RNA id: XM_039815822.1


Basic Information

Item Value
RNA id XM_039815822.1
length 4584
RNA type mRNA
GC content 0.54
exon number 24
gene id LOC120568357
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 22066014 ~ 22151613 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGGGACCGGTGCGCCGTTTCTCCTCGCCTTGTTTGCCTCCAGTCCGGCTGTAGCTCCGACTGTCTGCACGGCGTGTGGATGAGTCGCAGATGTAATAACCGGGAGCGCACCGAAAGCTAGACTGAAGAAGTCATATTAGCCTATATCTCTTCGGGCTGTATGTGAACCAGGCCGCTGGAGACCTGCAGACAGACTTGACGTGCTCGGAGTTTGATTTTGTAGCGAGACTGGGGTGCATCTCGTCTCCTTCAAGTGCTCCTTTTTTAAGCAGTCTATCCGTAGCGCTCCCGTCCGAAGGAGCCTTGGTGCACGCACAAGAGGGAGTGGGGGGGAGGTAACGATCATTACTTTTGGACAGACTCCTCGCCATGGAGCTGTTCGTCCGGTCCCGGGCGTTTTGGCTTGAAGAGGAACAGATACCTGCCACAGGAAAGCCCACCATCTGTCCACTGTGAAGAAAGTGGAGCATGCAGCCGAGCCCCAGCCGTCTTTGTGCGACCCGCTGCTTAGTTTCTGGGGGCCTCTTCTGAAaaagggagaggaggggggctCCTGTTGTTGATCTGAAATTTAGCCTACACTTCATACCGGGATCCATATTTTGGCACGGCGTACCACGATAAGAAGATGACCTGTGATGCTTCTCCGAGAACTACTGATCGTTGACATCGCTCCAGATTTCCACTCTCCCACTGCAACACACTGAAACACTATTATTAGCCAAAAGGCTCCCTGGATTGTCTGCATACAGCGCACAATGGCCTCTGCACTGTGGAGGTGTCCGATGTTTCGCtgcctcgtcctcctcctcttttgcTTTCACTGTTCACAAGGGTTCATCCGTGCGGCCTTGCCTTTCGGGCTGGTCAGGAGGGAGCTCTCATGTGAAGGATATGCAATTGATCTCCGCTGCCCGGGGAGTGATGTCATTATGATCGAGACGGCCAACTACGGCCGAACCGATGACAAGATCTGTGACGCGGACCCATTCCAGATGGAGAACGTCAACTGCTACCTCCCCGATGCCTACAAGATCATATCACAAAGgtGCAACAACCGTACGCAGTGTGTGGTTGTCACTGGCTCTGATGTCTTTCCTGATCCATGCCCTGGCACCTACAAGTACTTAGAGGTCCAGTATGAGTGTGTTCCATATAAAGTGGAGCAAAAAGTTTTCATTTGTCCCGGGACTCTGAAGGGTGTAGGAGACGCCACCTTCCTGTTTGAGGCAGAGCAGCAAGCGGGGTCGTGGTGCAAAGACCCTCTGCAGGCCGGTGACAAAGTCTTCTTCATGCCCTGGACTCCGTACCGCACTGACACCCTCATCGAGTACGCCTCTCTGGAGGACTTCAAAAATGGTCGCCAGACCACCACCTATAAACTGCCGCACCGTGTTGACGGGACAGGCTTTGTGGCCTATGATGGGGCTATCTTCTTCAACAAGGAACGCACTCGCAACATTGTCAAGTTTGACCTGCGCACTCGCATCAAAAGCGGCGAGGCTATTGTTAATAATGCCAACTATCACGACACCTCACCTTACCGCTGGGGTGGCAAGACAGACATTGACCTAGCAGTAGATGAGAGGGGCTTATGGGTAATCTACGCCACGGAGCAGAACAATGGCCGCATTGTGGTGAGCCAGCTCAACCCATACACTCTCCGCTTTGAGGCCACATGGGAGACAGCGTACGACAAGCGCTCTGCCTCTAACGCCTTTATGGTGTGCGGCGTGCTCCACGTGGTGCGCTCGACCTACGAAGAGAATGAAAGCGAGGCCAGCAGGAGCCAAATTGATTATATCTACAATACCAAGCTGAGCCAGGGCGAGTACACTGACATCCTCTTCCCTAACCAGTACCAGTACATCACCGCTGTGGATTACAACCCCAGAGACAACCAGCTATACGTGTGGAATAACTTTTACATCCTGCGCTACGACCTGGACTTCGGGCCACCGGATCCTGCTGAAGTGCCAACCAGTGAAGATTTCTCGTTCTCGTCATCCATACCCAAGACTATTGTGGTCACCACCACCGCTGTGTCCACTGTGAAGAGTCAGGGCGACACCACTGTAGCAGGAGCAGATCCGAGAGAAGGGAGGGACCCGTTTGAGGACAATCGTGGCTCAAGTACAGCAGAGCCCACCGTCCCTGAGCTGCCACCAACACCCAGACGCTTCTGTGAGACGACCCGGAGGAGAGCCATCGACTGGCCCCAGACCCACACTGGAAGCACTGTGGAGAGGCCCTGCCCCAAAGGGACCAGAGGCATCGCCTCCTTCCTCTGCACTGTGACAGGGACCTGGTGCTCCAAAGGCCCAGACCTCAGCAACTGCACCTCCCACTGGGTGACTCAAGTGGCACAAAAGATTCGAAGTGGCGAAAATGCTGCTAATTTAGCCAATGAGCTGGCACGCCACACACAGGGCCCGGTGTTTGCCGGAGACGTCAGCTCCTCGGTGCGCCTGATGGAGCAGCTCGTGGATATCCTGGATGCTCAGCTGCAGGAGCTCAGGCCCAGCGAGAAGGACTCAGCTGGTCGCAGCTTCAACAAGcttcaaaaaagagagaagacatGCAGGGCGTACATGAAGGCAATTGTGGACACTGTTGACAACCTCCTGAGGCCAGAAGCTCTGAAATCATGGAAAGACATGAATTCCACGGAACAAACTCATGCCGCCACAATGCTACTGGATACCTTGGAGGAAGGGGCGTTTGTCCTTGCAGAAAACCTGATCGAGCCGGCGATCGTAAAAGTACCCGCAGAGAATATCATGTTGGATGTGTACGTGTTAAGCACCGACGGTCAAGTGCAAGACTTCAGGTTTCCTCAGACAAACAAGGGTGCAGCGTCTCTTCAGCTTTCCTCAAACACGGTCAAAGTCAACAGCAAAAATGGTGTGGCCAAGCTGGTATTTGTGCTCTACAAAAACCTGGGTCAGTTCCTCAGCACCGAGAATGCCACACTGAGGGGAATGGTGGATCTAAACAAACGCAACCTCTCTCTCACAGTCAACTCGCACATCCTGTCAGCTTCTATCACAAAGGAGTCCAGCCGTGTGTTTGTGGCCGACCCTGTGATCTTCACACTGGAGCACCTGGATaaGGAGCACTACTACAATCCCAACTGTTCCTTCTGGAATTACTCAGAGCGGAGCATGATGGGCTATTGGTCCACTCAGGGCTGTAAACTGCTGGAAACCAACAAAAGCCACACCACTTGCTCCTGCAGTCACTTGACCAACTTCGCCATCCTCATGGCCCATCGGGGAAATGTGgGGGAGGGGAGCGTCCACGACCTTCTTCTCACCGTTATCACACGGATGGGTATCGCCGTGTCTCTCGTCTGCCTGGCCATCGGCCTCTTCACCTTCTGCTTCTTCAGAGGTCTGCAAAGCGACCGCAATACCATTCACAAAAACCTCTGCCTCAACCTCTTCATCGGCGAGCTCGTCTACCTCGTGGGCATCAACATGACAGAACCAAAGCTGGTGTGCTCCATCATCGCCGGCGTTCTCCACTTCTGCTTCCTGGCTGCGTTCGCCTGGATGTGTCTGGAGGGCGTGCAGCTGTACCTCATGCTGGTTGAAGTTTTCGAGAGCGAGTTCTCACGCAGGAAGTACTACTACGTTTCTGGGTACCTCATTCCGGCAGTGGTTGTGGGCATCTCAGCAGCCATCGACTACAGAAGTTACGGCACACAGCGGGCGTGCTGGCTGAGGGTTGATAACCATTTCATCTGGAGCTTCATTGGACCTGTAACCTTCATAATTGTGGTCAATGTCATCTTCCTGGTGGTGACGATGTTCAAGATGGTGAAGCACTCCACCTCCATGAAACCGGACTCGTCCAGGCTGGGGGGTATCAGGTCGTGGGTGTTGGGAGCGTTTGCCCTACTTTGTCTGATGGGGCTCACATGGTCCTTTGGCTTGTTCTTCCTCAATGAATCGTCCATTGTTATGGCTTACCTCTTCACCATCTTCAACACTCTGCAAGGGATGTTCATCTTCATCTTCCATTGCCTCCTCCAGAAAAAGGTCCGCAAAGAGTACAGCAAATGTTTCCGTCAGTCCCAGTGCTGCGGCACGCTGCCGCCTGAGGGCCCCCACAGTGCAGCCAAGACAGCCACGTCTCGATCCACGGCCCGCTACTCATCTGCAACACAGAGCCGCATCAGGCGGATGTGGAACGACACTGTGAGGAAGCAGTCGGAGTCCTCCTTCATCTCAGGAGACATAAACAGCACCTCCACCCTCAACCAGGGGATGACTGGCAACTACCTCCTAACTAACCCTCTCCTTCGAACCCACGACACTAACCCTTATAACAACCTGCTGGCAGAAACAGTGGTGTGCAACACACCCTCTCCACCGGCCTTTCACTCCCCAGCTGTTCTTAGGCCAGATAGCCTGAGCAGACACACTTGATGTGAGTGTTGGCAAAGACAGCACTCTCTGAGCAACAGCAGGGACATCAGTGCCATGGACACCCTCCCCCTCAATGGCAATTTCAACAACAGCTACTCCCTGCGAGACGACGACTATGAGACTGTGGGCGTCAGAGCCCCGGGTGACCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640669.1 lncRNA upstream 29064 22025113 ~ 22036950 (+) False LOC120568180
XR_005640667.1 lncRNA upstream 30273 22025113 ~ 22035741 (+) True LOC120568180
XR_005640668.1 lncRNA upstream 30273 22025113 ~ 22035741 (+) False LOC120568180
TU157508 lncRNA upstream 45736 21935519 ~ 22020278 (+) True G116857
TU157416 lncRNA upstream 227262 21834466 ~ 21838752 (+) True G116794
TU157612 lncRNA downstream 85083 22234819 ~ 22236599 (+) True LOC120568856
XR_005640796.1 lncRNA downstream 86176 22235912 ~ 22238505 (+) False LOC120568856
XR_005640771.1 lncRNA downstream 158031 22307767 ~ 22314947 (+) True LOC120568744
TU157668 lncRNA downstream 315599 22465335 ~ 22472840 (+) True G116978
TU157787 lncRNA downstream 597384 22747120 ~ 22747732 (+) True G117077
XM_039815514.1 mRNA upstream 48707 22015922 ~ 22017307 (+) True znf830
XM_039815507.1 mRNA upstream 63150 21995605 ~ 22002864 (+) False LOC120568175
XM_039816581.1 mRNA downstream 39431 22189167 ~ 22200648 (+) False prkacbb
XM_039816582.1 mRNA downstream 39431 22189167 ~ 22200648 (+) False prkacbb
XM_039816584.1 mRNA downstream 39431 22189167 ~ 22200648 (+) False prkacbb
XM_039816583.1 mRNA downstream 39432 22189168 ~ 22200648 (+) False prkacbb
XM_039816585.1 mRNA downstream 39767 22189503 ~ 22200648 (+) True prkacbb
XR_005640709.1 other upstream 168623 21870953 ~ 21897391 (+) False LOC120568354
TU157037 other upstream 1150726 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 1690381 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 2549069 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 3047288 19017058 ~ 19018726 (+) False LOC120568770
TU157733 other downstream 458328 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 491774 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 1527343 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 1701143 23850879 ~ 23855157 (+) True G117319
unassigned_transcript_561 other downstream 1718518 23868254 ~ 23868325 (+) True trnaw-cca_13

Expression Profile