RNA id: XM_039815921.1


Basic Information

Item Value
RNA id XM_039815921.1
length 6626
RNA type mRNA
GC content 0.48
exon number 25
gene id efr3a
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 4895261 ~ 5063854 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCAGCAAGCAGCACACACTTCCGTGTTGTCTGTCACCGTAAAGCAGGAAGCACTGTAGTAATGTGTAGGAGGTTATCTGGCCAGCTTGCTGTTTAACGTTACCTACAGGTGAAGTGAGAGAGCCGGAGAAGCTACATGGAGGCTAACTAACGCAGGACCAATCGGTGCTCGGCAAAACAGAGGAACTGCGGTACATTAGCACCAGGATGCCAGCCgGAGTGTGTGGCTGCTGCGGGCCGCTCAGGCCGAGGTACAAACGCCTGGTGGACAATATCTTCCCTGAGGACCCCAAAGATGGCCTCAGTAAATCGGACATGGAGAAGCTGACCTTCTACGCCGTGTCGGCGCCAGAGAAACTGGACAGGATCGGAGCTTACCTGGCCGAGAGGCTGAGCCGAGACGTGGTGCGACACCGCTACGGGAATGTGGTGATAGCCATGGAGGCTCTGGACCAGCTGCTGATGGCCTGTCACTCCCAGAGCATCAAACCCTTCGTGGAGAGTTTCCTGCAAATGGTGGCCAAGCTGCTGGAGTCCAGAGAGCCGGACCTGCAGGTCCTGGGGACCAACTCGTTTGTGAAGTTTGCCAACATTGAGGAGGACACGCCATCTTACCATCGCCGCTACGACTTCTTCGTGTCCCAGTTCAGCGCCATGTGCCACTCTACTCATGAAGATACTGAGACCAGGACCAGGATCCGTGTGGCTGGGATCAAGGGTCTGCAGGGCGTGGTGAGGAAGACGGTGAATGATGAGCTGCAGGCCATCATCTGGGAGCCTCAGCACATGGACAAACTGATCCCGTCCATGCTGTTCAACATGCAGGACAGCGAAGACCTGGACAGGGCGGGGCACCCCAGCACGCCTTCAGGGTCAGTGAGTCAGGACGGCGAGGAAAACCCGGCGGCGTTGGCGGAGAGCTGCTTCCGGGAGCTGCTGGGCCGGGCCGCCTACGGCAACATGAACAACGCCGTCCGGCCCGTGCTGGTTCACCTGGACAACCACCACCTGTGGGACCCCAATGAGTTTGCCGTTTCCTGCTTCAGAATCATCATGTACTCCATCCAGGCTCAGCACTCCCACCACGTCATCCAACAGGTTCTGAATCACCTGGACACCCACAACAAGAACACGCCGCGGGCCCGCGCCGGCATCGTCCAGGTCCTCCTGGAGACGGTGGCCATCGCCGCCAAAGGCTCAGTGGGAATGATTCCCGAGACCAAAAGAAGTGATGGGTTCACCTTTGAAAGTGAAAACACGACTCCTCCCCGTCTGTGGCTCGGGCCCACAGTGCTGGAGGTGTTCAACACTCTGCTCAAACACCTGAGGATGAGCGTGGACTTTGAGCTGGGCGAGAGCTCGAGGAGAAACTCCAGCACCAGCGTCTCGTCCGGCCGCGGCAAAGAGAGCGAAGAGAGAATCGTCCAGAACGCCATCATCCAGACCATTGGCTTTTTCGGTGGAAACCTGCCAGACTACCAGCGAGCTGAAGTCATGATGTTCATCATGGGCAAAGTGCCGGTGTACGGGACACCCTGCCACACCTTGGACACCGTCAAGATCGGGCATCAGGGTACCAAGCGGATCCAGACCATGCTGCTCAGCTCCCTCATCATGGTAACCTCTGGCTTTAAGTCCAAGTCCATGGCCGCTGCGTTGCCGTCCCCGTTCCTGGATCCGctcttctccatctctctgatgGAGGACAGCGAGCTGAGGCAGCTGGTGTTCGAAATCCTGCACAACATCATCGACCGCCATGACAACCGCGCCAAGTTACGCGGCATCAGAATCATCCCTAATGTTGCAGCATTGAAGATTAAAAGAGAGAAGATTTCCAAGCAAGACGTTGCATTCATGAAGAAGCATGGCCAGCAGCTCTACCGCCACATCTACCTGGGCTGTAAAGAGGAGGATAACGTCCATAAAAACTTTGAGCTGCTCTTCACCACGCTGGCCATTCTGACCATCGAGCTGGCCAACGAGGAAGTGGTCATCGACCTCATCCGGCTCTCCATCGCTCTGCAGGACATGGCTCTGGCTAACGAGGAGAGCATGCCGATGTTCATCCGCTGTGGCATCATGGCGTTGGTGGCGGCGTACCTCAACTTCCTGAGCCAGATGATCGCAAACCCTCCCTTCTGCCAGCACGTCAGCAAGGTTATTGAGCTGAGGAGCATGGATGCTCAGCACCTCCTCCCAGAACACATCTTCAGAGACAAGTGTCCaATCCCTGAATCTCTGGACAAGGAGGACCGACTGCTGTACTTCCAGACAGCCGACATGGCCGAGTGTCTGGCAGGACCGGGATACAACGCAGAGAGACTCTCCATTCCCTACATCCCGCAGGTCACAGATGAAGATCGTCTGACCAGGAGGAAGAGTTTCGTAGACACAATCTCCCTTCAAGTGGACATCGTGTCCAACAGCCTTCCAGACAAGTCCCAGCTGGCGGAGGAGATCACGTTCGAGACCCTGAAGAAAGCCATCGATACCACGGGTctggaggagcaggagagggagaagaggcGTCAGGTGATGGAGAAGTTCCAGAAAGCTCCGTTTGAGGAGATAGCTGCCCACTGCGAGTCCAAGGCCAACATGTTGCACGACCGGCTGGCGCAAATCTTTGAACTTACAATAAGgCCTCCACCCAGCCCGTCCGGAGTGGTTTCCATCTCATCGGGACACACTCAGCACCAGTCGGTCCCCGTCTACGAGATGAAGTTTCCAGACCTGTGTGTCTACTGATAACTCTGCAGCAATaacatctctcacacacacgcacacacgcacaccttcACAAAAGAAATGACGAGAGAATTAACTACACAATTTACACAAGTTTCCTCTACTCAGACCAGCACAAGGGTGTCACGCAAAATGCAGCAAAACAGCCATTTTCAATTTGATATAAAGCCGAGTTTgcctatgcaaaaaaaaagctaaacttCCTTAATCTCGTCTCTTCTATCTTTAAATCCAACTCAGTTTGATATTTCGTTTGCGAGCCTAAAATGTCAAAACGTTACTTCTGAATCCTCTAAAAACCTCTCGTTCTGCTCTTTATTAAATACTTGGATCCATTATTACGCCTAAAGCAGACCGGCGTTAAACCCTCCAGCTCTACATAAACTGATTTGCTGCATTTTGTTGCCTGACTCTCATCCCTGAAACTAAACGAAAACCTATGAGTcaagaacaaaagaaaagaacagcTTCCGCTCTTGAGATTTCAGTGTCTAGACGCTTAATCGGATGTTGCTTCACACcttgtacagtacatacaccgTAGTCTACAATTACACTCTCCTACGAACGGCTGAAACCAGTTTCAATCTTAAAACTTGAGTCTGGTTTTAGGTGTGACGCTCTTATATTCAGAGCCAGCTTCTGCCTCTTCAGTATGTGTTCTCATGTTGATAAGTAGGCGTCACAAATAGGTGAAAACGTACAATATATATTCGTTGTCATAGGAAAATAACTTCACCGGTGGTAGAAGGTAGATTAGTTTTAGGCTCACCACTGTTCAGGCTACTCAGTCTTTGCTATTTAAAGGAATACAAGCATGAGAACTACCAGCTGAGTTGTCAGagataaaagaaaagcaataaacTGCTTGGCAGAGACTCTCCAAAGAGACAAGCTAAAGGGTGTTTAGTTTTCAACGCTGCTCGGTAGAAATGGCTCGCTCACGCTTGCCGATTTTGGGTTGGCTTCGGATGTGGTGCGTTCCAGAGCTCCTGAAAGTGTCAAATATTCAGACTTTGATGTTGGAGAGCTTCAGCGTAACTGTGTGAAACCTTTGCGAATCAGACCAAAGTAGCTTTTTGAAATTCCTTTTTTCATCATTGAGTAACGTTATCTCTGTCAAAATAACCTGTCTGGTAAATGGTTCATCTTTGGTTTAAATATGTTATACTTACAGTAAACCTGTAAGGTTGTGTTCGcacttggcgtctttttttaagctgccagcgtctgttttacattataatcctaGTGTGGAGTAAACCGTGTTTTCAGTAAAGTCCTGAGAGCTTTTTTAAACGCCGCCGCCGACTTCTTTTCTGCAGCTCGGATCAAATttttaaagttgaaaaaagttcaacttttctgaaaagaaaaaaaaaaaagccctacGTCAAGCGCTTTTTTGAGTAGCCAGACctgttgtaaaaatgtaattgattTGAATTGAGCCGGAGCACAGCGAGTTATATGATATGAGTGGTGCTCCCTGTGCAGGGAACTAACTTTGTtgtatctaacgttagcacctctctctctttctgttctttctctagctcgctccaccactttgtttaatctaacgttagcattagcaccACTCCACATAGCGCTCTAGTATACTGTAGCAGACGCTAATTTTTGTTCTCTTTTGGATCCAAAATGCTGccagcttttttattttattttactacaaAGCGCCCTGGTCAATTTTTACTTGTCAAAAAAGACGCCGAGAGCGAACATAGCCTTAGGAAGTATGATTTGACAGAGAAAATCTCACTCAGTTTATTTATCAGCGTGTTCAACATTTTCCATTCCTCGCTCTCTTCTATATTGGTTTACAGTCTCAGAAACCCAAACCTGATATTGTCTCAGTGTAATGTGCAGGATCACAAAAGGAAAACTGTAGATAATCTCCATCACCAGCCTGAGTGTAAACATAACCCTAGTTATATCAGCCGATGTcttcatgttgtttttaaacTGATTTGGAATAAAACCTTTAAAGACCTTTTAGGGATAAAATGTGACTGGATCGTTCACACGTCTTTAGTCGTGAACATACACAATGAGCTCTTAAGGgatgtaaatatattacattctTATGTCGAGACTTTTTCCGTACCTGTACTCTTAGCTCAACACATTTCAGCACTTATTTACTTGCGTTTAACTCTTAGTTGTCCACTTTGTTTCAATTCAGCCCGACATTGTGTTCATGTTAGCCGATGTCTTGTTAGGGGGAAGCTAGTGACGTTTCTGTCCCACTGACATACGTTTTAGCCAACATAGAATTAGCCGCAGCAGTTTTTCAcaagaataaaataaagaaatatatgATTTAAAGAATTCCTATTACTGTAAGTCAACTCACAAAAACCTCAGTCCATTTCAATCGCACTTGCTGTCGTTTTTCTGAAGCTGTTTTCCCCGGATTGAGttaggcagctagctagctaggtaggAAGATGACGTCCCCCTACAGTACGTAACCCCACAAACAAAGCTCTGATTACAGAAATAGCAAAACAGAAATAAGCATCAGTGGGCGCCACGCCCAAGCCCAGAGATGTGGCCGGCGATTCAGAGGTCTAAAACCAGGCtaaatagtgcgttccatttgtactccgAAGTCAGGCTCTGGTCTTGATCTCCCCCCTAGTGGATACACTTTGAAGTACGCACAAAGTCAGCCAAGTATGTGAAAAATACTGCTTGTAAATGTAGTATATGCCTTGTTAAAACTGAGCACTTCCGTgtagtattacctggggacatCTAGTAAATTGTAATAATTCcagaggttgtctgtgatcttaatcctgtGCACCTGTAATTTGTCATGTCGAAATTCCACCGCAAATTGCAGACGGTCGCCAAACACAGAGGCTGTGTGATAATATCAGTCCCTTTCAAATCAGCTTCTCTGTGATTCGGGGTCGTGTTGGCTGCATTGGCAATCATAAAAGAAAGTTTTTACATCACATGTGGGGGATTATGTCAGTAAATtcaagtaaaatacagacttcactGATTCGGTGCAAATGTGAAACGCAGATGTGGGGCggtgatttttttaaatctctgtcCCCTGGTAATACCTGTGCAAATGGGGCTTCACTTTGTGATTTGAATCAACATGTAATTGCAGCTGTGTGGCTGAAGAAGTCCTTTCTGTGGGATTAGATTTCATAGGGCAGGATGACTTTGTTCTCTACTCTCTGTGCACAGTTGATACGTTGCCTATTTGCGTCTCCATTTCGAACCCCGCAGCTTTTTAGCTCCACACAGCTTTGTTGGCAGCTTctaaaagacaaagacagaagtCGTTCCGCTCCTGTTCCATAATTTCAAAATGcctaaatcaaaaaaaaaattatcccaGATGTTATCAGAGCAGGCGTCCTGCCGCGTGGAGTTTCGGATACAAAGCAGTGACATTTTGGGATGATTTAATCATCTGTGCTTTTTCAACACTTACCACAGGGCCGTGTTTTGTTTTGCGAGAGCGGGATAGGAGGCAGTTTTTTTTCGGGAACGAGATGCTTCTTATCTGCTGGAGCTGCAGCTGTGATCTGTTTATAACAGATGGTTATCGGTGTCTCCTCTGATCTGAGCTCAGTGGCGGAAGAAAAACCCTCTAGTTGGGAAACTTGCCGCCATCATTTTGTACGAGCAGCTGTGCAGAGCACATCTTCACCGGACGCTTTAttccaggtcaaaggtcagcgtTTCCTTTCACTCAGAGATGATTGACTGGTTTGGGAGTAgtcctctggtttattggcatttctttaaaccaatcacagtcgtcttgagcggtgctaagcaccggacggagccacggtgcctctgctaaatagtctcggga

Function

GO: NA

KEGG:

id description
K21842 EFR3; protein EFR3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640594.1 lncRNA downstream 8993 4881968 ~ 4886268 (-) False LOC120567597
XR_005640595.1 lncRNA downstream 12031 4872751 ~ 4883230 (-) True LOC120567597
TU151214 lncRNA downstream 90302 4804638 ~ 4804959 (-) True G112162
TU151189 lncRNA downstream 98864 4792332 ~ 4796397 (-) True G112142
TU151169 lncRNA downstream 229799 4633890 ~ 4665462 (-) True G112122
TU151238 lncRNA upstream 4120 5067974 ~ 5068299 (-) True G112183
TU151240 lncRNA upstream 12806 5076660 ~ 5077815 (-) False G112184
TU151242 lncRNA upstream 13269 5077123 ~ 5077815 (-) True G112184
TU151249 lncRNA upstream 90049 5153903 ~ 5155029 (-) True G112189
TU151251 lncRNA upstream 131758 5195612 ~ 5195814 (-) True G112191
XM_039814910.1 mRNA downstream 368080 4519361 ~ 4527181 (-) True si:dkey-7l6.3
XM_039814909.1 mRNA downstream 384647 4505722 ~ 4510614 (-) True LOC120567837
XM_039814908.1 mRNA downstream 384650 4506308 ~ 4510611 (-) False LOC120567837
XM_039814907.1 mRNA downstream 395472 4487328 ~ 4499789 (-) False LOC120567835
XM_039814906.1 mRNA downstream 395472 4487328 ~ 4499789 (-) False LOC120567835
XM_039816107.1 mRNA upstream 44187 5108041 ~ 5148701 (-) True LOC120568537
XM_039816265.1 mRNA upstream 360137 5423991 ~ 5486661 (-) True basp1
XM_039814557.1 mRNA upstream 620362 5684216 ~ 5699240 (-) True march11
XM_039815113.1 mRNA upstream 641750 5705604 ~ 5718217 (-) True znf622
XM_039816131.1 mRNA upstream 659879 5723733 ~ 5746068 (-) True LOC120568546
TU151058 other downstream 611178 4267538 ~ 4284083 (-) True G112046
TU151047 other downstream 656591 4238102 ~ 4238670 (-) True G112043
TU151299 other upstream 600150 5664004 ~ 5668687 (-) True G112233
TU151457 other upstream 676791 5740645 ~ 5746081 (-) False LOC120568546
TU151454 other upstream 729309 5793163 ~ 5852447 (-) True G112328
TU151456 other upstream 729309 5793163 ~ 5852447 (-) False G112328
XR_005640645.1 other upstream 1110702 6174556 ~ 6175551 (-) False LOC120567959

Expression Profile