RNA id: XM_039815938.1


Basic Information

Item Value
RNA id XM_039815938.1
length 6178
RNA type mRNA
GC content 0.60
exon number 17
gene id LOC120568419
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 16439025 ~ 16527682 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGACAGTGGAGCTGAGAGGGAAGAAGATCAGACTACAGATATGCGTTTCCTCCAAAGGGGCTACAGGCAGAGGGGACTACAATGACAACCTGGTGAATGCAGACGAGATGGAGTAAAACATCAAGCACGGCGCAGGATGCGCACCCCCAGCCCAACAAGGAAGAAGGTAAAGCAACCTTGCTGTTTTTCTGGTGTCGCATGTGAGAGATTTTCCGCGCTGCTGTGGATTGATCGTTTCCTTCATCGCCCTCCTGCTGCCGGTGTCGGTGTATAATGGAGAGCTCCAATGGCTCTGGCAGCGACACCAAACCGCAGAACCACCAGTTGGAGAAGAAGAGACTGAACCGAGCGCCCTCCCCGGCCAGACCTTTCCTCAAGGATGTGCACTCTCGCTCCACCAAACCACCTGCCATCGTACCAAAATCGCCCAAACTCAGCAAGCAGCAGCAGTCTGCCTCAGTGCTCTTGGTCCATCCGAACCGCAGCTCCAGACGCAACACAACCGGGGCGAAAGAGAAAACATACACGGCAAAAAGTAACACCAAGTCTTCTCTCGTAAAAAAGCCCACAAAGGTGCTCCAGCATGCAGCGGCCGAGCCCAAACCCGCCGGCATCAAAGCGGACAGCACCAGCAGTCCGATCCTCGCCAAAGGCAAGAAGGGGAAACTAGCCTCGGGATCCCCAGGCCCTCTCAGCCATGGATCCCCGATCCGGGTACCGACCGGAGCGCCTCTGGGCCGGGTCAGCCAGACTGACAGCAGCTCAGACCTGTCAGACTGCCCGTCTGAGCCGCTCTCGGACGAGCAAAGGCTGGCACCGGCCGCTAGTAGCGACGCCGAGTCCGGTACCGGCTCCAGTGACAGGGATCAGGTGGGAGGCGATAATCCGCTGCGGGCTGAAGCGACCGGAACGGCTGCTGTCGCTCCATTGCGCACAACCGAGGTTTCCGCCGCTAAGGGAAGCATGTCTCAGGCTCAGCCCGCTCCGGGGGCGCACGGAGAGAAACGCAAGCAGGAGAAACCCTCATCAGGCTCACAATTCAGACTGCCAGGCACCAAGAATGTAACTGAGGAGGACCTGCTGCGGGAGGTGGAAGATTTGAGATCTGAAAACGACTACCTCAAGgaTGAAGTGGACGAGCTGCGGGCGGAGATGGAGGAGGTGCGAGACAGCTACCTGGAGGAGGAGGTCTACCAGCTGCAGGAGCTGCGGAGGGACCTGGACCGCTCAAACAAGAACTGCCGCATCCTGCAATACCGCCTGCGGAAGGCAGAGCAGAAGAGCCTGCGGGTCGCACAGACCGGCCACGTGGATGGAGAGCTGCTCCGTAGTCTGGAGCAGGACTTGAAGGTGGCTAAAGATGTGTCGGTGCGTTTGCACAACGAGTTGGAGAGCGTGGAGGACAAGCGCAGCAGAGCTGACGATGAGAACGAGCTTCTCAGACAGAAGATCATCGAGGTGGAAATCTCCAAACAGGCGCTGCACAACGAACTGGAGAGGACCAAAGAGACTGTACTGAGGAGACGAGGTAGCAGGGAAACATTTAAAGACAAGAAGTCCATGACTCAGGATGACAGTGCAGACCTCAGGTGTCAGCTTCAGTTTGCCAAGGAGGAGTCCAGCCTGATGAGAAAAAAGATGGCGAAGCTGGGCCGGGAGAAGGACGAACTAGAGCAAGAGCTGCAAAAGTACAAGTCAGTTTACGGGGACGTGGACAGTCCCCTTCCCCTCGCCGAGTGCTCTGGTGGTGGTCCTCACACCACTCGAGAGGCTGAGCTACGATTACGGCTCAagctggtggaggaggaggccaACATCCTGGGCAGAAAGATTGTGGAGCTGGAAGTGGAGAACCGCAGCCTACGGGCAGAAAACGAAGACATTCGCTGTCAGTATGAAAGAGACTGCTTTGGGCGGGAACCCTTCTCCAGCATGCCCTCATCGCCATACGGTGGTGATGCGCTGGATTCAGCAAGTGAGCTTCGTCGCCATTTGCAATTtgtggaggaggaggctgaGCTGTTGCGCCGCTCCATCTCAGAGATTGAAGACCACAACAGGCAGCTGACATCTGAACTCAATCGTTTCAAGTTCGGCCCCTGCAGCAGCTCTGTTGGCGAGGAGGGTAGTGAGGGAGGATTATTTAAACCTGGGAATGGGGGGAATGGTAATGGCTCCAGTAGCGGGGTGATGATGGAGGAGCTTAAATCAGCCAGGATGCAGATCAATGAGCTGAGTGGAAAGGTGATGAAGCTGCAGTACGAGAACCGAGTCCTCATGTCCAACGTCCAGCGTTGCGACCTGGCTGCACACCTGGGCCTCCGCACCGGCAGCCCTCGAGACAGCGACGCAGAGAGTGATGCAGGCCGGCGAGAAGCCGCTGAAGAAGAGGAGGCAGGGCAACTTCTTCTCCTCCACCCAAAGAGAGAGGGCCCTATTGGTGGCGAGAGTGACTCTGAAGACCTGTTTGAGAAAACGGCAACCACCTCAGGGTTCGGAAGCATCAAACCCTCAGACGGCAGTGAGCTCAGCGCCACTGAACTGGCCAACCGCAGGAGGGAAGAACGGGAGTCGTTCACAAACGTGAAACGCGAGGCGGAAAGGCTCGGGAAGACGGTGGACCGTCTGATCACGGACACCGACAGTTTGATCTTTgagggcaggctgctggtgacGACAGGAGAGAGCCTGGAAGGAGATGCAGCGTCTGGATCCAAACCAGACACCCAGGTCCTAGACACCATCAACACTCGCATGAAGGCTTTCAGCACTGAGCTACACATCTTCATGGAGAAGCTGGACCATGTAGGGGAGGGGCTGAGAGAAAGGACAGACGATCTGTCACCTATGCCAAACCTCACAGAGTCAAGCAGTTTCCTGTCAACAGTCACCTCCATGTCCCGTGACTCCCCCATTGGCACTTTTGGAAGAGACCTGGTGACGGACTTCCAGTCCGGTCAGAGGGATGAGCTGGAGTGGCGTCTAGGACAGGAGCGAGGCGTGGAGccccagagccagagccagggTGGGGGCCAGGCCCAGAGCAGGGGAGCCACAGGACTCACTAGGTACCACAGGCCCCTGGCTTTAAGAGCAGAGCTCCGGGACACGTCTGCTTCTGACATCCAGTTTCGTCTGGATCATGAACGAAGGCTGAGAGCTGCGATGGAGGAACGGGAGGCTTTTGTTTCTCTGCCTCAGCAGGAAGATGAGCGtctgcgtttggaggcccagcGGGGAGGTCTGGAGCTGCAGGGACTTCAGACTCATGAGGTGCCCTGGCCTCAGGAGAGAGCCATGCTGCAACAAGAGGTCCGCCTCTTCCGACGCAACACCATCTTCTTCTACATGAAGCTCAGGTGGATTCTCATGCACTGGAGGCTCGGCCGCAAGGACGACCCTGGAGAGGAGAGGGTGCACCCGGAGTTTGAGAAGTTGGAGGGCATCCCAGAGCTGGGAGTGATAATGGAGCAGGCGGAGGGGGAGTCGGATCAAGACGACAGACTGTGTTTACCTCAAACTCCTGGGGACGTCCCCGACCCGGGGCCCATCATCCCCCTGATGTCACCTGATCGACACCTGCGGCATCAAAGACAGTTTGGGGAGAACCGGCAAGTGCTGCAGGCCCTGCGGACGCTGCTGGAAGAGTTTCGAGACGAGCTGCGGGAGGAGGAGATGCGGCGATGCCAACTGCAGCAGTCCTACGCCAATGACAAAGCCGCCTGGGAGGTCAAGTGGGCAGAGATGAAGTGCCAGTTCGCCCAGTTGGAGGAGAAGGCCCAAGGCGAAGTGCGAGGTGAAGCTCAGATAGGTGATGAAGAGGAACCTGCCGAAGACCCCGAGTGGGCTATAAAACTGGAACGTGAGGAGCACCGGCGTCTGCTGGCCGACAGCCACAGCACCTCCCTGGACCTGCGCTGGAAGCTGCAGCACGGAGAGAAGAGGTGGAGCCGCGAGAGGGGCGACCTGCTGGAGCGCTTCGACCAAGAGCGGCAGGAGTGGGACGGCAGCATGAGGGAGCTCCACCGCAAGATGGAGAGGATGCAGAGAGAGCTGAACACCCGGCGAGGTGAGGGCATCGACATCAAAGATGGTGGCTCGGACCACAGAGGTGTTTTCTCTCCTCAGGACAGTCCCTGCAACGCCCCCCGGTCGCCACGCTCCCCCTGTACGTCCACCCCCATCCCTGCCCCCCCCATGCGCTCCCACTCTGACTCTGAGGCCATGCTGGAGGAGCATGGGGCTGCGCTGAGGCTGAAAGGCCCAACAGAGAACCTGTTCCTGGACGCACTGTCACTGGACCCCCTCAGCAGtctggacgtccctccacccTCCAGACTGGAGGGGGAGAAGAGGTTCCCCTGCATGAAGGAGGCCCTGAATGAGATTCCGGAGAGAGAACTTGATCCTGCGACCCCAGAGGACGAGATGGGTGGTGGGAGTCTGTTCAGAGCTAAGTCTGTGTGCTCCATGAGCGACTTCCAGCGGTTAATGGACAGCTCGCCGTTCCTCCCTGACAAGACTCGCCACGGTGATCTGGGCCAAGACGACGTCACCCCGCCTTTGTCCCCAGACGACCTCAAGTACATTGAGGAGTTCAATAATAAGGGCTGGGACTTCCCATCATCCGCCTCTGGCCCGGATCCTGCACGAAACATGTGGACAGACAAACCCCCCGAGGCCCGGGGAGGGGAGCTCGTCCTTGAACCATTTCAGCCAGCGTCCTGGTTCCTCACCACCAGCGCCACCCTGACCACCAGCACCCTGAGCAGCCCTGAGCACTGCCACAAGTCCCCGCTGAGGGGCAACGGAGCAGGGGAGGCAGGGGTGGGAGTGGAGCACTATGGTCATCGCATGCTCCACAGCCCCACCAGATCTGGGGCAGCTGAGTGCCCTACTTCCCAAGACCCGGACTTCCTGTACGCCAAAGGGACCAAAGCCAGGAGCGGAGGAGAGGCTGGGGTGGGAGCCAGCGGGTCAGATGAGGTGTTCAGCAGTGGGAGGTGGGCATGTGGGCTCCTGGAGGGTGGGGGGTTGAGGACTTCTCCTAGCCAGTCTCCTATCTGCCCCACTGTGGGCTACACTTCCTCTCTGGAGCTTCAGCTCTCCAGAAACATGAGTGACGACATGAAGGAGGTGGCCATCTCTGTGAGGAACGCCATCCGTTCACCGCCAGGGCCCATCATCCGAGACACCGCCTGCCAGACCAACGGATTCACCACACGAGGTACTCAGACCACCCAGACCATCAGTGTGGGTCTACAAACGGACCTGTTGAGGAACCTGACCAGCAGCCCCCACCGCTGCCTCACCCCGAAAGGCGGCGGCACGCCGATTTCTTCCCCGTCACGCAGCCTGAGGAAGGTTCAGTACTCTCCTGTCGTCCAGAGTAAGTTTGAGCGACCCTGCTGCTCGCCAAAGTACGGCTCACCCAAGCTTCAGCGCAAACTGTCCACATCCAACAAGGCTGAGCTACCCAACACGAACCGCGCTCCCACCCCCACCACACCGCAGAAGGGCAACAGCGAGTCAGCGTGGGCCCGCTCGACCACCACTCGTGACAGCCCCGTCCATACCACCATCAACGACGGCCTGTCCAGCCTCTTCAACATCATCGACCACACCCCCGTGGCCTACGAGTCCATGCAGAAGTTCAACAAGTCCCCCAGTCGCTCTCGCCCCACCCCTCCCTCCACCACCGAGCCCAGCCCTGCTCACGGGGCTCTCGCCACAGACCCCAGGACCGAGTGCTTGCGGATTGCTCGCGGGCGCTCACCCAGCCCCGTGCAGCTGATAGTGGAGACGCAGGGGGACAGAAACCCAGAGGTGGTGAGCATACGGCAGGACCTGTCGGCCCCGCCGGGCTACACGCTGGCTGAAAACACAGCCCGCATCCTTAATAAGAAGCTGCAGGAGCAGAGCtttagagaggagaggaggctgCAGGCTGGAGGACAGAGCAGCCACAGCAGAGACAGCAGCCGGCAGGCCGACTCAGACAGAGGACAGTCTGGATGTATGGAGATCGAAAGCACTGACTGATGCAATGGACCTGCCTCGTTCTCCGGTGGCTCCACCCCTGGACTCCTGCTTCCTGAGACCGGCCCGCCCGGCCAACCGACGACCCCCCTCGCGCTGGGCCGCccgctccccctcctcctcccccaagTGGAGCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155419 lncRNA upstream 7370 16430161 ~ 16431655 (+) True G115223
TU155397 lncRNA upstream 60506 16289237 ~ 16378519 (+) True G115208
TU155391 lncRNA upstream 170196 16262657 ~ 16268829 (+) True G115207
TU155504 lncRNA downstream 80226 16606703 ~ 16608542 (+) True G115295
TU155499 lncRNA downstream 84167 16610644 ~ 16612206 (+) False LOC120568363
TU155501 lncRNA downstream 84167 16610644 ~ 16612161 (+) False LOC120568363
TU155573 lncRNA downstream 233958 16760435 ~ 16821676 (+) True G115350
TU155669 lncRNA downstream 631151 17157628 ~ 17158200 (+) True G115404
XM_039815931.1 mRNA upstream 9629 16345208 ~ 16429396 (+) True LOC120568416
XM_039815932.1 mRNA upstream 11152 16344648 ~ 16427873 (+) False LOC120568416
XM_039815709.1 mRNA upstream 125224 16252963 ~ 16313801 (+) False LOC120568300
XM_039815710.1 mRNA upstream 125224 16271864 ~ 16313801 (+) True LOC120568300
XM_039815491.1 mRNA upstream 210474 16226320 ~ 16228551 (+) False LOC120568164
XM_039815833.1 mRNA downstream 27268 16553745 ~ 16560428 (+) True ndufv2
XM_039815827.1 mRNA downstream 35719 16562196 ~ 16609463 (+) True ankrd12
XM_039815828.1 mRNA downstream 35719 16562196 ~ 16609463 (+) False ankrd12
XM_039815829.1 mRNA downstream 35719 16562196 ~ 16609463 (+) False ankrd12
XM_039815830.1 mRNA downstream 35719 16562196 ~ 16609463 (+) False ankrd12
TU155276 other upstream 210503 16226307 ~ 16228522 (+) False LOC120568164
TU155130 other upstream 638532 15764698 ~ 15800493 (+) False st6galnac3
XR_005640847.1 other upstream 715228 15723729 ~ 15723797 (+) True LOC120569145
XR_005640846.1 other upstream 715822 15723135 ~ 15723203 (+) True LOC120569144
XR_005640848.1 other upstream 716452 15722507 ~ 15722573 (+) True LOC120569146
TU155758 other downstream 881014 17407491 ~ 17440463 (+) False LOC120568596
TU155940 other downstream 1500803 18027280 ~ 18029895 (+) True LOC120567767
TU156065 other downstream 1778672 18305149 ~ 18354344 (+) True G115729
TU156233 other downstream 2146085 18672562 ~ 18674062 (+) False LOC120568691
TU156400 other downstream 2490581 19017058 ~ 19018726 (+) False LOC120568770

Expression Profile