RNA id: XM_039815882.1


Basic Information

Item Value
RNA id XM_039815882.1
length 5467
RNA type mRNA
GC content 0.47
exon number 19
gene id si:ch211-106h4.9
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18868082 ~ 18920043 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agggcgggtcttggcgtggccatagttggattcgtaattttgcctACCGCCGGTCTGTCCGTAGCTCTCCAGCATTGATCGTGTTTCATGAAACAGGATGCAACTGTATCCTCAACTAGGCATAAACCGGGACAGGCTGCACGGATCAGACCTGCAGCGGTGAAACTTCTCTTTAACCAAAGAAAGAGCAAAGATTGTAAAGCGTCTTGGatactttatattttaatatttattttggcGACAGCTCACAGAGGCTAACGAGGAGTAAACGGGTACCATTGTATTTCCCCCCTCTGTGTGGCCGTGAATGTGCACCGGTGGTCAGTTTCCCCCAGCAAGAGCTGACTCAGAGATCGCTGAACTCCATATACACAGGGGTTCACTGGAGACACCCTGATCTGCTGTCATGTTGGCTTCAGTCACAGAAAGGTTGGCCTCAACTTTGTCTGTCATAGAGAGATTTCATCCTCAGGAATGCTAATGCAGAAAACCCAAATCCTGCTCGGTGTTAATACCCCTGATTTACTTGTATGTTAACAGCAAGCTGACTGATTGGTCAGAGGGGTTGAGTGGCAGCCAGAGGTGTGTCAGCGATGGGCAGGAAGTTAGATCTGTCGGGGCTAACGGACAACGAGGCGGAGCATGTGCTGCAAGTGGTGCAGAGGGACATGAGGCTACGCAAGAAGGAGGAGGAACGCCTCAGTGAACTGAAGCAGGAGCTGGACGAGGAGGGCAGTCGCTGCCTCCTGCTGTCACGGCAGAGATGCTTTAACCAGCGCTGCTGCATCCGCTGCTGCTCGCCCTTCACCTTTCTGCTCAACACAAAGCGCCAGTGCCACGACTGCCACTACAACGTCTGCAAGGCCTGCCGGGTCTACAACAAGCAGGACAAAGCCTGGCTCTGCTCCGCCTGCCAGAAGAGCAGgTTGTTGAAGACACAGTCACTGGAGTGGTTCTACACTAATGTGAAGACGCGCTTTAAGAGGTTCGGCAGCGCCAAAGTGCTGAAGACTCTTTACAGGAAGCACCTGGCAGAGCACAGCGTGCTTTCAGAGCTTACTGagggcAGCACCTACGAGGAGAGTATCTGCAATGAGGGCAGCATCTGTGGGAGCGACTCAACCTTCTACAGACAAAGTGAAGAGCACAGCATGGCAGAGACACTCACCGTGGCATTGCGGGTGGCAGAGGAGGCTGTAGACGAGGCCATTTCCAAGGCTGAGTCCGACACTGCCAATCAGGAGAAGCAGAATGAGGCTCACTATCTGCGGGAGCACAGAGGAGAGCTCATTGAGGAACTGGCCAAAACTATTGTGCAAAAAaTTATTAGTACGAGGAAGGCTTTGGCTGAGATGAGGGCAGAATATGACCAGGATTGGCCACTTGAACACAACACTGACCTTTATCATCATCATAAGTCCGACTGTGATCAAGCCTCCAGCTCCCTTAAACACCAACCAGGCCTCTGGAGGTCACACTCTGCCTTCTCCCTGTTGGACAATGACCCTCCAGGTCTGATACAAGACTCCTCACAGGCGCTAAAGAAGGATGGAGGTGGGTTAGCTATGTCAACCTGGAAGAGTGTAGACCGGCTGGACAACACTGgtgtgtccTCAGTGCTGAAGAGCCCAGACGGGAACTGGATCGCCCTGCAGAGCGCTCAGCTGTCTCGTCCCAGCCTGCTGACCAGAAGGAAGAGCCTAGTCTTCAGTGCCTTGGAGAGGGAGTCTGAAGTAGTGTCCGCCTACGAAGGCATGGGCTCTGACCTCGAAACCAAACCCGACCCTGACAGATCTTGGGGTGCCGTCCTCCAGGAGATCCACAGGAAGATGACGGACTCTAACTCCAACCTGCAGGACACCCGCGACAGGATCCCATCCCCACTGATGGGCCGCCGAGGCAGCAGAGATGATCTGTTTTCAGACTCTGAGGGGAACTGGAAGCCTAACACACCTGTGTTGGCTCTTTTTAAGAGGAAGGTACCCGCAGAGATCAGGCGACCTTCATCCTCCCTTAGGACCAGCATCATCGATGTGAACTTTAACGTGGAAAGAGCCGGACTGGAAGAGGAGAGCAAGGTGGCTGCAGAGCCGGATGTGGGAAAAGTCAGGAGATCGCGGAGGAAAAAGAGGAGTAAAAAAGAGTTGTCTTCTGTGCTGGATTACAGCAACAAAGACAACCATTTGCAACATCCTTCTGATGCTGCAACCCCTGAACCTTTTCACCTCGAGGGTGACATGACAGGACATGGAACAAATCAGATTGAGCAGGAGTACACGCTAAAGCTACATCCATTAGCAGGCCGCGTTTCTGAGTCCTCCACCGGAGAAGAAGAAGTGAGAGATGCTGGTAATGatggacagagggaggaaaagaGACGGGGGAGTGAGGACAGAGATGAAGAAGATGAGAGGCTGTGGAGGATGGAGATTGACTTGGATGAAAAAAgaacagaggaagagaaagacgTAGATGATAAAGAGATGAAATACAGATTATTCAGGCTCATCGCACAGTCCACACTCACATACTTCTCATCTACTGATGAGTTAGACAAAGCTGGTCAGagtaaagaagaatgggaagGAGACAGGGATGAAGATATGGATCAAAAGGTGAAAAAGACAGACGGACTTAGTTCTAAACTCTGTCAGCTGGAAAAAGAAGTCCGGGCCAACCAGTTCTCCTCCACAGAGGATGAGCTGGACAGAGTTGGCATCATTgatgaagagaagaagaagacaggcgaggaggaggaggacctgGCAGTGAAAGTGTGCCGATTAGCTAACCAAGCCAACGCCACCCAGTTTTCATCCACGGAGGATGAGTTAGACCGAGCAGGCAGAGGTGAAGAGGGGAAGGAAGCGATAGACGAAGAGAAGCTGTGGAAACTGGAGGCGGAAAAAGACGCCCATGCCGCTCAACTGCGTGATTTGGCCAGTCTAGTTAGTGCTTCCCAGTTTTCTTCCACTGAGGATGAGCTGGACAGAGTTGGAGAGAatgaggtggaggtggagcagGAAGTAAATGAAGTAGGAATTAAGAGGGAGGAAGCAGTGGGAAAGAATCGGGAAAGGAGAGAATCATTTGGAGATTTGGATGTGACAATGTTTGATTTAAGGTATGAAATTGAGGAAAGAAAGACGGAGAGCAGTGATGAAAAAGTTGAAGTTGTCCAACAAGATCAAACAGAGGTAGAGGAACATATACATTGCATGGAGGAGAGAGTAACAGATGAGAATGAAAGAATGGTAAAGGGGCATATATGTGAAGAAGTGGAAGTTATGAAAGAGGACAAGGCTAAAAAAGcaaaagagacagaggaaagaCAAGAGATGGAGTCTCTGCAAGCAGAGAAAACGGAGGAGATATTATCCTTACATGAGACAAAAGTCCAACAAGAGAAGTGGCCAGAcaaagaggaaggagaagagagacaggaagaggaaaagatTAGAGAAAGCAAAGGGAGTCAGGACACAGCAGACAGCGATGAGGAAGATGCAGAATTTCACAGAATAATCAGCAGCATGTTAATGATGACTTTGGATGACATGCAGGTAGAGACATCAAAGGATGAAGCTGCAGAAAATGGGAGCATAAATATAGAGCCAGAGGAAGTAGAGACCGATGAGAATGTAAAAATTGGGTTCGAAAATGGATTTGAGGAAACCGCTGTCGATGCACAAAGCACAAATGAATCAGAGGAGACAGAAAGTGCTAAAGGGGTCCAAAGTCAAGACGACAACTTGATGCCAGAGTCGGCTGTGAGAGAAAGACCAGGAGAAAATGTATGTGAGCAAATTCGAGGAGATATTTCCAGAAAAAAGGAGAGTGGAGATGCCACAGGTAAAAATGACAATCAGCAGGAAAAATATGCAGATGCACAAGAAAAAAGACCTTTAGCAATCAAAGAGACACGTAAGGATCATGACGAACAAGAGGACAGAAAAGTTACGACTGAGTGGAAAATGATAGAGACGCAAGAAGATACTGCAGAGGGAGcttttgaaaataaagaaacggaTATAAGACTGGAGGAAACCAAGGAAGAAAATGCAGATGACATGGAGCAGAGCAGCATCTCTTCTCTAAAGGAGGGTTTACTGTCACCTGAGGAGATTCAAAGCGGTAGTGACATGGAGCTTTACAAAACAATAGAGTTTATCTCAACTCTGCTGGAGCAGAGGTACACGGCGGTGTCTCTGCGCAGCATCACCACTGAGGTCCTGAAGGTGTTGAATGCCACTgaagagctgctgctgcagggggTGGAGGGAGGAGATGGCCCGCGACTTTCTAGCACCTTACTGCCCCCCAACACAGACCCCAAAAAACTGGATGAACAGTTCTCCAGACTGGAGGAGAATGTGTATGTGGCAGCTGGAGAGGTGTACAGTCTGGAGGCGGAGCTGAGTGACCTGGAGGAGTGTGCAAGGGGCATCTGCAGCGGGACGTCCGACATGGAGCTGTCCTTCCTGGAGGAGCAGATAGCATCTGCAGCTGCTAAGGTTCAACAGTCTGAGCTGCAGACTTGTGACATCTCGGCCAGAATTGCTGCTTTGAAGAGTGCAGGCCTCAATGTGGACCCACAACAGTCACGCTTCGCTAAGACCAAGACTATTCCAGTTACGCCTGTCACTGTGGACTCATCAAGACAGCTGAGAAGGCGATTACCTGCACCACCAGTGAAAGAAGACAAAAAGGAAACCTAAATCATCGACCCAGGACCTTTGCAGTACCTCCAACACAGCAGTGCCTTGACCCTCTCACTCTGCAGCCTACAGGCCGGTCTTAAGTTCCATTGCCTTAATTTCATTTTTAGACtaaacatgaaaacacaaataatacaggACACTAGTACTGTATGTCACTGGAGGAAACTGTTGATTCTCGTGTAATCTTACCAAAACATACAGTAGATGAAACTCCTTAACAGTTCTGAAAATGTATAGGCATCGATCAATCTGATATAGAGAAGGAGCAGGTTAAACCATCAGCTCACTAGAAAATcacaacttttgaacatgtgagttttaggacttttttttagatttccCAAAAAAATGAGAGAACTGGTGAAATTATTACATTGTATAACAGCATGTGTTCGAAAAAATCCTAATGTTTTAATAACACTTTTGAAAGACTTCATTTTAACATCATTAGCTGTCCATTTAACTTGCTGATAAAGAAAGCTATACTGTACAGTGACTGAAAAACACTAAATTATAAGCCACTATCTAAAACCTGCAATTTTTACCATTGTATCATAAATATACAGATTACACATGTGGGAACAATTATAGCATGTTAGAAAATTGTTGCGAGACTGTATCATGTCTAAAATATAGACCTGTGTTTTTTTCCATGGTTGTGGATGTTTGTACAGCAAACTAATCAGTAATTATGTTTTCTGCCTTTTATTATTAAGTTCAGAAAATAAAGTAGAAATTAAAAAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156312 lncRNA upstream 1948 18865126 ~ 18866134 (+) True G115923
TU156310 lncRNA upstream 25288 18842572 ~ 18842794 (+) True G115921
TU156276 lncRNA upstream 34340 18833543 ~ 18833742 (+) True G115889
TU156255 lncRNA upstream 142654 18720365 ~ 18725428 (+) False LOC120568911
TU156239 lncRNA upstream 173436 18694391 ~ 18694646 (+) True G115864
TU156330 lncRNA downstream 2710 18922753 ~ 18923170 (+) True G115931
TU156334 lncRNA downstream 11883 18931926 ~ 18933912 (+) True G115934
TU156382 lncRNA downstream 65685 18985728 ~ 18985933 (+) True G115971
TU156470 lncRNA downstream 246472 19166515 ~ 19168570 (+) True G116042
TU156472 lncRNA downstream 253015 19173058 ~ 19174369 (+) True G116044
XM_039816324.1 mRNA upstream 35043 18821096 ~ 18833039 (+) True e2f5
XM_039816504.1 mRNA upstream 47696 18803651 ~ 18820386 (+) True lrrcc1
XM_039816704.1 mRNA upstream 68249 18756216 ~ 18799833 (+) False LOC120568945
XM_039816431.1 mRNA downstream 49266 18969309 ~ 18984876 (+) True LOC120568750
XM_039816432.1 mRNA downstream 49266 18969309 ~ 18984876 (+) False LOC120568750
XM_039816430.1 mRNA downstream 68646 18988689 ~ 19013997 (+) True LOC120568749
XM_039816472.1 mRNA downstream 96996 19017039 ~ 19052242 (+) True LOC120568770
XM_039816438.1 mRNA downstream 147407 19067450 ~ 19104441 (+) True LOC120568752
TU156233 other upstream 194020 18672562 ~ 18674062 (+) False LOC120568691
TU156065 other upstream 513738 18305149 ~ 18354344 (+) True G115729
TU155940 other upstream 838187 18027280 ~ 18029895 (+) True LOC120567767
TU155758 other upstream 1427619 17407491 ~ 17440463 (+) False LOC120568596
XR_005640724.1 other upstream 2341654 16439025 ~ 16526428 (+) False LOC120568419
TU156400 other downstream 97015 19017058 ~ 19018726 (+) False LOC120568770
unassigned_transcript_559 other downstream 596810 19516853 ~ 19516945 (+) True trnar-ucu_13
XR_005640618.1 other downstream 1453192 20373235 ~ 20375633 (+) True LOC120567833
TU157037 other downstream 1962663 20882706 ~ 20915288 (+) False LOC120568904
XR_005640709.1 other downstream 2950910 21870953 ~ 21897391 (+) False LOC120568354

Expression Profile