RNA id: XM_039815845.1


Basic Information

Item Value
RNA id XM_039815845.1
length 5041
RNA type mRNA
GC content 0.55
exon number 36
gene id LOC120568369
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 16847810 ~ 17015626 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTACTCACAGGCTGGGCTCACAAGCGCCCTCTACCGGGCAGATAGCGCGCACACAGCTGCTGCTCTCCTGGAGCTGCCGGACCACTCAATCCGCGCGTAATTCCGGAATCAGGACTCACTCACACATTCCTCCTCCAAGTGTGGAGCAAGCCAGGAGCAGCCGTGTCTGCGACAGTGTCTTCTCACACCCCGACAGCACGCCAAGGGACGGAGGACAGGGAGAAGACACTTTAGATTGAACACTCCTAAAAGTATAGGTAGGGTTCAAGTTGCATTAAAGAAAGAAGAGTTGCCAGTTAACCCCGCGGCTGGGGGTTAACGCTACGACGGCGCTGTCGACATGGATAAAGTTATAAATTGCTTGTTTGCTGCAATAGCCCTGCTGTTGTCCGCACGAGGGGAAGTTTTTAAAGGCGATTGTAACTTTGAGAAGCCGCTGGCAGCATGTGGGTACAGCCAAGGCAGAGACGATGACCTTGACTGGGAGCAGGCCAATACCAGAGAGAAGCCTTCATCAGATCCATGGATGCCCCCAGGTTCAGCCTTCATGATGATGAACACGTCCGGACGCTTTGTAGGGCAGAAGGCCTTactgctaacaccacagctgAGGGAGAATGACACCCACTGTGTTACCTTCCACTACTATATAGGAGGCAGAGACAATAGCCACCCAGGTCATCTAAATGTCTAtatcaaagaaaacaacagtcCCATGGGGATGCCTGTTTGGAATGTGTCAAGTCCAGCTACACGCTCCTGGGGACAGGTAGAACTGGCCATCAGTACCTACTGGCCCAACTTCTACCAGattGTGTTTGAAGCCGTAACCTCAGGACAGCGTGGCTTGCTGGCCATCAAAGACGTCGTGGTCCAGGGCCACCAGTGCATGAGCACACCTCACTTCCTGACTATAAAGGGAGTGGAGGTAAACGCTGGACAGACTGCATCTTTTCACTGCACCGTCAATGGACGCAAAAGGGACAATTTCCGCCTTTGGCTTCAGGGCATCGGTGGACGGGAGGCCCCGATGAAAGCCACTAAACCTTGGAACAACCGGCGCTTCATAGGCACTTTCGATGTTGAGAACACAACCAAGGGCGACTCGGGCCGCTACCGCTGCATCGTCCACTCAGATAAAGGGGTCGGAGTGTCCAATTATGGGGAACTAACCATAAAACAACCTCCGGTGCCAATTGCACCACCCCAGCTGACTGCTGTTGGTGCCACTTACCTTTGGATCCAGCTGAACGCCAACTCCATCAATGGGGACGGCCCAATCATCGACAGGGAGGTGGAATACCGCACTGTGTCCGGCACTATGTATGACCTGCAGCCCGTAGACAAGACCACACACAAGATCGGCCACCTGGATCCAGACACAGAGTATGAGATTAGTGTTCTGCTGACCAGACCTCTGGAGGGAGGCACCGGAGCCCCCGGACCCCCTCTGAGGGCCAGGACTAGATGTGCTGAGCCCATGCACGGCCCACAAAGGCTAGAAGTGGTGGACATCCAATCCAAACAGGTGACAGTGCGCTGGGAGCCTCTGGGCTACAATGTGACCCGCTGCTACAGCTACAACCTGACCGTCCAATACCGGTCCAGGGTGGCCGGCAAAGAGGAGACCCGCGAGGAGGTGTGTTATGACACCCAGAGCCGCGATCCTCAGCACACCATCCACAACTTGACACCCTTCACCAACCTCAGCGTCAAGCTGGTCCTACGCAATCCAGAGGGGGTCAAGGAGAGCACAGAGCTGGAGGTTCAGACTGATGAGGATGTGCCAGGAGCTGTTCCTCTGGAGTCCATTCTGGGCAGTGCCTATGAGGAGAAGATCATCCTGAAGTGGAGAGAACCAGCACATACCTATGGGATCATCACTCAGTTCGAGaTCTCCTACAAGGCTGTGAGCTCCTTTGACCCTGAGCTGGACCTCTCCAACCAGAGTGGGAAGGTAGTGAAGTTGGGCAACGAGACCACCCACATGTTCACAGGCCTCTACCCAGGCTCTACGTACTCCTTCACCCTGCGTGCCAGCACAGCCAAGGGCTACGGACCCCCTATCATCACTCAGTTCACCACCAAGATATCAGCTCCTTCCATGCCGGCGTATGACCAGGAGACCTCTCTGAACCAAACCGACAGCACAGTCACTGTCCTGCTTAAACCTGCCCAAAGCAGAGGTGCACCTGTAAGTGCATACcaggtggtggtggaggaggaacGTCCACGCAGAGCACGAGGCACAGCAGAAATCCTGCGCTGCTACCCAGTTCCCATTCACTTCCAGAACGCCACGCTCCTAAACTCTCAGTACTACTTCACTGCTCAGTTCCCTGCCGGCGGCATCCACTCACCCCAGCCCTTCACTGTGGGGGACAACAAGACCTACAACGGCTACTGGAACGCCCCTCTGCTGCCTCAGAAAAGCTACAGCATCTACTACCAGGCTGTCAGCACAGCCAACGGGGAGACCAAACTTGACTGTGTTCGCGTAGCCACCAAAGCCGCCATACTCGTGACTCAGCTCACAACCCCCTACATCCGCATCGCCCCAGCGGCCGGTGACAACCAACTAACAGGAGCAGCCACTCACAAACCTGATGCGGTGGAGCCAGAGAAACAAACGGACCACACGGTGAAGATCGCTGGGGTCATCGCTGGcatcctcctcttcgtcatCATCTTCTTAGGAGTGGTGCTCCTCATGAAGAAAAGAAGAACCTATCACTCCTACACTTACTACCTGAAATTGGCCAAGAAGCGTAAGGAGACACTGAATAGCACCCGCCAGGAGATGACAGTGATGGTCAACTCCATGGACAAGAGCTACACGGAGCAGGGTACCAACTGTGACGAGGCGCTGTccttcatggacacacacaaccacacgcTGAACACCCGCAGCGAGTGTGCGCTCACACTCAATGGCCGCAGCGAGTGTGCGCTCACACTCAACGGCCGCAGCGAGTGTGCGCTCACACTCAACGGCCGCAGCGAGTGTGCGCTCACACTCAACGGCCGCAGCGAGTGTGCCCTCACTCTCAACGGGCGAGCTGGATCATCACCCTCTTCCTTCACGCTGCCTAAAGCCAACACTCTCAGTACTTCAATCCCCACCAACTCCTACTACCCAGATCCCTTTGTGCCAACTGCTATCTTAGTGCCCATTAATGATGAGAGCCAGAACATGGGCAGCGACACCAGCAGTCTGGTGCAGTCGCATACTCACTCCCTGAGGAAGCGGGAGCCGGTCGATGTGCCGTACCAGACGGGCCAGCTGCACCCGGCGATCCGCGTGGCAGACCTCCTTCAGCACATCACCCAGATGAAGTGCGCCGAGGGTTACGGCTTCAAGGAGGAGTACGAGATAAACGAGaGCTTTTTTGAAGGACAGTCTGCGCCATGGGACTCTGCCAAGAAGGATGAGAACCGCATGAAGAACCGATATGGGAATATTATTGCATATGATCACTCCCGTGTCaggctgcaggccctggagggGGAACAGAGCTCCGATTACATTAATGCAAATTACGTTGATGGCTACCACAGGCCAAATCACTACATCGCCACACAAGGCCCCATGCAGGAGACGGTCTTCGACTtctggaggatggtctggcaggAGAACACGGCAGCTATCGTCATGGTGACCAACCTGGTGGAAGTGGGCAGGGTGAAGTGCTGTAAGTACTGGCCTGATGACACTGAGATCTACAGAGACATCAAGGTTACACTGATAGAGACTGAGCTGCTGTCAGAGTACGTCATCAGGACATTTGCAGTAGAGAAGAGAGGGGCTCATGAGATTCGGGAAATCCGTCAGTTTCACTTCACCGGCTGGCCGGACCACGGGGTGCCCTATCACGCCACGGGCCTGCTGGGTTTTATTAGGAGAGTCAAGTCCAAGACTCTGACCAATGCTGGGCCCATGGTGGTTCACTGCAGTGCCGGGGCAGGACGGACAGGCTGCTTCATCGTCATAGACATCATGCTGGACATGGCGGAGAGAGAGGGTGTGGTGGACATTTACAACTGTGTGAGGGAGCTGCGCTCACGGAGGGTCAACATGGTCCAGACTGAGTATGTCTTCATCCATGATGCCATCTTGGAGGCATGTCTCTGTGGCGACACCACCATTCCTGCCAGTCAGCTCCGCTCCGTGTACTACGACATGAACCGCCTGGACCCGCAGACCAACTCCAGCCCCATTAAAGAGGAGTTTAGGACTCTGAATATGGTGACTCCCACGTTGCGGGTGGAGGACTGCAGCATCGCCCTGCTGCCCAGGAACCACGAGAAGAACCGCTGCATGGATGTTCTTCCTCCAGACCGCTGCCTCCCCTTCCTGATCACCATCGATGGGGAGAGCTCCAATTACATCAACGCTGCGCTCATGGATAGTTACAAGCAGCCATCTGCATTCATAGTGACCCAGCACCCGTTACCAAACACAGTGAAGGACTTTTGGAGATTGGTGCTGGATTACCACTGCACATCCATAGTAATGCTCAACGACGTCGACCCAGCCCAGTTGTGCCTACAGTACTGGCCAGAAAACGGAGTCCACCGCCATGGTCCCATCCAGGTAGAATTCGTCTCTGCTGACTTGGAGGAGGACATCATCAGCAGAATATTTCGGATCTACAATGCAGCACGGCCTCAGGACGGCTACCGGATGGTGCAGCAGTTCCAGTTCCTGGGCTGGCCCATGTACAGAGACACGCCCATGTCCAAACGCTCCTTCCTCAAGCTAATCCGACAGGTGGACAAGTGGCAGGAAGAGTATGACGGGGGCGAGGGACGTACTGTGGTCCACTGTCTGAATGGAGGCGGCCGAAGTGGGACATTCTGTGCCATCAGCATTGTGTGTGAGATGCTTCAACACCAGCGCTCTGTGGATGTTTTCCACGCTGTCAAAACACTAAGGAACAATAAACCCAACATGGTGGACCTGCTGGACCAGTACAAGTTTTGCTATGAAGTGGCACTGGAGTACTTGAACTCTGGGTAACTCACAGCTACTGAACCCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640831.1 lncRNA downstream 23150 16823302 ~ 16824660 (-) True LOC120569046
TU155549 lncRNA downstream 96535 16750900 ~ 16751275 (-) True G115331
TU155540 lncRNA downstream 232885 16613028 ~ 16614925 (-) True G115323
TU155522 lncRNA downstream 287337 16558268 ~ 16560473 (-) False G115309
TU155520 lncRNA downstream 289612 16543613 ~ 16558198 (-) True G115309
TU155651 lncRNA upstream 21240 17036866 ~ 17039107 (-) True G115391
TU155697 lncRNA upstream 97090 17112716 ~ 17114744 (-) True G115428
TU155698 lncRNA upstream 104295 17119921 ~ 17121046 (-) True G115429
TU155699 lncRNA upstream 107096 17122722 ~ 17123058 (-) True G115430
TU155702 lncRNA upstream 118247 17133873 ~ 17135813 (-) True G115433
XM_039815013.1 mRNA downstream 27776 16814692 ~ 16820034 (-) True LOC120567917
XM_039814996.1 mRNA downstream 45548 16756331 ~ 16802262 (-) False epb41l3b
XM_039814640.1 mRNA upstream 5109 17020735 ~ 17022393 (-) True LOC120567671
XM_039814525.1 mRNA upstream 24178 17039804 ~ 17041463 (-) False ly97.3
XM_039816998.1 mRNA upstream 150265 17165891 ~ 17176411 (-) True LOC120569119
XM_039816565.1 mRNA upstream 167536 17183162 ~ 17275789 (-) True LOC120568842
XM_039814936.1 mRNA upstream 281429 17297055 ~ 17298924 (-) True LOC120567855
XR_005640632.1 other downstream 45546 16756331 ~ 16802264 (-) False epb41l3b
TU155525 other downstream 207998 16637108 ~ 16639812 (-) True G115312
TU155443 other downstream 511878 16330953 ~ 16335932 (-) True LOC120568735
XR_005640639.1 other downstream 646553 16182654 ~ 16201257 (-) False cc2d1b
TU155670 other upstream 24174 17039800 ~ 17041476 (-) True ly97.3
TU155671 other upstream 24174 17039800 ~ 17108904 (-) False ly97.3
TU155672 other upstream 27500 17043126 ~ 17045062 (-) True G115406
XR_005640621.1 other upstream 1467530 18483156 ~ 18494488 (-) False sppl2
TU156258 other upstream 1701256 18716882 ~ 18718544 (-) True LOC120568909

Expression Profile