RNA id: XM_039815854.1


Basic Information

Item Value
RNA id XM_039815854.1
length 3597
RNA type mRNA
GC content 0.54
exon number 18
gene id epha4b
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 27738992 ~ 27838118 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGCAGAGCTGCGCTCACCGACTCGACACCGCCAACAGGGATGCAGCGAGGGCGCAGCGCAGCCTGAAAAATGGCACCACCACGCGTCCTGTGGATCTATCCATCCCTTTTCTTCCCGTCCTCCCTGTTCTTCCTTTTTCACGCGTTGTCGCCGTGCCGAGCCTTACGGAATTACCCGGAGAATGAAGTTACGTTGCTGGACTCCATGTCAGCCTTGGCCGACCTGGGCTGGGAGGCTTACCCTAATGAGGGGTGGGAGGAGATCAGTGTGATGGATGAGAGGAACACCCCGATGAGGACCTACCAGGTGTGTAACGTCATGGAGGCCAATCAAAACAACTGGCTGAGGACGCGTCACATCAGCCGAGAAGGAGCACAGCGCGTCCACATTGAGATCAAATTCACCCTGAGGGACTGCAACAGCCTGCCCGGGGTCCCCGGTACCTGCAAGGAGACATTCAACATGTACTACTATGAGTCCAACAATGCCAACCTGTGGTTCATCAAGGAAAGCCAGTATGTCAAGATCGATACTATTGCTGCAGATGAGAGTTTTACACAGGTGGACGTTGGGGACCGCGTGATGAAGCTGAACACGGAGGTGCGCGACATCAGCAACCTGAGTAAAAAGGGCTTCTACCTGGCCTTCCAGGACCTCGGCGCCTGCATCGCTCTggtctcagtcagggtcttctACAAGAAGTGTCCCCTCACTGTGCTTAACTTGGCCCAGTTCCCCGACACGATAACGGGCGGAGACACGGCACTGGTGGAGGTccacggtgtgtgtgtgaacgccTCTGAGGAGTTTGAGGCTCCGAAGATGTACTGCAGCGCAGACGGAGGCTGGCTGGTTCCCATCGGGAGGTGTGTGTGCAAACCGGGCTTCGAGGAGAACAAGGACGTCTGCCAACCGTGCAGACATGGTACCTACAAAGCCTCAGCCACAGATGCCTACTGCACCAAATGTCCTCCTCACAGCTCGTCGCCCCAGGAACAAGCGGTCGAGTGCGTTTGCGAGAGAGGTTTCTACCGCGCTGAGACCGACCCGCGCTCCATGGCCTGCACACGTCCTCCGTCGGCTCCAGAGAACACCATCTCCACAGTGAACGAGACCTGCGTCACCTTGGAGTGGTCGCCCCCCAGAGACACAGGAGGCCGGGGAGACATCACCTACAGCCTCCAATGCAGAAAGTGCTCCGGGGACGGCCGGAAGTGCACGCCGTGTGGTAGCAGCGTCCATTTCGTTCCCAGACAGTTTGGTCTCTCGTCAGCCACCGTACTGGTTACCGACCTGCAGCCGGACTCCAACTACAGCTTCACTGTCGAGAGCCAGAACGGAGTGTCGGACTTAAGTCCCACGCCCAGAGGAACGGTAGTCATCAATGTCACTACATCCCAGACAGTGAGCGTAGTGTTGAAGGAGAGGCGGAGCAAGGACAGTGTGACGTTGGCCTGGCAGGGTCCAGTGAGACCCAACGGAGCCATCGTGGAGTATGAGGTCATCTACTATGAGAAGAACCAGCGGGAGCAGAACTACACAGTGTTGAAGACTCGCTCCAACATGATGACAGTGGACGGGCTGAAGCCAGGGACCACCTACGTGTTCAGGGTTAGGGCTCGAACCGATGGGGGCTACGGGAGCTACGGGGGAGAGATCGAATTGGAAACCAGCCACGAAGATGTCTTTGCTATCGGGGACCCTAACCAGTCCACCATTCTGGCTGTGTCCATCGCCGGGGGAATCGTTCTCCTCATCTTCCTGGTGACTTGCTTTGTTGTCAGCGGAAGGCACTGTGGATATATCAAAGCCAAGCAGGACCCTGATGAAGAGAAGATGCAGTTCCAACACGGCCGAGTCAAGCTTCCAGGCAGCAGGACCTACATCCATCCTCACACTTACGAAGACCCCAACCAGGCTGTCAGGGACTTTGCCAAAGAGATCGACGCTTCCAATATTCGCATAGAGAGAGTCATTGGAGCTGgagagtTTGGGGAGGTGTGCAGTGGCCGGCTGCGTGTTCAGGGAAAGAGGGAGATCTACGTGGCCATAAAGAGTCTGAAGGCGGGATACTCTGACAAACAGAGGCGGGACTTCCTGTCTGAGGCGTCCATCATGGGACAGTTTGACCACCCGAACATCATCAGGCTGGAGGGGGTCGTCACAAGATgtaAACCAGTGATGATCATAACGGAGTTCATGGAAAACGGATCCCTGGACACTTTTCTCAAGAAACATGACGGCCAGTTCACGGTGATCCAGCTGGTCGGCATGCTGCGCGGCATCGCCTCAGGTATGAAGTACCTGTCGGACATGAGCTACGTCCACCGAGACCTGGCGGCTCGAAACATCCTGGTCAACAGCAACCTGGTGTGTAAGGTGTCTGACTTTGGCCTGAGCCGAGTTCTGGAGGACGACCCAGAGGCGGCCTACACCACGAGGGGAGGAAAGATCCCCATCAGGTGGACGGCTCCAGAGGCCATAGCTTACAGGAAGTTCACCTCAGCCAGCGATGTGTGGAGTTACGGCATCGTCATGTGGGAGGTGATTTCATACGGAGAGAGGCCCTACTGGGAGATGTCCAACCAGGATGTGATCAAAGCGATAGACGAGGGCTACCGTCTCCCCGCTCCTATGGACTGTCCTGTGGTGTTGCACCAGCTCATGTTGGACTGCTGGGAGAAGGGACGCAGCGACAGGCCAAAGTTTGGACAGATTGTCACAATCCTGGACAAGCTCATCAGAAACCCAGCCAGCCTCAGAGAGCTCGCCAACAGCTCAGCATGTGAATTGTCCAAGATGGGTGTGAGTCTTGCCGGCCACCAGAAGAAGATTTTGTCCAGCGTGCAGAGCCTGCAGACCCAGGGGACGCACGTCCAAGTATAACAGTTTCCACATAAACGCACAGTGAGACAGAGCCAAAATGGATGCTCCTGTGAAGAGTTTCCCCCGCTGAAACGGCAGTTGTAATGGAAACTCTGTGCTCGGGCCTCCATTGATCTCGAGACACACTGAGGTGGAGACAACATGGGACGCTTGACTCCTTCACCTTCTCGCAGTTTCACCATTCTTCCCATCCTCGATGGGCACTACCGGCTTTAGCACTCAAGAGTCCCGGCGACACAGCCACCGTTGTGGAGCGACAGAGAGACGCACGTCCAACAACAAGGCCACATCAAGAGCATCCCAGACCATTTCACATCATATCAGctcaacaaaagaagaaaaacatattCTTAACAaaggaaatgacaaaaaaaaaacaaattagaaTATAATTACCATCACTGTCTGTGAGGTGTagagttgtttgtttttttttccccgtcATTTTGTTTCCGTTTTGAGTTTTCACCTCGAAGAGTTTAAAAAGGATCAGAAGATATGTATACGTGTAGATATATGTTTATATGGGCTACGTGTCCCACAACCGTAGAGATGGACCTAACGTTTGTATTGGTGGTGAGGTTTGTATCgctcaaacttaatgggagttGTTACCTAGTACATGTATGGCCCTTTCCAGGGCTCTCTGTATACAGAGAGCCAATGAGAGAGCCAAGGTTCTGAatgacatgaatgtgtgtgggggaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159731 lncRNA upstream 33921 27704170 ~ 27705071 (+) False LOC120568664
TU159727 lncRNA upstream 48305 27689012 ~ 27690687 (+) True G118514
TU159690 lncRNA upstream 128667 27610098 ~ 27610325 (+) True G118488
TU159611 lncRNA upstream 339596 27399054 ~ 27399396 (+) False gpr35b
TU159604 lncRNA upstream 351036 27386896 ~ 27387956 (+) True G118420
TU159760 lncRNA downstream 106133 27944251 ~ 28042190 (+) True G118537
TU159779 lncRNA downstream 198343 28036461 ~ 28037330 (+) True G118549
TU159804 lncRNA downstream 281149 28119267 ~ 28119624 (+) True G118564
TU159792 lncRNA downstream 318855 28156973 ~ 28159589 (+) False LOC120568082
TU159816 lncRNA downstream 338369 28176487 ~ 28178341 (+) True G118575
XM_039816318.1 mRNA upstream 33781 27704001 ~ 27705211 (+) True LOC120568664
XM_039814839.1 mRNA upstream 50936 27686164 ~ 27688056 (+) True LOC120567796
XM_039816276.1 mRNA upstream 106011 27612075 ~ 27632981 (+) False LOC120568637
XM_039814528.1 mRNA downstream 122784 27960902 ~ 28025246 (+) True dnah9l
XM_039814618.1 mRNA downstream 248699 28086817 ~ 28104458 (+) True LOC120567659
XM_039815281.1 mRNA downstream 318683 28156801 ~ 28169970 (+) True LOC120568082
XM_039815282.1 mRNA downstream 354797 28192915 ~ 28203729 (+) True pcyt1aa
XM_039815283.1 mRNA downstream 355420 28193538 ~ 28203729 (+) False pcyt1aa
TU159680 other upstream 129274 27602024 ~ 27609718 (+) False LOC120568838
TU159378 other upstream 852962 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 969081 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 1138920 26590830 ~ 26600072 (+) True prkab2
TU159113 other upstream 1320984 26416508 ~ 26418008 (+) True ccl20a.3
TU159791 other downstream 318855 28156973 ~ 28159589 (+) False LOC120568082
TU160295 other downstream 2130295 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 2731277 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 3333099 31171217 ~ 31196233 (+) True G119114
TU160516 other downstream 3360842 31198960 ~ 31200014 (+) False G119123

Expression Profile