTGGAAGAGGTGCTGTCAGTCAGCAAGATCCTCAACATCCCCCAGATTACCAAGCTCAGCGTGCAGTTCCTCAACGACCAGATCTCTGTGCAGAACTACAAGCAGATCTGCAAGATTGCTGCACTCCATGGACTAGATGAGACCAAGAAGCTGGCCAACAAGTACCTGGTGGAGGATGTGCTGCTGCTGAACTTTGAGGAGATGTGTGCCATGCTAGATGCTCTGCCACCCCCAGTGGAGTCAGAGCTGGCTCTATTCCAGATGTCAGTCCTCTGGCTGGAGCATGACCGCGAGACTCGCATGCACTATGCGCCGGACCTTATGAAGAGGCTGCGCTTCGCCCTCATACCTGCTCCAGAGCTGGTGGAGAGGGTGCAGTCTGTTGACTTCATGAGGAGTGACCCTGTGTGCCAGAAACTACTCCTGGATGCCATGAACTACCACCTGATGCCCTTCAGGCAGCACTGCAGGCAGACCACGGCAAGCAGAATCCGTTCCAATAAGAGAATGCTGTTACTGGTGGGTGGTTTGCCTCCTGGACCTGATCGCCTCCCCAGCAATTTGGTCCAGTACTATGACGATGAGAAAAAGACATGGAAGATCCTCACAATAATGCCTTACAACAGCGCCCATCACTGcgtggtggaggtggagaacttcctgctgctgctgggcgGAGAGGACCAGTGGAACCCCAATGGAAAGCACAGCACTCATTTTGTCAGCCGCTATGATCCCAGATTCAACAGTTGGATACAGTTGCCTCCTATGCAGGAGAGGAGAGCCAGTTTCTTTGCCTGCCGCCTGGATAAGCACCTGTATGTGATTGGTGGTAGGAACGAGAGTGGCTACCTCTCCAGCGTGGAGTCCTACAACCTGGAGACCAACGAGTGGAATTACGTTTCATCTCTGCCGCAGCCTCTGGCTGCCCATGCAGGAGCCGTGCACAACGGCAAGATCTACATATCAGGAGGGGTGCACAATGGGGAGTATGTGTCCTGGCTCTACTGTTATGACCCTGTAATGGATGTGTGGGCGAGGAAACAGGATATGAACACAAAGCGTGCCATTCATGCCCTGGCTGGAATGAACGACCGCCTATATGCTATTGGTGGAAACCATTTGAAAGGTTTCTCCCATCTAGACGTAATGTTGGTGGAGTGTTACGACCCGAAAGCTGACCAGTGGAACATCCTGCAGACACCCATCCTGGAGGGCCGCAGCGGCCCGGGCTGCGCTGTCTTGGATGATAGCATCTTCCTCGTGGGCGGCTACAGCTGGAGCATGggGGCCTATAAGTCTTCTACCATCTGCTACAGCCCAGAGAAAGGAACATGGACAGAGTTGGAGGGAGAGGTGGCAGAGCCCTTAGCTGGCCCAGCCTGTTCCACTGTCAtactgcctgcctgccttcccTTTAACAAATGACAACTAATCCAACCGAAGGGCGGTAAGGGTGTGGACCAGGAGCGTGAATGGAGGGAGGACCATCAATAAGCAAAACAGTTGTTAAACAATTTTCTGACAAACCCTCCGGTCAGATGACTGGGGTGtgtataaattatttttttacaggttTGACCAGAGCACTTTCGTTATTCCCTACTGAAGgtttgaaaaaaagaattgtgTAACTCATGTATTTAATCATCTGTGTTCTGAGAAATGGTCAGTttcatatttgatttgatttaaactGATAGTAAGTGTTTTTGGCTTCTCTTCTATAGCACGCATAGTGTTGAACTGAATTATAGCTTTCAAATCCATTGTATCTTGTATTCAGTAGAGGCATAATTCCATCAAATGCAGTGTTGTTTAATGGACTGACGCTGGGAGAAAAGGTGATCAGTCCCAAATTGTCATCATGGGGTTAAgttaaactagggctgggtgagTTACATTAACAATGGTGATCAAAGCGTATACATATTCTTCATCACTCATGTTATAACTCACTTCTCTCTGGCTGGATTGTGCACTTATCCTGCTGTTGAATCATTATGCAACTTTTTTGCTGTCTTTCTCAAAAAAATTAACATATTTACCTGTCTAAAATGGCGACATTTTCAGAAACTTTTCCTTACTGCAGTCATTATTCAGCCGACAAAAAATAGTAAAAGTAACTAGACCTGCAAGCAGGTATACCGGGTCCAAACACAAGCAGGAGAACGTTGTAAAAAAGACACAACAACGCAATGATCTTTGTGAGGATATGTCCATGtcacccagccctaatttaCTGTATAACTAATTATCTTAATCATTTACACCCAGACTGAAGTCGTGTTTCTGTATAACTTGACAGAAAAAATCTTGCCAAATGTTTGTGGCAATTATTCTTCATGCAGCAAGAAAAGCAATTTAAGGTTTACCATTGATTCTTAATATTCACATGAAGCACTAATGTTCACATTAATTATACAATGACGGTACAATCAAATTGTAATTGCTAGCCAATGTATTTATGGGTAGCATGTTTGGGTAAACAGATGAAGGCCATTAGGACATTAGTTTGTTGTCCTTTACAAGTGAATGCTAACCGGCCTGTTTATGAGGCCACGGAGCATTTACCTTGACGGGATTTGAATCTTTAatgtatgaaaaacaaacaagcgtTCAATGGTCCTTAATGCACTAATAGTGAACTTTTAATTCAGCAAATAAagtttacaaaaatgtaaattaataaatgtgctgtgtttaaaaaaaaaagatcaaatgaATCTCTGAAGTCCAGTCTAGTCTACATTATTAGGTTCAAAAAGTTGACTCTAAATATCGATGCAGTACCTGTTGAATTCTGTAAATTTTCATTCTTGTACATATAATCGCTTGCAGTGAAACATTTTTGTGCACTCAACCTTGGATTTATTCTCAAATCCTGTTATGTCCTTTGCATTTTAGAATATGGAAATAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157416 lncRNA upstream 60825 21834466 ~ 21838752 (+) True G116794
TU157417 lncRNA upstream 63230 21834466 ~ 21836347 (+) False G116794
TU157363 lncRNA upstream 237107 21614100 ~ 21662470 (+) True G116746
TU157330 lncRNA upstream 399183 21454330 ~ 21500394 (+) True G116723
TU157251 lncRNA upstream 573314 21270751 ~ 21326263 (+) True G116657
TU157508 lncRNA downstream 18622 21935519 ~ 22020278 (+) True G116857
XR_005640669.1 lncRNA downstream 108216 22025113 ~ 22036950 (+) False LOC120568180
XR_005640667.1 lncRNA downstream 108216 22025113 ~ 22035741 (+) True LOC120568180
XR_005640668.1 lncRNA downstream 108216 22025113 ~ 22035741 (+) False LOC120568180
TU157612 lncRNA downstream 317922 22234819 ~ 22236599 (+) True LOC120568856
XM_039815806.1 mRNA upstream 2394 21870953 ~ 21897183 (+) False LOC120568354
XM_039815807.1 mRNA upstream 6445 21870953 ~ 21893132 (+) True LOC120568354
XM_039815805.1 mRNA upstream 7958 21870953 ~ 21891619 (+) False LOC120568354
XM_039815194.1 mRNA upstream 100723 21797438 ~ 21798854 (+) True cebpd
XM_039814536.1 mRNA upstream 189934 21707253 ~ 21709643 (+) True snai2
XM_039815503.1 mRNA downstream 4754 21921651 ~ 21982046 (+) True cacna1eb
XM_039815504.1 mRNA downstream 4754 21921651 ~ 21980772 (+) False cacna1eb
XM_039815505.1 mRNA downstream 66117 21983014 ~ 21987482 (+) True LOC120568173
XM_039815509.1 mRNA downstream 78703 21995600 ~ 22002864 (+) False LOC120568175
XM_039815507.1 mRNA downstream 78708 21995605 ~ 22002864 (+) False LOC120568175
XR_005640709.1 other upstream 2186 21870953 ~ 21897391 (+) False LOC120568354
TU157037 other upstream 984289 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 1523944 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 2382632 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 2880851 19017058 ~ 19018726 (+) False LOC120568770
TU157733 other downstream 691167 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 724613 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 1760182 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 1933982 23850879 ~ 23855157 (+) True G117319
unassigned_transcript_561 other downstream 1951357 23868254 ~ 23868325 (+) True trnaw-cca_13

Expression Profile