RNA id: XM_039815910.1


Basic Information

Item Value
RNA id XM_039815910.1
length 3961
RNA type mRNA
GC content 0.50
exon number 9
gene id lrrc53
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 9343577 ~ 9352164 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGTCTCAGGTGACAGACAGCTCTACTGAGCATGCTCCACAGAGGGCCACGTAACTTGAGCTAGACAGACACAGTTCCACAGTATTTGCTACATCACTGTAGCAACCAGTAAATGATGGACTTTAAGCCCCACAGTGCTACAGATCACTCTTATGGATTAATATGTCAGAGGAGTGTACCATGTACCAGGTTCTTTTTAACAGATCTTGACAGTGATGCAGCTGTATGGGGTTGCAGCCCTTTGGAAGAGATGCTACCTCATCACCATGTTACCTCTACTCTAACACAACATGACCAGTATTTTGCTGATGTTGCTGCTGTCAGTCATCAGAACCCAGTGTGTGTCCCCTGTCCCATCATGCCCTGCTTCCTGTGTGGTTTGTTCTGAAGATGCCCTCATCTGTCACAGACTGGCTAACATTATTgacGCTCCAGGCACGACCCAGGCTCTGCTGCTAACAGAAGGCTCCATCTCCACAGTCCAGCCTGCTTCACTGTCTGACCTCAGCAACGTTACAGTCATAGGTCTGAGTCATAACCATATCTCAGTGCTGGGTGAGAAGCCCTTCAGAAACCTGCCGTTCCTCAACACCTTACTGCTGGACCACAACCTCCTGACCAGCCAGGCCCTACAGGGGCGAGCTCTGACCAATCTAACCAGACTAGAAGTCCTCGCCCTGGGCCAGAACCTTATTAACATGATCCAAGGTGTCTGGTTTGAAGGTAACAAAGCCCTGCGGAGCCTGAAGCTAGAGGGAAACTTGCTCACCAGTTTGGACTCTGGTTCCTTCCCTCTTAATGACCTCAGAGATCTGGAGAGTCTGGATCTGTCAGATAACCTGATATATCATCTGCATAGAAACACCTTTGGTAGGTTGTGGAGTCTGCAGACTCTGGATCTGTCCAGGAACCGTCTGagttctgctcctgctgaggcTTTTTCCTACCTCAGCTGGCTGACAAACCTCAACCTGGACCTCAACACATGGAACTGCTCCTGTCAGCTGCTTGAACTGGCGGCCTTCCTGTCCACCTTCATACAACAACCAGACAAGACCCTCTATAACGGCCGTAGGATGGTGTGTGTGAGCGCTGACAACCCGGCCGTAACCACAGTACTGGAGCTGACTGAGGCCAACTGTGTCCCATCCAATCAGAACATCACAGTACAGATAGAAGCAAGAGGCAGCGTGACGCCACAACTGTATGCTCGAGATCTGGCCATCACTGCGGTCGTCTGCTTCATTGGAGGCGTTGGCTTGACCCTGCTGGTAGTCCTGATCTGCTATCAAGTGTCTTGGAAGAAGAAACTGAAGGAAagtaaaagacagaaagaagaagaagagggaagCAGCACAGGGGTGAATCACCATGCCAATCACCTAGATGCCAGTGAAAAGAGGAGGGACCTCTTCTTGCAAGCACAAAGAAGCCAGCCTTGGGACAGGGAAGACAAGATGTTGGCTGCAAGGACAGATGTCTACGGTGGGCAGAATAGGTCCAGAGTTGACGAAAATGGCCATTTTGGGTGCCCGGACTGCAGCATCAAAGGACAGAGAGGGATGGACCAGATGAGAGCCAGGGGGAACAGCAGGATTaatggagggatggagacagaggaggaggaaggtgaGAAGAGGAGAATGAGGATGATGatagaggaagaaaggaggaggcTTGGGACTCAGAAGGGAATATCAGGCAGGGACATTCCCAACAAGCTTCTTTCTCACAGCAACACCAACTCTTCCTCTCATCCACGGAAAGACACCTTTAGTCAGAGAGCAGAGACCCTGGCGGACAAtcagacaaacagagaaatgggaGAGAGCTACAGGACTGACATGGAAGGTAAGACCAAAGGACATGAGACTGTACACTGTGAGGGCTGCCACAGGACATACAGACCACCAGAGCAGAGCATGAGACACGGGACGATTCACACCAAGACGAAAGACTCTGCTCTGTTTGATGGCTTCCCTTCTCAGTACAGACAGATCGACAGGGGTAGATATGATAACTACAACCAGTTTGACATGATGAAGAACACGGAGTTGAGAAGAGAACCAAGAAACGTAACCTTTGACCTGAAGAGCTCCAGAAGCTTAGAGCAAGGACGCAGTCAAGGCGAAGaccagagggagacagaggaaacaAGGAGCTCCAGAGACAAGGAGAAAGGAAGAGCAAAAAAACACGAGGCTAAAGTCCAGTCGAGCCGGTTACTGAAGGTTaaactaaatttgaacccgCTGCTAAAAAGCAAAGTCCATCCTAAGAGGAAAAATGAGCTGGGCCACTCAGAGGAAAGCAGCTCAAAGAAGAGTAAAGATAAACGGCAGGATGGAAAAGAAAGAAGGGAgagggaaaggaaaggaaagtcTGGGGAGAAAACAAAGGGTAACAGTGAGAAGGTAAAGAAATCCACCAAGACTAAAGGATCGACCGAGGGtggggaggaagagaaggaagaaaaagacagaggagaaggaggacagAAAAGCAAAAAATCATCTAAGCAGAAAAGAGACGAGCAGGAAAATACAGAAGTTAACCAGGGCGAGAATCCACACCCAGAGAACTCCCAACCTGCCGATACCGCCAATACTGCTGACCAATCAGCCTGTGCTCCTGCGATTGGACAGGGACAAGACTTGCAGGGTGGGAGTATTCAGTCTCAGGGAGCTGGATTGGTTCTGGGGAGTTCGCAGCTCTCTTCGCAGCATCCCTTATCGCTGTCTGCCACTGACAGGAATCACACTACCAACCTCTCACTGCTTGGTTTAGCAAGCTCACAACTGACTGGCAGCAGCCTCTCTCTTCAAGGAGGGAATCTTTTGCTCAACACCATGGCCTCAGGATCTAAGGCCCTGTTCCCCAGTGGCCCGGCTAAATCTGTCGCTCCTAGCATAGCAATCAGCGGCGCCCCAGACAGCTTCAGCAGGCAACCCGGAGTAGGCCTCGTGTCTCCTGCTACCTCTCTTCTAGCTAACGCTGTACTTGCTAACCCATTGCAAGCAAGTGCGATGCATACCTCTGCTCTTCATATCTCCCAGCCTGCAGGACTAGCCTCGAGTTTAGCAGCAAATCCTGCACCCGTGCAGTCCCTCTCGCAGAGCAAGCCGCCTCCTGACGGCTCTCCTCTTGCGGTAAGACTGATGTCTGTTCCAGGCCAGGAACCGGGCCTTCAGACTGGGGACGGAGTACTTCAGAGACTCACTCTCCAAACTCAGGTACCTCCAAGTGTGGATGGTTTATCTGGGGTGACCCCTCAGGCTCCTGGACCAGAGACCACTGTGGAGAATGTGTCAAACAATAAAAGTCAGACAGAGTCTGGGCGTGTGGATGGTGGGTCCACCGCCCACATGTCAGCTGAGGGAGGGGCTCTAAGTGATGGACTTGCTGCAGGGTTGTCAGGAGGCATCATGCAGGCAGCAGATGCGTCTGTATCAGGTGTCCCTGCACCCATAACGTCTACACAGAGCACATCCTCCACCGGGGATGGATTTGGAGCTCCCGCACTGCTGCAGCAGGAGTACCTGTCGGAGGAAGAAGGATCCTCCCCCAGGAGGAAGCTGAGGCTGGTGATTCCCGAGAAGACGTCCGACCGACCACCCACTGCACTGGAGAGGAAGATACGCTAGCTGCTCACATCATATTTGATGGCTGAAACTTTATGGAGCAGTAGCGTTTTACGAAAAGTCAGAAGAAGCCCTTTTAGTCTTAGATCAGGTGAAGAAAAGACTGATGCCTTCATACGTTCTTAATGTGATGTTACGAACtgctaaaaatgtaattttgtgcGTTTTACAGATGTTTGGTGTAGTAAACACTGAGTAAAAAAACCTAGGTGTTATTTTTGAGTTTCAAAGTTTATTGTTGACTTTTGTATCAGTTGACATAAATCTCACCTTAAAGCTAGTTGGTaacttttcattaaaaaaaaacctttttgtcGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152657 lncRNA downstream 175158 9114513 ~ 9168419 (-) False chd7
TU152589 lncRNA downstream 280338 9060895 ~ 9063239 (-) True G113194
TU152561 lncRNA downstream 369917 8971608 ~ 8973660 (-) True G113168
TU152518 lncRNA downstream 399825 8943485 ~ 8943752 (-) True G113129
TU152506 lncRNA downstream 472654 8870700 ~ 8870923 (-) True G113118
TU152841 lncRNA upstream 16902 9369066 ~ 9388932 (-) False G113356
TU152826 lncRNA upstream 18811 9370975 ~ 9423396 (-) True G113350
TU152827 lncRNA upstream 18811 9370975 ~ 9423396 (-) False G113350
TU152834 lncRNA upstream 36146 9388310 ~ 9419777 (-) True G113356
XR_005640718.1 lncRNA upstream 62605 9414769 ~ 9415821 (-) True LOC120568403
XM_039815633.1 mRNA downstream 112560 9200888 ~ 9231017 (-) True rab2a
XM_039816406.1 mRNA downstream 148705 9116824 ~ 9194872 (-) False chd7
XM_039816407.1 mRNA downstream 170228 9114384 ~ 9173349 (-) True chd7
XM_039816785.1 mRNA downstream 315710 8996763 ~ 9027867 (-) False LOC120569001
XM_039815914.1 mRNA upstream 154 9352318 ~ 9358533 (-) True cryz
XM_039815912.1 mRNA upstream 48623 9400787 ~ 9510497 (-) True LOC120568397
XM_039815913.1 mRNA upstream 141054 9493218 ~ 9510497 (-) False LOC120568397
XM_039814857.1 mRNA upstream 182101 9534265 ~ 9537562 (-) True ankrd45
XM_039814856.1 mRNA upstream 199828 9551992 ~ 9563741 (-) False fitm1l
unassigned_transcript_549 other downstream 448454 8895050 ~ 8895123 (-) True trnan-guu_8
unassigned_transcript_547 other downstream 451573 8891931 ~ 8892004 (-) True trnan-guu_6
unassigned_transcript_540 other downstream 470095 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_538 other downstream 471072 8872434 ~ 8872505 (-) True trnag-ucc_9
TU152428 other downstream 553535 8780452 ~ 8790042 (-) True G113070
TU152846 other upstream 49578 9401742 ~ 9403612 (-) False LOC120568397
TU152847 other upstream 49578 9401742 ~ 9495752 (-) False LOC120568397
TU152848 other upstream 154884 9507048 ~ 9510481 (-) False LOC120568397
TU153067 other upstream 1534843 10887007 ~ 10888847 (-) False LOC120567758
unassigned_transcript_557 other upstream 1534925 10887089 ~ 10888952 (-) True LOC120567758

Expression Profile