RNA id: XM_039815826.1


Basic Information

Item Value
RNA id XM_039815826.1
length 5312
RNA type mRNA
GC content 0.51
exon number 12
gene id zzz3
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 16033282 ~ 16054068 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGGTTGCTGACCATGCCGCTTCTATCTATGCGTATCAGTTTAAATGTAGCTAAACATCGGCGAAACGCAATGTTAGTAGCGATTCCCTTAATGTATTATTGGTTTGACTTAGTAACTGTACAGTTGTCTAGCTAGTTTAGCTAGCATGTACCCGATGTTAATAACGCTACTAGAGGCGCCACGATTCTTTTATGCACGATGCAGTTTATAGGGAAAACTAGCGgaggtaacgttagccaacttagctagctaactaacgttagtcGTTCacgaaaaaaagagaaataaaattgGCTTTTAGATTGGGGCAGTGTACTTGCTCGTTGGGTGTCATAGGAAGCGTGTAAGATAATGTATGAATTTCACGGGCGCAACAGTCTGCAGTTTGGTGTCTTACGtgttaatgttttatatttaacGTGAGCCCCGAGAGCTAACGGTAACTTAGTTTGCTAAACAGCAAGCTAGGTCAAGTAACGTTCGCTTGGAAGTTGGTCCATGCTAACATGTAGCTTGCTCGCCAGCTTCATGGACCAActggtttgttgttttgtcctAAACGTGTGGTTGTAGTTTTAATCTTGAACTTTAAAGTCCACCTGCTGCAGACTATTGTTAACTTAACTGGTGGCATGTGCAGCTGAAACGTTGTCTAGTCTCTAACCTTAGTTTAAGTGCATCCAACTTTGTCGCGGCAGCTCATGAGCTGGGATGTTGGGATTTGAGCGATTCTCCCCGGTATGTAGCTATAACAACACCACTTCGTGGATTTTTTGTTGCCAGTAGGCCTTGTGGAAGTGTTGGTCAGCTACAGAGATGAACTGTCCAAATCGACGGTGCCCGCATTCTGCTGCAGAAGAGAGCGCACCAGGATGAGGAGACTGTAGGCACCCGCCGTAGTATGGCCGCGTCCCGTTCCTCACGCGTCACAAGGTCGTCAGTGGGGCTCAATGGATTGGATGAGAACTTTTGTGGCCGAACCCTCAGGAACCGCAGCATCGCCCAGCCAGAGGAGAACTCTGTGCCTCCGCTACCAAGGGCCCGCTCGCCCAAGAAGAAGCAGGAGTCGAAACAGGACGCCAAGCAGGAATCTAAGCAAGAGGGCAAGCAGGAGTCGAAGCAGGACGGCAAGGAGTCGAAGCAGGACACCAAACAGGACACAAAGCATGATCCAAAGCAGGACACTCAGCAGGATGGGCAGCAGCAGGCCTTGTTGCAGGGAAAAGTAACTGACTCAAATGCTTCTCCAGCTGAGGCGGAACAATGGACCAGCTCCAGAAAGCGGGGTGTGTCCTGTTTAGAAAAAGACATAAATTCTGAGAAGTCAGAGAACTGTGATAGAGGGAAGGGGACGCGGGATGTCTGTCCTCAAATCAAAAGGGCCAGACGGGGCTCCCGCTCTGGAGAGTCTCAGGGTCACGAGGAGGACCCTGAGCCTCTGAAATCTGAAAGTCTAGTCTCTGTCTCAGAGCCTAGCAAGGACAACAGTTGTGAAGAATTTCCCAGCCAAAACTCTGCTAACACAGCTCCTGCCTCACCTGTACACAGTAAAGAGGAAGGTGAGCTGACAGGGGGGAAGGCAGAGGATAGTCATGCGGAGTGTGACGGGGCGGCTCAGCCCCCGAATGCTCACAAAACCTCTAATGGACTCAGAGACATTAAAGCAGAGGAACCTAGCACGCTCACTGACGAGACTAGTGCAAACCCCACCTCTGCCACCAACTGTCCGACGCTGCTCAACGGTAGTCAGACGGGGGCTCCCTCATCCCCTGACCCCTCTGTGCCTTGTAGAAACTCTGTCCCTGTGCAGATGGAGGTCTCTGGCTCAGGGCAATCGCCAGCCTCATCTGAACCGACATTTGAGGCTGTTCCAGAGGATCCTGTCCCTGAGTTGATAGTGGCCAAGGAGCAGGagcaggaggtggaggaggtggaggtggacgTGGTGGGCGACCCGTTGTGTCTGGCCCACGAGGAGCAGGTGACGGAGATTGAGAACGACACCAATGGCCGGGCGCTGACCCCATTGCATGAAGCTGCTGTCTCCACCTCCTCGACCATCACCAACATGAACAGTAGTccaatcaacaacaacaacagcaactcAGGAGAAACTACACCCCCACTAGCAACAACCCCCTCCCCCACAGAGCTAGGGTGCAACCCCTCAATATCCAGCACGCCTCCCTCTTTCACAGAGCTCTATGAACACAGATACACCCTGCGGACTTCACCCAGGAGGGCTGCCACTGGTGGCAAGGCCCCCTCCTCCAAGCTCAACTCTCCTCCCAGAGACAATGGTCCCTTGAGGGACGAGGGGGAGGTGGTGGTTGGGTTGGAGGAGGACTGCCCTGCGTTGGAGGAACCTGCTCCCTCAGATTGTGTTGGCCCCTCCAGTGAGGAGCCGGTCTCTGTGGATCCTGAAGACAGGGCAGGTGGTGAGGACAGTGTGGCTGTGGAGGCCAAAGAGGCTGAGCGAAGCAAGGAGCTGACACAAAGCCAggctgcagaggaggaggaggaggaggacgaagaGGAGGAGCCAGACGTGTATTACTTTGAGTCGGACCACCTGGCTCTTAAACACAACAAAGATTATCAGAGGCTTCTGCAGACCATCGGTGTTCTCGAGGCCCAGCGCACACAGGCCATCCTAGACCTGGAGACGTTGGCGTGTCACCAGAGGGAGGCACTCGGCGATCCCATCAGCTTTgtggagcagctgcagaaaCGGGTTAATTTGGGCTTGCCATGTCCTCAGCGAGTGGTCCAGCTCCCTGACGTTGGATGGGAGCAGTACACCTCAGGCCTCGGTGACTTTGAGAGAGAGTTCTGTGACAAGAAACGCAAAACCAGGCAGCTAAAGCTGATCTTCGACCAAGGTTTGCCTGCTCGACCAAAAAGTCCCGTGGAGCCCAAGAAGGAAGGTGAATCCTCCACCATGTACTCCTCTCTGCCCACTAGTGACGCTCCAGAGAATGGCAGCCAAACACAGATGATCAGGGGGAGGATTTGTCACCCAAACAAGTCTGACACATTTAACCAGCTGTGGACTGTGGAGGAACAGAAAAAACTGGAGCAGCTTCTTGTTAAGTTCCCTCCGGAGGAAGTCGAGTCCAGAAGATGGCAGAAGATTGCTGATGAACTCGGCAATCGAACAGCGAAACAGGTTGCCAGTAGGGTTCAGAAGTACTTCATCAAACTGACAAAAGCTGGTATCCCTGTGCCTGGAAGAACACCCAACCTGTGCATGTACAATAAAAAGGCAACCAGTAAGAGGCAGCACCACCTCAACAAGCACCTGTACCGGCCGTCTACTTTCCTGACCTCCTATGAGCCTCCGGTCTACATGGATGAAGATGATGAGCGCTCGGCATATTACAGCAGCGTGCAAGACCCCTCTGCTGATGACTCGGATGAGGAGGCTATACCTGTGGAGTTGAGAAATTTGCCAGAGTACAAAGAGCTCTTAGAGCTGAAGCGACTGAAAAAACAGACGCTCCAGGAGATCCAGGAGGACCGGGCCGGGATGCGGCACGTAGGCTACAAGTGTGACGTCTGCGGCATGGAGCCCATCCAGGGAGTGCGGTGGCACTGTCAGGACTGTCCGCAGGACAACTCGGTAGATTTCTGCTCCAACTGCTCCGACTGCTTGTTCAAGACAGAGACCCACAAGCCTAACCACCACTTGGAACCGGTACACCAGCCAGACACCTTTCTGGACAGGGACTACTGCCTGCCGCAGAGCACAGGCTACAACTATCTGGACCCTAACTACTTTCCAGCCAACAGATGACAGGGTCCCAGGTGCCTCTAGCTCCAGGCTCTCTCCACATATCCCACAGGCCACTCTGTGCATGGCTCCATCCTCCAAGTCCAAGATAACCGCTTAGCCCGCCGCCTGGCAGGAAGGCCAGCAGGCAGGAAAACCGCCAAGGGCCTCAAAGCAGACCACAGTGCTGCTGGTGGGGAGGGGGGCTGTTGGTAAACTGGCCTCCCTGATTCAAGTAAAGGGCCATGTTGGTTCCTCAGTACAAGGGGGCCCTGCTCCACCTCAGCCAGGTTAATCAATGGATCTGTGATTTGAAACGATACactattttttaaaaacaaacaaacaaaaaaaacaacagaaggcACACCGACATTCCCGAGCTCTGTGACTCCAGGAGGGCTGTCCCTTTTCCCCTCTTCCCCACATCGCCCTCCAGTTTACCTCCCTGTGCTGCTTCGAAACTGGAGAATTCTGGAAGTCTGGTGAAGCGCCACCTAAGGGAGAAGTGTGGTCATAGTGGACTGTGAAGTCATCAACTGAGATGCACATAGgtggtttgtatgtgtgtatgtggtctCTGTGTTATGCAAGAGTGAAACATGTTCTAGCTAGGTATTCGTAGATTGAGTATTTATGAGTCACAGCTTCCTAAACGGGAGTTGCTCCGAGACGAGTAAGGCGGTGTGGAGCGGGACGCCGAGGTCGGTGTGTTTTTGGCTGCAGACTGTAGGAAGTTCTGCTGTTCCACATGACGTTCTGCAGACAGACCTAGACCTGTAGGTGTAAAACAGACCGTGTGCCATGTTTCAGCATGGAGCCATCCCTACCACTGTCACACAACGCTGCTCTCacctttcaaacacacacacacacacacactgatacacactTTCATCTCTATTTACTTTCCCTTTGCTCTCTCTCCACTAAAACATGTCTAACAAGGAAGCACTACAGCACGGAGagcaatttttttttgaagGCAGGCGAATGGGAAGGTATGGaagactttttgttttttcatatattttttttctcctcccccAATGTGTGCCGTTGTTGATCATGTTGAGTGTACAAGTATATGGTGAAAAGTAGCCAGCACTCGTTGCTGTGTGCCATTTTTAAAAGAgacattagttttttttttttttttgggagggaaTTTCACCTCTGAACCTGGCCACTTCTCCCTTCCTGCGTGGCACCATCGATCCACATTGTCCTACATTATTGATCCAGTCATCATGCCTCTAGATCTTCTTTAATTTTGCAGTCCACTTTAAAAGGTCCATTTAAAagattgtatttttattaatctatttaaaaaaagaattgagGTAGTGGTTGGTGCCTCCACAGTGGAACAACCCACGCAATTTTATACACATAGATTTTGTTGTGCTTGAGTAGACACCATTTTGTATGGTTTTCGTCTCTTTCCCTCACCCCCTTTGCCCTGCTTCAATATCTGTGCATAACAGTCTGTTcttatgtaaaaaaacaaaacaataataatgtaaaaaaaaaaaaaat

Function

GO: NA

KEGG:

id description
K24536 ZZZ3; ZZ-type zinc finger-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155207 lncRNA downstream 1055 16031932 ~ 16032227 (-) True G115075
TU155193 lncRNA downstream 110826 15922204 ~ 15922456 (-) True G115061
TU155190 lncRNA downstream 111751 15918321 ~ 15921531 (-) True G115060
TU155189 lncRNA downstream 112297 15918321 ~ 15920985 (-) False G115060
TU155184 lncRNA downstream 186673 15843159 ~ 15846609 (-) True G115056
TU155339 lncRNA upstream 117773 16171473 ~ 16171811 (-) True G115175
TU155347 lncRNA upstream 120561 16174261 ~ 16174553 (-) True G115178
TU155348 lncRNA upstream 121658 16175358 ~ 16175706 (-) True G115179
TU155349 lncRNA upstream 122265 16175965 ~ 16177210 (-) True G115180
TU155343 lncRNA upstream 124379 16178079 ~ 16182446 (-) True G115176
XM_039815030.1 mRNA downstream 79043 15923702 ~ 15954239 (-) True pigk
XM_039815031.1 mRNA downstream 79043 15945710 ~ 15954239 (-) False pigk
XM_039816257.1 mRNA downstream 412623 15616397 ~ 15620659 (-) True cldn1
XM_039815271.1 mRNA downstream 445398 15581618 ~ 15587884 (-) False bcl6ab
XM_039815272.1 mRNA downstream 445575 15580776 ~ 15587707 (-) True bcl6ab
XM_039816384.1 mRNA upstream 559 16054259 ~ 16077214 (-) False usp33
XM_039816385.1 mRNA upstream 559 16054259 ~ 16077214 (-) True usp33
XM_039816386.1 mRNA upstream 559 16054259 ~ 16077213 (-) False usp33
XM_039816239.1 mRNA upstream 40308 16094008 ~ 16103715 (-) True fubp1
XM_039816237.1 mRNA upstream 44286 16097986 ~ 16103715 (-) False fubp1
XR_005640845.1 other downstream 620223 15412986 ~ 15413059 (-) True LOC120569143
XR_005640844.1 other downstream 620815 15412393 ~ 15412467 (-) True LOC120569142
XR_005640843.1 other downstream 621442 15411663 ~ 15411840 (-) True LOC120569141
XR_005640842.1 other downstream 621935 15411162 ~ 15411347 (-) True LOC120569139
XR_005640597.1 other downstream 728672 15290186 ~ 15304610 (-) False mfsd8l2
TU155326 other upstream 90460 16144160 ~ 16148121 (-) True G115164
XR_005640638.1 other upstream 128954 16182654 ~ 16201698 (-) True cc2d1b
XR_005640639.1 other upstream 128954 16182654 ~ 16201257 (-) False cc2d1b
XR_005640637.1 other upstream 128954 16182654 ~ 16201257 (-) False cc2d1b
TU155443 other upstream 277253 16330953 ~ 16335932 (-) True LOC120568735

Expression Profile