RNA id: XM_039815945.1


Basic Information

Item Value
RNA id XM_039815945.1
length 1744
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC120568423
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15070483 ~ 15088029 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAACTTTTCGGGGAATTCTCTTTCACAACAATTAACTGGCTCTGATGTGAACTGGGCACCTCGCTCTGCTCTAGTATTTTAAGTCTTAACAAAATGTGTGTGAGAtatcttggatttgttcttttGGTTTGGTTCCCAGGAGGACTGCATTCACAAAGTGCAGGTCAGCCGTGTCGTGCTCTGACTCTTGATGGTGGTTATTTGGTCCCGGAAGAAAACACGTATTCTCATGAAGCCAACCTCACGTATGGCTGTGATAATGGACTTAAACCAGCAGTGGAGGGTTGGTGGGCCACAATCACATGTCAAAATGGTGAATGGTCGCCTAAACCACAGTGTATAGaTGAAAAAGCTTGCATTCCACCAGATATACCCAAtgcacaatacaaaaaaaacctcAGAGGTTGGTATAAGAACAATCAACGACTCAGGGTAAGATGTGACGAAGGATATGAACACAAAGGCAATGATGCTACAGCCATATGTACAAATGGAACATGGTCCTCTGTGCCGGTCTGTGAGAAAAGTATCAAAGCATGTGGTGAGCCCCCTAAAATCCCCCATGCAGTCATCATCCATCAGGTATACCATGAGTTGTTTGCTGCAGATTCAGTAGTGCAGTATGAATGTGAAGATGGATATACTGTAGAGGGAGGAGGAACCAAGGAATACATCACTTGCATGTCTGGAAGCTGGACTGAAGGCCCAATGTGCAACAGAGGAACCAGTTTAGGTACTGGAGATGATGGAGGTACATCTGGCAGCAGGAcaccacctgcaggtggagGATGGTCTGCCACCTCTGGCTCGaatgagagagacaggagacCTCCATTCACAGCAGACAGAGGAACCAGTTTAGGTACTGGAGATGATGGAGGTACATCTGGCAGCAGGAcaccacctgcaggtggagGATGGTCTGCCACCTCTGGCTCGaatgagagagacaggagacCTCCATTCACAGCAGGCAGAGGAACCAGACCAGAGAAGGGACTTTGTGGAGACAGAGGAACCAGTTTAGGTACTGGAGATGATGGAGGTACATCTGGCAGCAGGAcaccacctgcagGATGGTCTGCCACCTCTGGCTCGaatgagagagacaggagacCTTCATTCACAGCAGTCATCCACTGTGGAGCATACCCAATCGTACCAAACGGTGATGTTGTGAAAGAAGATCCAATGTTTTTGAAATACCAATGCAATGCCTTTTATAAACAAGTGGGTTCAGACACCGTGAGGTGTCACAGTGAAGGCAACTGGTCACAACTACCCATCTGCCAAGAGGCATTCTGTGTCATAGATCTTGCTCAATATCCTGTGGGCGGTGTTAAACTATCTGGACGTGAATATGTAACTGAAGGAGAAACAAAGTACATTCAGTGTATCTGGAATTATTACAGCAGTCGTGTTCAGTGCATcaatagaacatttttttataCCCAGTGTTGTCATCACTATGACCATTACCGGGGAGCTTGCTCGTAAAGCACAGCCGACGATTCGCTGCTCGACTGACAACTAAAGCCAAGTTGGACACTTCTAAAATTCCTCCACCAGAAAACGATACCCAAAACATTATTGCTTTTTCATTTGGATCAagaatatatacacacaatgtTGGAGCTTATTTTTATGACAGGAACTCTTGATGTATTAATAACATGATCTGTACTTTTAAATAAAGTTGATATGTCAACAGCAGACTGAATAAAATGTTCACTATAGAAATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154771 lncRNA upstream 2032 15068149 ~ 15068451 (+) True G114747
TU154770 lncRNA upstream 4044 15066123 ~ 15066439 (+) True G114746
TU154769 lncRNA upstream 5090 15065090 ~ 15065393 (+) True G114745
TU154767 lncRNA upstream 45381 15022277 ~ 15025102 (+) False ro60
TU154747 lncRNA upstream 77400 14990988 ~ 14993083 (+) False rgs18
TU154853 lncRNA downstream 73246 15161275 ~ 15251219 (+) True G114793
TU154948 lncRNA downstream 278928 15366957 ~ 15368773 (+) False LOC120568540
TU154979 lncRNA downstream 328703 15416732 ~ 15418048 (+) True G114889
TU154994 lncRNA downstream 344642 15432671 ~ 15432944 (+) True G114904
TU154995 lncRNA downstream 348075 15436104 ~ 15437753 (+) True G114905
XM_039815943.1 mRNA upstream 8516 15027835 ~ 15061967 (+) True cdc73
XM_039816193.1 mRNA upstream 44275 15013743 ~ 15026208 (+) True ro60
XM_039814524.1 mRNA upstream 67451 15001264 ~ 15003032 (+) True LOC120567612
XM_039816499.1 mRNA upstream 74321 14994823 ~ 14996162 (+) True LOC120568793
XM_039816646.1 mRNA upstream 78093 14985777 ~ 14992390 (+) True rgs18
XM_039815949.1 mRNA downstream 1390 15089419 ~ 15093399 (+) True LOC120568425
XM_039815950.1 mRNA downstream 2895 15090924 ~ 15093399 (+) False LOC120568425
XM_039815952.1 mRNA downstream 9548 15097577 ~ 15111430 (+) True LOC120568427
XM_039815951.1 mRNA downstream 9624 15097653 ~ 15111430 (+) False LOC120568427
XM_039815291.1 mRNA downstream 40793 15128822 ~ 15138022 (+) True LOC120568088
TU154338 other upstream 774490 14289537 ~ 14295993 (+) False LOC120568245
TU154336 other upstream 775215 14287150 ~ 14295268 (+) False LOC120568245
TU154339 other upstream 775215 14292760 ~ 14295268 (+) False LOC120568245
TU154337 other upstream 779523 14288355 ~ 14290960 (+) False LOC120568245
unassigned_transcript_558 other upstream 1852273 13218139 ~ 13218210 (+) True trnae-cuc_17
TU154847 other downstream 63767 15151796 ~ 15157199 (+) True G114789
TU155017 other downstream 384714 15472743 ~ 15478344 (+) False asip2b
TU155036 other downstream 432770 15520799 ~ 15528769 (+) False zgc:153115
XR_005640849.1 other downstream 634110 15722139 ~ 15722248 (+) True LOC120569147
XR_005640848.1 other downstream 634478 15722507 ~ 15722573 (+) True LOC120569146

Expression Profile