RNA id: XM_039815956.1


Basic Information

Item Value
RNA id XM_039815956.1
length 3323
RNA type mRNA
GC content 0.50
exon number 12
gene id zbtb41
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15120583 ~ 15127965 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCGTGTGTAATGCACGACAAACACGTCCTCATAGTTTGATTGGTGTTTGACTTTTAATGCGTTACATAGAAAATGCATTAACAAAGTAACGATACGTGTGTCAGCTGGAGTGTACAGTGCTTTGTAAACGCGGCCCGTATCTCTAAGGAGTGATTCATGGTCGCCCACCAGGCTCACTAATGAAGAAAAAGCCTTGTAATCCGCTGCGTCCCAAACGCAGCAGGCAGGCCAGTGCCAGCAATGGATGTGTTACAGAGCCGAGCACTCTGCTGAGCTCCAATGCCCAAGCAAACTCTGAAACTGTCCCAGAATCAACCTCCCCAATCAGGCACATGGCTATGTCTCAGCACTGTCACAACCTCCTCAAATTCTTGAATGAGGATCGGACTCGACAGAGGTTctgtgatgtgtctgtgtctgtgggcGGGAAACTCTACCGTGCCCACAAGGTGGTGTTGGCCCATGGCAGCAGCTACTTCCACGCTGAGCTGTCCAAGAACCCTGCTACAGCGCATGTGACTCTGGACCATGTGGAGGACTCTGTTTTCCAGCACCTGCTTGGCTTTTTGTACACCTCTGAGTGCATTGTCCCAGAGACGGAGCTTCCAGCTCTAACTGAAGCGGCCCGATTCCTGGACATGATGGATATACTTAAGTTGCTGTCTGAAGAAGGACACCACAACAACCCAGTACGTGTGATCCAGTCACAGGATGAGATAAGAGAGTCTCCTGAGGTGGAAATGACCTCCAGTGACTCGCCAGCAGGTGACGAAGACATCCAGAGCCTAGGTGATGTTCGGTGCACCATGTGCAGTCGCCAGTTTAGCAGTGCAAACTCCCTGCAGAACCACTTGGCTGAGAGTCACACTAATGCACAGCAGGAAATCTCAACTGAGAAAGGGAAGACCGAAGCTGAGAGGACTGCTACCACGCGGAGATCAGCTCGCAGGAGGAGAACACCCACCAAGTATCAGAGAGACAATGTAAGAGACAACACTCCTGAGGAGAAACAAAGGACTGTATCACCAAGAGAGCAAGATGAAGAAATAGAAGAAGCGGAAAAGGTGGTTGTGGAAAACCAAGCTCCCAAACTGGCCGCGAACAAGACATCTAAACCAGCTCAGGGGGAAGACGTAgtggacgaggaggaggaggaggatgaaggaGACATGAATGAGGATGTGGTTGCCCAGAGGAAAGTTGTTGAGGTTTGCGCAGCAGACGAGAGCGCAGGTCAGCAGGGTTCTGATGTAGAAAGGGCAGAGCACCAGGCTGATGGACAGGTGGAAGTGCATGTGCCAGCAGCAGGAAGCTCTACCCAGGGTCCAGTGTACCCTGAGGGGCTGGCTCCAGTCATCATCCAAACCTCCAGCAAGAAGATTCTCAAGTGCCCCAAATGTGACAAGACCTTTGACCGTGCAGGGAAGTATGAGAGTCACACCAGAGtgcacacaggagagaaaccattcCAGTGTGACATCTGCCTTCAGCGCTACTCCACCAAGTCCAACCTGACTGTACACAAGAAGAAGCACACCAGCGATGCACCCGTCCAGAAGAAGGAGCACAAATGCCCCTTCTGTAACAAACTCCATGCCAGCAAGAAAACCCTGGCCAAGCATGTCAGAAGGTTTCATCCAGACCACATCCAAGAGTTTCTTaccaagaggaagaggaagagtgaAGGCTGGAAATGTGCTATTTGTCTGAAGACCTTCACCCGCAGGCCTCATCTGCAGGAGCACATGATCCTGCACACCCAGGACCGGCCTTTTAAATGCTCCTTCTGTGATGAATTCTTCAAGTCCAGGTTTGCCAGGCTGAAACACCAAGAAAAGTACCACTTAGGTCCCTTTCCCTGTGAGATTTGTGGCCGACAGTTTAATGACACAGGCAACCGAAAGAGACACATTGAGTGCACACATGGCGGCAAAAGAAAGTGGACCTGCTTTGTTTGTGGGAAATCTGTAAGGGAAAGGACAACCTTGAGAGAGCATTTGAGGATCCACAGTGGGGAGAAGCCTCACCTCTGTAGTATCTGTGGCCAAAGTTTCCGTCATGGCAGCTCCTACAGGTTACACCTGAGAGTCCACCATGACGACAAGCGCTATGAGTGTGATGAATGTGGGAAAACCTTTATACGCCACGATCACCTGACCAAACATCAGAAAATACACTCTGGTGAGAAAGCACACCAATGTGAAGAATGTGGCAAGTGCTTCAGGCGCCATGATCATCTGACGGTCCACTACAAAAGCATTCATTTGGGAGAGAAAGTTTGGCAGAAGTATAAAACCGCTGTGCATCAGTGTGAGGTCTGCAAGAAAGAATTTAAAGGAAAGTCCAGTCTAGAAATGCACTTCAGGACCCACTCAGGTGAGAAACCCCACAGATGTCCCGAGTGCAACCAGACATTTCGGATCAAGAAGACCTTGACAAAGCACATGGTGATTCACTCAGACGCTCGTCCTTTTAACTGCCCCCACTGCAGCGCcacctttaaaagaaaagacaagCTCAAGTACCATGTTGACCACGTGCACAGCACCCGGTGTACTGAGCAGCCCCTCGGCACACTCGGCGAAATCAAAATAGTCTCCATTCCTTTTGAGGAGCCCTCTAAGGTATACCGCGCGGAACCTAAGTCAGCCCTCCAGAGCCCCCCCCGTCCTACGAACGTCTGCGTGCCTGTTACTTTAGTTCCTGTCCAAATGGCAGGAGGAGCGCAGGGAGACCTGAATGCTCACAGGGCCGCGTCTCTCTCCTCCCAGACTCACAGCGTTGTGAGCATGCAGGCTGAAGGACAGCAGCAGAACTCTCGCTACCAGGCTGCGACAGACCTGGCATTCTTAGAAAAGTACACCCTAACCCCCCAGCCCGCCAACATTGTCCACCCTGTCAGGGCCGATCAGATGCTGGACCCCCGAGAGCAGTCCTACCTGGGCACGCTGCTGGGACTGGATTCAGCTTCCTCTGTGCAGAACATCTCTAACTCTGATCACACACACTGACGCTCCTCAGCCAAACAGTGGGCCTTGAACAGTCTTCTAATAAGAACAGAAGCTAAAATATTCACCACTAAAATGTATTCACACTTCAATATAGAGGGCAATTATTTTCCTCCATGTGACATTATTACATTTAAGACAAAAACTATAATGGTGCAGCATGGGATAACTTCTTTGATGTTCAGCCTGATCTCAGGTAATTCATACCTCATTGTCAACAAAATAATTATATTGTGTGACAcatacaaaaagaagaaaaatgtgtggatctaagcagttttttttttttgttttaactgaaataaaatatctat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154790 lncRNA downstream 38603 15076141 ~ 15081980 (-) True G114752
TU154756 lncRNA downstream 117538 15001144 ~ 15003045 (-) True G114733
XR_005640751.1 lncRNA downstream 162180 14954578 ~ 14958403 (-) True LOC120568695
XR_005640836.1 lncRNA downstream 338111 14780276 ~ 14782472 (-) True LOC120569096
TU154667 lncRNA downstream 369055 14751245 ~ 14751528 (-) True G114661
TU154900 lncRNA upstream 136555 15264520 ~ 15266224 (-) True G114836
XR_005640790.1 lncRNA upstream 259513 15387478 ~ 15393259 (-) True LOC120568803
TU154969 lncRNA upstream 279412 15407377 ~ 15407627 (-) True G114883
TU155136 lncRNA upstream 593054 15721019 ~ 15727229 (-) True G115017
TU155169 lncRNA upstream 607089 15735054 ~ 15735281 (-) True G115041
XM_039815948.1 mRNA downstream 75930 15039845 ~ 15044653 (-) True LOC120568424
XM_039816377.1 mRNA downstream 203152 14895172 ~ 14917431 (-) True LOC120568704
XM_039816378.1 mRNA downstream 203988 14895172 ~ 14916595 (-) False LOC120568704
XM_039814711.1 mRNA downstream 256893 14862531 ~ 14863690 (-) True rgs5b
XM_039814532.1 mRNA downstream 270773 14835084 ~ 14849810 (-) True LOC120567619
XM_039815295.1 mRNA upstream 9862 15137827 ~ 15146730 (-) False LOC120568089
XM_039815297.1 mRNA upstream 9862 15137827 ~ 15146730 (-) False LOC120568089
XM_039815293.1 mRNA upstream 9862 15137827 ~ 15146730 (-) True LOC120568089
XM_039815296.1 mRNA upstream 9862 15137827 ~ 15146257 (-) False LOC120568089
XM_039815303.1 mRNA upstream 24161 15152126 ~ 15159774 (-) False LOC120568091
TU154687 other downstream 323539 14795918 ~ 14797044 (-) True G114680
TU154602 other downstream 504811 14613613 ~ 14615772 (-) False LOC120568687
TU153973 other downstream 2032020 13084561 ~ 13088563 (-) True G114152
XR_005640810.1 other downstream 2351958 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 2517674 12601180 ~ 12602909 (-) False nedd8l
XR_005640598.1 other upstream 162221 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 162221 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640842.1 other upstream 283197 15411162 ~ 15411347 (-) True LOC120569139
XR_005640843.1 other upstream 283698 15411663 ~ 15411840 (-) True LOC120569141
XR_005640844.1 other upstream 284428 15412393 ~ 15412467 (-) True LOC120569142

Expression Profile