RNA id: XM_039815958.1


Basic Information

Item Value
RNA id XM_039815958.1
length 2844
RNA type mRNA
GC content 0.54
exon number 21
gene id LOC120568430
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32075076 ~ 32115947 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTACCTGGGCGTGGTGCTGGCAGCCGTGGTCATCATCACCGGTTGTTTCTCCTACTTCCAAGAGGCCAAGAGCTCCCGAATCATGGACTCCTTCAAGAAAATGGTGCCACAGAAAGCGTTGGTGATCCGGGAGGGGGAGAAGATGCATATCAATGCTGAGCTTGTGGTGCAGGGAGATCTGGTGGAGATCAAAGGGGGAGACCGCATCCCAGCTGACCTTCGAGTGGTCTCCTCCAGCGGGTGCAAgGTGGACAACTCGTCTCTGACGGGAGAATCGGAGCCTCAGACACGCTCCCCGGAGTTCACGCACGACAATCCTCTGGAGACCCGCAACATCTGTTTCTTTTCCACCAACTGTGTCGAGGGAACGGCCCATGGCATCGTGATTGGCACCGGTGACCGAACAGTGATGGGTCGCATCGCCACGCTGGCGTCAGAGCTGGAAGTCCGCCGCACGCCCATCAACATAGAGATCGAACATTTCATCCACCTCATCACGGGCGTGGCCGTCTTCCTGGGCGTGTCCTTCTTCATCCTGTCAATCATCCTGGGCTACACCTGGCTGGAGGCCGTCATCTTCCTCATTGGCATCATCGTGGCCAACGTGCCCGAGGGACTGCTGGCAACTGTCACTGTGTGTCTGACTCTCACTGCCAAGCGAATGGCCAAGAAGAACTGTCTGGTGAAGAACCTGGAGGCCGTAGAAACTCTGGGCTCCACCTCCACCATCTGCTCCGACAAGACAGGCACGCTGACCCAGAACCGCATGACCGTGGCCCACATGTGGTTCGACAACCAGATCCACGAAGCGGACACCACAGAGGACCAGACTgGTTTTGGTTTTGACAAGACCTCTGCTACTTGGACTTCTCTGTCTCGTGTGGCTGGCCTGTGCAACAGAGCTGATTTCAAAGGCGGACAGGAGGAATTTCCCATCCTGATGAGGGAGACAGCGGGGGATGCATCAGAATCAGCTCTGTTGAAATGCATCGAGCTGTGCTGTGGGAGTGTTCGGGAAATGAGAGCTAGAAATCTCAAAGTGGCAGAGATCCCCTTCAACTCCACCAACAAATACCAGCTCTCTGTCCATGAAGTGGAGGACAATCCCTCTGGTCATATTCTGGTCATGAAGGGAGCGCCGGAGAGAATCTTGGAGAGGTGCAGTAGGATTATGATCCACGGCCAGGAGCTGCCACTTGATGAAACCTGGAGAGAGGCTTTCCAGAATGCCTACATGGAGCTGGGAGGACTGGGAGAGAGAGTGCTAGGCTTCTGCCACACAAATCTGTCTTCCACCCAGTTCCCTCGAGGATTCAACTTCGACAGCGAAGAAACAAACTTCCCCATCGAGCAGCTCTGCTTCCTGGGTCTCATCTCCATGATTGATCCGCCGCGTGCCGCTGTGCCTGACGCAGTGGGTAAATGCCGCTCTGCCGGTATCAAGGTGATCATGGTGACAGGGGACCACCCAATCACGGCCAAAGCCATTGCTAAAGGTGTGGGCATCATCTCCGAGGGCAACGAGACAGTTGATGACATCGCCGAGAGACTCAATATCCCTTTGAGCCAAGTCAaccccagGGATGCCAAGGCTTGCGTGGTGCACGGCGCAGACCTAAAGGACATGAGCCGCGAGTACCTGGACGACCTGCTGAGGAACCACACTGAGATAGTGTTTGCTCGCACCTCTCCACAGCAGAAGCTCATCATAGTGGAGGGCTGCCAGAGACAGGGGGCGATCGTGGCCGTGACAGGCGACGGCGTGAATGACTCCCCGGCCTTAAAGAAAGCCGACATCGGCGTTGCCATGGGGATCGCCGGCTCCGATGTGTCCAAGCAGGCAGCTGACATGATCCTGCTGGACGACAACTTTGCCTCCATCGTCACCGGAGTGGAGGAGGGTCGTCTCATCTTTGACAACCTGAAGAAGTCCATTGCATACACGCTGACCAGTAACATCCCAGAGATCTCgcccttcctcctcttcatctgtGCTAGTGTTCCTCTTCCGCTGGGAACTGTCACCATCCTCTGCATCGACCTGGGCACTGACATGGTTCCGGCCATCTCATTGGCTTATGAGACAGCTGAGAGTGACATCATGAAACGCCAACCAAGGAATCCCAAAACAGACAAGCTGGTCAATGAACGCCTCATCAGCATGGCATACGGGCAGATAGGGATGATCCAGGCTCTTGCTGGTTTTTTCACCTATTTTGTGATTTTGGCTGAGAACGGCTTCCTCCCGAAGAACCTTGTGGGCATCCGCATCAGGTGGGACGACCGCGAAGTAAATGATGTGGAGGACAGCTATGGGCAGGAGTGGACCTATGAGCAGAGGAAGATCATTGAATTCACCTGCCACACCTCCTTCTTCATCAGCATCGTTGTCGTGCAGTGGGCTGATGTTATCATCTGCAAGACCAGGAGGAACTCCCTCTTTCAGCAGGGCATGAAGAACAGGATCCTGATCTTTGGTCTGTTTGTTGAGACTGCTCTGGCTGCCTTCCTCTCCTACTGCCCTGGAATGGACATTGCCCTGCGCATGTACCCCCTAAAgCCCCTGTGGTGGTTCTGTGCCTTCCCATACAGTCTTCTCATCTTCATTTATGATGAGGTCCGTAAATTAATTCTGAGGAGGAGCCCCGGAGGTTGGGTGGAGAAGGAGACATATTATTaatattcagaaaataAAACATTTCCAGCAAAACAATGGTAATGTATACCTGTGTGCCTTATATAAACTGTTCCCAAAGTGACATATCATGGCCTGCAGGCTCTAAAGGAATACCAAAGTCGTTCATCGTGTGTAATGtaccaaataaaaatgtattccaaAATA

Function

GO:

id name namespace
GO:0010084 specification of animal organ axis polarity biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0051480 regulation of cytosolic calcium ion concentration biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0001947 heart looping biological_process
GO:0042044 fluid transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01531 mgtA, mgtB; P-type Mg2+ transporter

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640633.1 lncRNA upstream 15703 32056055 ~ 32059373 (+) True LOC120567918
TU160760 lncRNA upstream 159475 31849440 ~ 31915601 (+) True G119332
TU160757 lncRNA upstream 160372 31912678 ~ 31914704 (+) True pip4p1a
TU160753 lncRNA upstream 232105 31838382 ~ 31842971 (+) True G119328
TU160729 lncRNA upstream 343786 31730145 ~ 31731290 (+) True G119306
TU160858 lncRNA downstream 8617 32124564 ~ 32124915 (+) True G119398
TU160878 lncRNA downstream 225178 32341125 ~ 32341363 (+) True G119409
TU160886 lncRNA downstream 232174 32348121 ~ 32349713 (+) True G119415
TU160887 lncRNA downstream 248619 32364566 ~ 32364768 (+) True G119416
TU160888 lncRNA downstream 256616 32372563 ~ 32403711 (+) True G119417
XM_039814663.1 mRNA upstream 3764 32067563 ~ 32071312 (+) True LOC120567694
XM_039816191.1 mRNA upstream 23641 32031653 ~ 32051435 (+) False mpz
XM_039816189.1 mRNA upstream 23643 32031652 ~ 32051433 (+) True mpz
XM_039816190.1 mRNA upstream 27433 32031652 ~ 32047643 (+) False mpz
XM_039816638.1 mRNA upstream 58724 31942203 ~ 32016352 (+) True lig1
XM_039816809.1 mRNA downstream 3006 32118953 ~ 32124498 (+) True sdhc
XM_039815394.1 mRNA downstream 12511 32128458 ~ 32216046 (+) False cadm3
XM_039815393.1 mRNA downstream 12515 32128462 ~ 32222813 (+) False cadm3
XM_039815392.1 mRNA downstream 12516 32128463 ~ 32222813 (+) False cadm3
XM_039815395.1 mRNA downstream 12520 32128467 ~ 32222813 (+) False cadm3
TU160818 other upstream 3776 32067612 ~ 32071300 (+) False LOC120567694
TU160769 other upstream 162469 31888928 ~ 31912607 (+) False pip4p1a
TU160764 other upstream 206283 31865755 ~ 31868793 (+) True dnaaf6
TU160672 other upstream 614168 31459864 ~ 31460908 (+) True G119257
TU160516 other upstream 875062 31198960 ~ 31200014 (+) False G119123
unassigned_transcript_563 other downstream 10410 32126357 ~ 32126430 (+) True trnar-ucu_14
TU160865 other downstream 73033 32188980 ~ 32226483 (+) True cadm3
TU160866 other downstream 73125 32189072 ~ 32226483 (+) False cadm3
XR_005640735.1 other downstream 336758 32452705 ~ 32455106 (+) False LOC120568569
XR_005640734.1 other downstream 336758 32452705 ~ 32455106 (+) False LOC120568569

Expression Profile