RNA id: XM_039815961.1


Basic Information

Item Value
RNA id XM_039815961.1
length 2323
RNA type mRNA
GC content 0.44
exon number 11
gene id cdc20
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24138155 ~ 24142097 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGTCAACGTCACGAAATTCAAAATttagaaagagaagagagaacgGTCGGTGTTGCTCCGGTGTATTCCACGTTTTCTTGAAGAAGTGAGCTCGTTCTGTTAATTTTGAGGTTTCAGAAGGGCAATATTTGACGGTCGTGTGAAAACCTGGATATAATGGCGCAGTTTGGGTTTGAGAACGACATCCATAGCATCTTGAAGCTGGATATGCCCATCACAAACGCTCCTATGGCAAGGTGGCAGAGGAAGGCTAGCTCATCAAACTCATCCGCCTTGAACGGATTGTCTCCTGGCAAATCTGCCAATGTGTCGCTCAGTTCATCAAAAACGCCAAGCAAAACACCAGgcaaaaataaaaagcagacaCCATCTAAGATGGGGGGCGACCGCTTCATTCCCACCAGAAACAGCAAACAAATggatgtggcaagttttctgcTCTCAAAAGAGAATGAGCCTGTGGACGCAAACAATACAGCTGGAACATCAGAAAGCCAGAAAGCATGGTCTATGTCCCTAAATGGATACAACATTGATGATGCAAAGATCCTTCACCTTGGAGGGAAACCACTGAATGCTCCAGAAGGCTATCAAAACAACTTGAAAGTCCTCTACAGTCAGGGTGCAACCCCTGCCTCTGTCAAAAAGACTAGATACATATCTTCAACTCCTGACAAAATCCTGGATGCTCCTGATCTTCGAAATGATTTCTATTTGAATCTGATTGACTGGAGCAGTCGGAATGTTCTCGCTGTGGCACTTCATAACAGTGTTTACCTGTTGGATGCCTCTCAAGGAGACATCACTCTCCTCATGAGGTTGGAGAGTGAGGACATCTACATCTGCTCACTATCCTGGACCAAAGAGGGAACCTACCTAGCTATCGGCACCAGTGACTGCAAAATTCAGtTGTGGGACGTTTACAACCAGAAGCGTCTACGCAGCTTGGCCAGCCATACGTCTAGAGTTGCTTCACTGAGCTGGAATGACCATGTTCTCACCAgTGGCTCGAGATCAGGACACATCCACCATCATGATGTGAGGGTGGCAGACCACCACATCTTTACGCTTACTGGTCACTCACAGGAGGTGTGTGGGCTTAAGTGGTCACCTGATGGACGATACCTGGCCAGTGGAGGCAATGATAACTTGGTTTATGTATGGCCACGTATGCAGGAGGGCACCAACACTAACTCTGTCCAATGCTGGAGTGATCATCAAGGAGCTGTGAAGGCTTTGGCCTGGTGTCCATGGCAGCCAAATATCCTTGCATCTGGAGGTGGTACCAGTGACCGTCACATCCGCATCTGGAATGTTAACAGTGGCTCCTGCATCAGTTCACTTGACACTCAGTCTCAGatCTCGTCACTGTTGTTTTCACCCAACTACAAAGAACTTGTCTCTGCCCATGGATATGCCCACAACAATGTTGTTATCTGGAAGTACCCTGCTCTCACCAGGGTTGCAGAGCTCAAGGGCCACGAGGACAGAGTGCTCAGTTTGATTCTGAGTCCAGACTGCTCCACTATTGCGACTGTTGCTGGAGATGAGACTATCCGCATGTGGAAGAGCTTTGAAGTGGATCCTGTTAAGAAGGCCAAGGAGAGGCTGGTCAAGTCAACTAGCAGTGTAATTCATCAGTCAATCAGATAGTTTGCTCTgtgtgtagtttatttatttttataaaggtGTTTTGgtaatgtgcttttttttttaaatctacaaAGATGTACATGGTTTTAGATGTAACTGGCAGTTTACAGCTCCCATTGATGTAATGGGTGGTTGGTCTCAGTTGTTGAAACAGGTCTGTTAATGTGGTAAGTTGAGtggcttttttttgggggggggggggttaagcaATCCAATGTATTTAACTTTTATTAAAAACTAGGGATGCATTGTATACCACAGACTAGTTTATAAATAAATGCTTATAAATAAATGGTTTGATTAATGTGCTGTCGTGTATTGGTACTGCCATGGTGCAAACTGTAGGGCTTATATCAATTCACATGTAGTGATAACTATTATCTCCCCCAGTTCCTCATGGTAATGCCTGCCAAACCAACAGAATACAAATTCCATGTTTATCCTGCAAATATGTTATTTGTTAGCTTAGCTGTGGTTTAAGGTTTAAAAGGCAGTCTTCTCAAAAGTTTACTGGTGGTGTTAGTCTGAATCTGGTTGCTGTGTATTCTGTAGAAATTGCCTTATGACCTGTAGAGGTCACTCTCTGAAGTTtaacaaattgttgcagatgTATTGGAACTGAGGTTTAGAGTATAAGCTAATATAAAGTGTCACTTCTTAATTTCTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158223 lncRNA upstream 62851 24073887 ~ 24075315 (+) True G117389
TU158250 lncRNA upstream 93682 24043969 ~ 24044484 (+) True G117406
TU158244 lncRNA upstream 94625 24036655 ~ 24043541 (+) True G117405
TU158338 lncRNA downstream 8361 24150458 ~ 24150771 (+) True G117476
TU158349 lncRNA downstream 22757 24164854 ~ 24169555 (+) True G117487
TU158350 lncRNA downstream 27571 24169668 ~ 24169953 (+) True G117488
TU158403 lncRNA downstream 115457 24257554 ~ 24258831 (+) True G117523
XR_005640665.1 lncRNA downstream 195596 24337693 ~ 24339256 (+) True LOC120568139
XM_039816945.1 mRNA upstream 48224 24083696 ~ 24089942 (+) True LOC120569088
XM_039816224.1 mRNA upstream 81091 24054779 ~ 24057075 (+) True LOC120568612
XM_039816993.1 mRNA upstream 83462 24052352 ~ 24054704 (+) True LOC120569114
XM_039815143.1 mRNA upstream 133155 23968170 ~ 24005011 (+) False clcn2a
XM_039816710.1 mRNA downstream 10063 24152160 ~ 24160339 (+) True bokb
XM_039816226.1 mRNA downstream 28948 24171045 ~ 24197651 (+) True kif1ab
XM_039816810.1 mRNA downstream 58146 24200243 ~ 24209452 (+) False espnlb
XM_039816815.1 mRNA downstream 58146 24200243 ~ 24209452 (+) False espnlb
XM_039816814.1 mRNA downstream 58146 24200243 ~ 24209452 (+) False espnlb
XR_005640839.1 other upstream 83462 24049764 ~ 24054704 (+) False LOC120569114
XR_005640838.1 other upstream 83462 24049764 ~ 24054704 (+) False LOC120569114
TU158239 other upstream 114507 24022441 ~ 24023659 (+) True G117400
TU158169 other upstream 223668 23912664 ~ 23914498 (+) True hes6
TU158168 other upstream 229765 23905870 ~ 23908401 (+) True G117353
TU158470 other downstream 525796 24667893 ~ 24675753 (+) False LOC120569045
TU158471 other downstream 531827 24673924 ~ 24675753 (+) False LOC120569045
TU158583 other downstream 808471 24950568 ~ 24954247 (+) True G117664
TU158802 other downstream 1612996 25755093 ~ 25755890 (+) False LOC120568894
TU158814 other downstream 1633794 25775891 ~ 25793954 (+) False LOC120568895

Expression Profile