RNA id: XM_039815872.1


Basic Information

Item Value
RNA id XM_039815872.1
length 3326
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC120568379
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 399034 ~ 417701 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGAAATATGTTATCAGTACTGAGGATCTAAGACTGCCTGAAGTCTGTAAACCTGAAGAAGGAAACTCCACGAGAAAGTTTTTTGGTGATTAAAAATGTTCCAAAGGATCATcggtctgctgctgcttctcatGGCTGCTTGTTCAGCTCAGAGCACAGGGTCTGTAGCCACCAGCTGTGAGGCCTGTCATAGTCTGGCTCAATGCCATGCCTCCCTCCACGACAACAGTGTCGAGACTGTGGGCGTGTCCTGTCGCTGTGAGGACGGTGTGGTGGGAGATGGCTTCACCTGCTACAACAAAACCACTTGCAATGATGACTGCTGTGGCCAAGGCTTCCGCTGGTCACCACTGCAGGGCTGCGTGGACATCGATGAGTGTTCACTGCCCAATCCTTCCTGCGGTCCTGGACAACTCTGCGAAAACACCCGAGGCTCTTTTTCGTGTCTGGTGATGCCTAATCTACAACGTCACACCAAAACCACATCCCGCTCAGTGACGTTTGCCTGCGGGAGCACACAGTGCCCTTTCGGTCAGAGCTGCCTCCAGGTGAATGGCACATCTCAATGCATTGACCCATGTCAGCACTACACTCCATTACAAGATGCATGGCGAGCCACAGACTTCAGGCACCCAGAGTCTGTGGCCTGTGACAGCCGTACAGATTGGCAGGGCTGGTACCGCCTCTTCATCGGTAACAGCAGTGTTCGGATGCCAGAGAGGTGCATTGAGAGTCATATGTGTGGGACCGATGCTCCGCTATGGATGCGATCTCCCCACCCACTGGAGTATGAGGGCATCGTACGGGCGGAGGTTTGTGGCAGCTGGGAGGGAGGCTGCTGCCAGTTTCACTCCAACTTCATCCACGTGAAAGCATGTCCAAGAAACTACTATGTCTACAAATTTGTAAGCCCAAACTTGTGTCGGCTAGCTTACTGTGCAGATGTCAACACCATGGTGTGTAATACCTGCGCTGAAGGTGAGACCTGTGTGAGTGACGACAAGATCAACTGGAGGTGTGGGCAGCCAGCTCCTCGGCTGAGGTTGGTAGATGGTAACACACCATGCAACGGTAGACTGGAAATCCTCCATAACAACCAGTGGGGAACAGTGTGTGATGATTTATGGGATACAAACGACGCCAAGGTGGTCTGCCGACAGCTGAGATGTGGCCCTGTCCAGTCAGCAACTGGGTCTGCCTCCTTTGGACAAGGCACCGGACCGATCTGGATGGATAATGTTGCCTGTAAAGGCAATGAGTCTTTGCTATCGGAATGTGAACATACAGGGTTTGGCACTCATAACTGCAACCATGGGGAAGATGCTGGAGTCATCTGTTCTGATGAACTTAGTGGTTTTCCAGAGCCGGAGTTGGTGTGTGGACAGGATCACCTGCGTCTGACAGTCCAGAAGAGGCTGTTGGAGGAACGAGGGCTGGACGCCTCCTCTGCTCACATGATCGACCCGCGCTGCCACCAGCAGGTCGACCAGCAGGAGGCGATGTGGTACCTGGTGCAGCGAAGGAAGGGTATCTGTGGAAACGTGGTAGAGACAAACGGCTCCCACATTACATACTCCAACATTTTGTTCGTGTACCCGTCTGATTGGTCCAACGACCTGCTCTCCGTCCCGATGAGCATCCCGTTCTCCTGCGTCTTCCCGCTCGATGACATCACCAGTCTCGACACCGCCATTCGATACCAGCTGCCTCGTAGAGTTGGCGTGGTGCGTTCAGGTGACCCCACCAGGGCGCGGATGACTCTGTACGAGAGGCCGGACTACAGCAAGCCGTTCCCCGCTGGCCCGGTCAGCCTGCCGCTGGGCGCCGCCCTGCACGTCGGTGTTTCTGTGGAAAACTACGACAACAACAGCTTTGTGCTGCTTCTGGAGCACTGCTACATCACAAACTCGCCCAACGCCGATGATCCTGCCAGATATGTCCTGATCCAGAACAGGTGTCCAGTTGACCCTCGCCATGTGAAGGTGGCGGAAAGCGGTGTGTCGCAGCGAGCTTGCTTCTCAGCGCTGCTGTTCCTCTACCACGGGACGTTTGAGGACGTTTATCTGCACTGCCAGATCAGCCTGTGTGACCGGGACAGAGGCCGCTGCAGCCCTAATTGTTCCAGGCGACGCGCTCGGTCCGCCACCGTAGCCAATCAGCTTCCTGTCACTGTTGGACCAATCAGCTGGTCATAACAAGAGCGCTGAGGCTGCAGAGGAATCAACTTCCTGTTGCTGAGGCAGAGAATCTTTATTACTTCACTTTATTACACAACAGTTTGGGTATTTTCTAAAACAGCTTATTTGattgtcacatagtagagggaGACAAGGGAATCAATTGTCACTGCCATCCCATCCTGAGCCCACGAAAATACTCATATCCCCATCAGGTGactgcccccacccccccaaaaaaatcctgTCCTGCAAAATCCCAAGAGAAAGACTCCCGAATCCCATTTGGTTCCCTATGTTGTCTAAAGTTATCAGACTCTTTTACCACCCTGTAGCATGTTCGGTTAATTGCGGTCAAATCACTGAGGTTGCCTTGGAAATTTAGGCTACACcatacatgcattacctgcaggcctaagtaacatgtattacctgcaggcccaGATAACATGCATTATCTGCAGGCCTtcaggtaacatgtattacctgcaggcctaggtaacatgcattacctgcaggcctaggtaacatgcattacctgcaggcctaggtaacatgtattacctgcaggactaggtaacatgcattacctgcaggcctaggtaacatgcattacctgcaggcctaggtaacatgtattacctgcaggcctaggtaacatgcattacctgcaggcctaggtaacatgcattacctgcacgCCTAGGCGATTTCATTACATAATTCCTAACGGAGATCTTCTCACAATCAAAACACATATTTATCGATTTAGGGTAATTTAGAAGAATCGCTGTCTGTGGCTAGCAGTAGCCAATCAACAAACGTATTGTGAGTTGTAAGTTGTTCTCTTTTATAAAACGAAATGCCTCGCAATCTTTGGGCGCACTCACAGCATTGCAgcgtcatttttttatttaatatccGACTCCGTCCCACTGCCGTAAATTTCTATGCTCTATTCCGTCCTTATCACGTTACCAACAGTGAAATTGACTCCCGTACTGCGGGACTCCCGCGGGAATACCGTGACCCGTcaccctctactacactgtcagaattatttttttcctataAAAAAATTAGCAGATTAAACTGAACATCTGACTTTGTTTTgtgatgaaaacaaaaataaaaatgaaagatGATGAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149286 lncRNA downstream 1843 375313 ~ 397191 (-) True G110898
TU149283 lncRNA downstream 26343 267135 ~ 372691 (-) True G110895
TU149285 lncRNA downstream 108871 289796 ~ 290163 (-) False adhfe1
TU149288 lncRNA downstream 133803 264405 ~ 265231 (-) False adhfe1
TU149287 lncRNA downstream 138086 260603 ~ 260948 (-) True G110899
TU149347 lncRNA upstream 79843 497544 ~ 543185 (-) True G110925
XR_005640620.1 lncRNA upstream 130634 548335 ~ 548652 (-) True LOC120567842
TU149394 lncRNA upstream 260117 677818 ~ 767571 (-) True G110946
TU149419 lncRNA upstream 338220 755921 ~ 796589 (-) False G110964
TU149420 lncRNA upstream 338220 755921 ~ 756638 (-) True G110964
XM_039816864.1 mRNA downstream 1530 388691 ~ 397504 (-) True LOC120569047
XM_039816863.1 mRNA downstream 3963 388691 ~ 395071 (-) False LOC120569047
XM_039816880.1 mRNA downstream 71655 326426 ~ 327379 (-) True LOC120569059
XM_039814761.1 mRNA downstream 88972 309109 ~ 310062 (-) True LOC120567752
XM_039816038.1 mRNA downstream 96892 258075 ~ 302142 (-) True adhfe1
XM_039815881.1 mRNA upstream 2200 419901 ~ 433183 (-) False LOC120568383
XM_039815880.1 mRNA upstream 2200 419901 ~ 433179 (-) False LOC120568383
XM_039815879.1 mRNA upstream 2200 419901 ~ 433179 (-) True LOC120568383
XM_039815877.1 mRNA upstream 17586 435287 ~ 453081 (-) True LOC120568382
XM_039815875.1 mRNA upstream 40750 458451 ~ 512917 (-) True LOC120568381
TU149268 other downstream 16369 375712 ~ 382665 (-) True G110889
TU149269 other downstream 17418 375712 ~ 381616 (-) False G110889
TU149279 other downstream 110694 266959 ~ 288340 (-) False adhfe1
TU149280 other downstream 110694 266959 ~ 288340 (-) False adhfe1
TU149262 other downstream 155948 235257 ~ 243086 (-) False LOC120567755
TU149406 other upstream 336562 754263 ~ 766300 (-) True G110957
TU149470 other upstream 431481 849182 ~ 849492 (-) True G110988
TU149680 other upstream 587370 1005071 ~ 1005925 (-) True G111136
TU149674 other upstream 591193 1008894 ~ 1010100 (-) True G111134
TU149667 other upstream 595118 1012819 ~ 1021435 (-) False G111133

Expression Profile